Ggra10229.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10229.t1
Unique NameGgra10229.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length318
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:160474..161427 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005702974.1
Preferred nameUQCRFS1
PFAMsRieske,UCR_TM,Ubiq-Cytc-red_N
Max annot lvl2759|Eukaryota
KEGG koko:K00411,ko:K00413
KEGG Pathwayko00190,ko01100,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0001932,GO:0001933,GO:0001934,GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005751,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009266,GO:0009408,GO:0009628,GO:0009719,GO:0009725,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010468,GO:0010562,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0015980,GO:0016020,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019220,GO:0019222,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031323,GO:0031324,GO:0031325,GO:0031399,GO:0031400,GO:0031401,GO:0031966,GO:0031967,GO:0031975,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0034641,GO:0042221,GO:0042325,GO:0042326,GO:0042327,GO:0042493,GO:0042773,GO:0042775,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045275,GO:0045277,GO:0045333,GO:0045936,GO:0045937,GO:0046034,GO:0046483,GO:0046677,GO:0046872,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051248,GO:0055086,GO:0055114,GO:0060255,GO:0061062,GO:0061063,GO:0065007,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0080090,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204,GO:2000026
Evalue4.64e-84
EggNOG OGsCOG0723@1|root,KOG1671@2759|Eukaryota
EC1.10.2.2
Descriptionoxidoreductase activity, acting on diphenols and related substances as donors
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10229Ggra10229Gracilaria gracilis GNS1m malegenetig00000016_pilon 160474..161427 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10229.t1.start1Ggra10229.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 160474..160476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10229.t1.CDS1Ggra10229.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 160474..161427 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10229.t1.exon1Ggra10229.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 160474..161427 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10229.t1.stop1Ggra10229.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 161425..161427 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10229.t1Ggra10229.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 160474..161427 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10229.t1 ID=Ggra10229.t1|Name=Ggra10229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=318bp
MCGFSGPPIVLRCITVAARPPILPSAATSRYQPPPPHRPERYPRRDASRN
SPSRRSRTDRVTRTSKMSMLSRFGAVARRLAANPSSLHRTAPSVGLRALA
TTPPTVANAGTLGAQTSSSELVAPRGPGALPVGYIDDYHNHPHRFMPGDP
TKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGA
IPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKP
EWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNL
DVPTYRFEEDDTKIILG*
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spliced messenger RNA

>Ggra10229.t1 ID=Ggra10229.t1|Name=Ggra10229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000016_pilon:160474..161427+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTGCGGTTTTTCAGGGCCGCCAATTGTGCTCCGCTGCATCACAGTAGC
GGCGCGCCCACCAATCCTCCCATCGGCTGCCACCAGCCGCTACCAACCAC
CCCCACCCCATCGCCCCGAGCGCTATCCGCGACGAGACGCAAGTCGTAAT
AGTCCGTCCCGTCGATCTCGAACGGATCGCGTCACCCGCACGTCAAAAAT
GTCTATGCTCTCCCGCTTCGGCGCGGTTGCGCGTCGGCTAGCCGCGAACC
CTTCTTCACTGCATCGAACGGCGCCATCAGTCGGACTTCGTGCGCTTGCT
ACCACCCCACCAACCGTTGCCAATGCGGGCACGCTTGGCGCGCAGACGTC
TTCCTCTGAGCTCGTCGCGCCGCGCGGACCGGGTGCTTTGCCCGTTGGTT
ATATTGATGACTATCATAATCACCCGCATCGCTTCATGCCCGGCGATCCG
ACGAAGCGTGCTTTCACGTATATGGTGCTTGGAACAACCAAGTTCATTGC
TGCTTCTGCTGTGCGCGTTCTAATTCTCAAGCTGATTTATACGATGTCGG
CTTCAGCTGATGTGCTGGCAAAAGGTTCGGTCGAAGTGGAGCTCGGCGCA
ATTCCACTCGGAGAATCGGCCACGATAAAGTGGAGAGGAAAGCCGGTCTT
CATTCGTCACAGAACAGAAAGTGAGATTTCTAAAGCAGCGGAAGATGATG
ATAAGGAATTGAGGCATCCTGAGGCAGACATAGACCGTGTACAGAAGCCA
GAGTGGCTTGTCGTGCTAGGCGTGTGTACTCATCTTGGATGTGTGCCAAT
TGCCAATGCTGGTGACTATCAAGGTTGGTTCTGTCCGTGCCATGGCTCTC
ATTATGATCTCTCGGGTCGTATCCGTAAAGGACCAGCACCCCTTAACTTA
GACGTGCCAACATACAGATTCGAGGAAGATGATACCAAGATCATTTTGGG
ATAG
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protein sequence of Ggra10229.t1

>Ggra10229.t1 ID=Ggra10229.t1|Name=Ggra10229.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=318bp
MCGFSGPPIVLRCITVAARPPILPSAATSRYQPPPPHRPERYPRRDASRN
SPSRRSRTDRVTRTSKMSMLSRFGAVARRLAANPSSLHRTAPSVGLRALA
TTPPTVANAGTLGAQTSSSELVAPRGPGALPVGYIDDYHNHPHRFMPGDP
TKRAFTYMVLGTTKFIAASAVRVLILKLIYTMSASADVLAKGSVEVELGA
IPLGESATIKWRGKPVFIRHRTESEISKAAEDDDKELRHPEADIDRVQKP
EWLVVLGVCTHLGCVPIANAGDYQGWFCPCHGSHYDLSGRIRKGPAPLNL
DVPTYRFEEDDTKIILG*
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mRNA from alignment at tig00000016_pilon:160474..161427+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10229.t1 ID=Ggra10229.t1|Name=Ggra10229.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=954bp|location=Sequence derived from alignment at tig00000016_pilon:160474..161427+ (Gracilaria gracilis GNS1m male)
ATGTGCGGTTTTTCAGGGCCGCCAATTGTGCTCCGCTGCATCACAGTAGC
GGCGCGCCCACCAATCCTCCCATCGGCTGCCACCAGCCGCTACCAACCAC
CCCCACCCCATCGCCCCGAGCGCTATCCGCGACGAGACGCAAGTCGTAAT
AGTCCGTCCCGTCGATCTCGAACGGATCGCGTCACCCGCACGTCAAAAAT
GTCTATGCTCTCCCGCTTCGGCGCGGTTGCGCGTCGGCTAGCCGCGAACC
CTTCTTCACTGCATCGAACGGCGCCATCAGTCGGACTTCGTGCGCTTGCT
ACCACCCCACCAACCGTTGCCAATGCGGGCACGCTTGGCGCGCAGACGTC
TTCCTCTGAGCTCGTCGCGCCGCGCGGACCGGGTGCTTTGCCCGTTGGTT
ATATTGATGACTATCATAATCACCCGCATCGCTTCATGCCCGGCGATCCG
ACGAAGCGTGCTTTCACGTATATGGTGCTTGGAACAACCAAGTTCATTGC
TGCTTCTGCTGTGCGCGTTCTAATTCTCAAGCTGATTTATACGATGTCGG
CTTCAGCTGATGTGCTGGCAAAAGGTTCGGTCGAAGTGGAGCTCGGCGCA
ATTCCACTCGGAGAATCGGCCACGATAAAGTGGAGAGGAAAGCCGGTCTT
CATTCGTCACAGAACAGAAAGTGAGATTTCTAAAGCAGCGGAAGATGATG
ATAAGGAATTGAGGCATCCTGAGGCAGACATAGACCGTGTACAGAAGCCA
GAGTGGCTTGTCGTGCTAGGCGTGTGTACTCATCTTGGATGTGTGCCAAT
TGCCAATGCTGGTGACTATCAAGGTTGGTTCTGTCCGTGCCATGGCTCTC
ATTATGATCTCTCGGGTCGTATCCGTAAAGGACCAGCACCCCTTAACTTA
GACGTGCCAACATACAGATTCGAGGAAGATGATACCAAGATCATTTTGGG
ATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:160474..161427+

>Ggra10229.t1 ID=Ggra10229.t1|Name=Ggra10229.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=954bp|location=Sequence derived from alignment at tig00000016_pilon:160474..161427+ (Gracilaria gracilis GNS1m male)
ATGTGCGGTTTTTCAGGGCCGCCAATTGTGCTCCGCTGCATCACAGTAGC
GGCGCGCCCACCAATCCTCCCATCGGCTGCCACCAGCCGCTACCAACCAC
CCCCACCCCATCGCCCCGAGCGCTATCCGCGACGAGACGCAAGTCGTAAT
AGTCCGTCCCGTCGATCTCGAACGGATCGCGTCACCCGCACGTCAAAAAT
GTCTATGCTCTCCCGCTTCGGCGCGGTTGCGCGTCGGCTAGCCGCGAACC
CTTCTTCACTGCATCGAACGGCGCCATCAGTCGGACTTCGTGCGCTTGCT
ACCACCCCACCAACCGTTGCCAATGCGGGCACGCTTGGCGCGCAGACGTC
TTCCTCTGAGCTCGTCGCGCCGCGCGGACCGGGTGCTTTGCCCGTTGGTT
ATATTGATGACTATCATAATCACCCGCATCGCTTCATGCCCGGCGATCCG
ACGAAGCGTGCTTTCACGTATATGGTGCTTGGAACAACCAAGTTCATTGC
TGCTTCTGCTGTGCGCGTTCTAATTCTCAAGCTGATTTATACGATGTCGG
CTTCAGCTGATGTGCTGGCAAAAGGTTCGGTCGAAGTGGAGCTCGGCGCA
ATTCCACTCGGAGAATCGGCCACGATAAAGTGGAGAGGAAAGCCGGTCTT
CATTCGTCACAGAACAGAAAGTGAGATTTCTAAAGCAGCGGAAGATGATG
ATAAGGAATTGAGGCATCCTGAGGCAGACATAGACCGTGTACAGAAGCCA
GAGTGGCTTGTCGTGCTAGGCGTGTGTACTCATCTTGGATGTGTGCCAAT
TGCCAATGCTGGTGACTATCAAGGTTGGTTCTGTCCGTGCCATGGCTCTC
ATTATGATCTCTCGGGTCGTATCCGTAAAGGACCAGCACCCCTTAACTTA
GACGTGCCAACATACAGATTCGAGGAAGATGATACCAAGATCATTTTGGG
ATAG
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