Ggra3323.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3323.t1
Unique NameGgra3323.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length188
Homology
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A2V3IFD3 (Malonate--CoA ligase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFD3_9FLOR)

HSP 1 Score: 167 bits (422), Expect = 4.980e-46
Identity = 91/174 (52.30%), Postives = 114/174 (65.52%), Query Frame = 0
Query:    1 MPLSPLYPTATIAPLLRFVQPHVETTAPF--DMLPLICPVVTVDHDGAALPDAGPDARLHDQTHYVELCDRFDRMMPHEALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSILGESQLQPPTVY 172
            +PLSPL+P A ++PLL  + P    T+      LP     V +      + +A P  R  D   Y  +CD    +MP  AL+FFTSGTTG PK VVWT   LMYQL+TLS AW WS  DR+L +L LHHIHG+VNVVL +++NGA+LE+HS FDAHSVW SILGE + QPPTV+
Sbjct:   76 VPLSPLFPAAALSPLLDVIDPAAIVTSQGLRHALPPFTNAVEL------VENAQPSEREID---YPAVCDELAPLMPSTALIFFTSGTTGHPKGVVWTQHMLMYQLQTLSKAWKWSSADRILNVLPLHHIHGMVNVVLSAIFNGATLEMHSAFDAHSVWRSILGEGEFQPPTVF 240          
BLAST of Ggra3323.t1 vs. uniprot
Match: R7QBS6 (Acid-thiol ligase n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QBS6_CHOCR)

HSP 1 Score: 115 bits (289), Expect = 7.210e-27
Identity = 73/165 (44.24%), Postives = 90/165 (54.55%), Query Frame = 0
Query:    1 MPLSPLYPTATIAPLLRFVQPHVETTAPFDMLPLICPVVTVDHDGAALPDA-GPDARLHDQTHYVELCD----RFDRMMPHEALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSI 160
            +PLSPLYP A +APLL    P     A     PL+ P V        L D  G +        Y   CD    R  +     A+L FTSGTTG  K VVW    L YQ RTL  AW WS+ DRV+ +L LHH+HGLVNVVL +LY GA +E+H+ F+A  VW ++
Sbjct:   87 VPLSPLYPAAALAPLLEDAAPA-AVVAEDATAPLLPPHVR--RRALLLEDVRGGEGSADRDGEYAATCDALAARCAQAQRDAAMLLFTSGTTGRAKGVVWRHAMLAYQTRTLCEAWRWSKDDRVVNVLPLHHVHGLVNVVLTALYAGAHVEMHARFEAARVWEAV 248          
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A7S2ZKG9 (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZKG9_9RHOD)

HSP 1 Score: 95.5 bits (236), Expect = 4.280e-20
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 0
Query:   77 EALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSILGESQLQPPTVY 172
            EA+L +TSGTTG PK VVWT + + YQ  T+S AW W++ DR+L  L L H+HG++N+   +++NGA L++   FD H  W  I   S   PPTV+
Sbjct:  161 EAMLIYTSGTTGKPKGVVWTHEMVDYQAETMSTAWRWNRSDRILLFLPLDHVHGIMNIAGCAVWNGAELDMMEVFDQHEAWSRIRSSS---PPTVF 253          
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A078B3T3 (Long-chain fatty acid--ligase n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A078B3T3_STYLE)

HSP 1 Score: 90.9 bits (224), Expect = 5.480e-18
Identity = 45/104 (43.27%), Postives = 64/104 (61.54%), Query Frame = 0
Query:   79 LLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSILGESQ--------LQPPTVYKN 174
            ++ +TSGTTG PK VV     +  Q+  LS AW WSQ D++L +L LHH+HG++NVV  +L+NGA LE+H  FD  +VW ++L            +  PT+Y N
Sbjct:  150 MILYTSGTTGKPKGVVHKFKSIKSQIEILSEAWGWSQDDKILNVLPLHHLHGILNVVNCALWNGAQLEMHDKFDTKAVWSALLRSRDDPLSLSLFMAVPTIYYN 253          
BLAST of Ggra3323.t1 vs. uniprot
Match: malonate--CoA ligase ACSF3, mitochondrial-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019396390 (malonate--CoA ligase ACSF3, mitochondrial-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019396390)

HSP 1 Score: 90.1 bits (222), Expect = 1.110e-17
Identity = 46/113 (40.71%), Postives = 67/113 (59.29%), Query Frame = 0
Query:   59 DQTHYVELCDRFD-RMMPHE-ALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSILGESQLQPP 169
            DQ     + D  D +M  H+ AL+ +TSGTTG PK VVWT D L  Q+  +   W W  +DR+L +L LHH+HG++N ++  L  GA++ + + F  H VW   LG+ +  PP
Sbjct:  162 DQYSEAGILDDIDVQMSSHDNALIIYTSGTTGRPKGVVWTHDHLQKQIEMMLAVWEWEYNDRILHVLPLHHVHGIINAMMCPLSIGATVVMENKFQPHKVWDHFLGKFEDFPP 274          
BLAST of Ggra3323.t1 vs. uniprot
Match: acyl-CoA synthetase n=1 Tax=Taibaiella koreensis TaxID=1268548 RepID=UPI000E599F02 (acyl-CoA synthetase n=1 Tax=Taibaiella koreensis TaxID=1268548 RepID=UPI000E599F02)

HSP 1 Score: 88.2 bits (217), Expect = 4.690e-17
Identity = 49/99 (49.49%), Postives = 64/99 (64.65%), Query Frame = 0
Query:   77 EALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFD-AHSVWWSILGESQL--QPPTVY 172
            +A++ +TSGTTG PK VV +  +L  QLR+LS AW W   DR+L +L +HH+HGLVN+   +LYNGA LE+  TFD AH       GE  L    PT+Y
Sbjct:  141 DAMMIYTSGTTGKPKGVVISHRQLDTQLRSLSEAWEWCTGDRILNVLPMHHVHGLVNITCCALYNGAVLEMQPTFDPAHVAARMTSGELTLFMAVPTIY 239          
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A352VLK4 (Long-chain fatty acid--CoA ligase n=2 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A352VLK4_9BACT)

HSP 1 Score: 87.8 bits (216), Expect = 6.570e-17
Identity = 47/106 (44.34%), Postives = 66/106 (62.26%), Query Frame = 0
Query:   71 DRMMPHEALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSIL-GESQLQP--PTVYK 173
            D      A++ +TSGTTG PK VV T   L  Q+ +LS AW WS+HD +L  L LHH+HG+ N++  +L+NGA+ E+ S F+A  VW  +  G+  L    PTVY+
Sbjct:  139 DLAADRSAMMLYTSGTTGRPKGVVVTHGNLQAQVSSLSDAWGWSEHDHILLHLPLHHVHGITNILTSALWNGATCEILSRFNAVDVWERLSRGDCTLYMAVPTVYR 244          
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A4Q6AFV2 (Long-chain fatty acid--CoA ligase n=1 Tax=Sphingobacteriales bacterium TaxID=2044944 RepID=A0A4Q6AFV2_9SPHI)

HSP 1 Score: 87.4 bits (215), Expect = 8.710e-17
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 0
Query:   77 EALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSILGESQLQ----PPTVY 172
            +A++ +TSGTTG PK VV T  +L  Q+R+L+ AW WS+ DR+L +L +HH+HG++N+   +LYNGA LE+ S FD   V  + +G  +L      PT+Y
Sbjct:  140 DAMMIYTSGTTGRPKGVVMTHAQLDAQMRSLTEAWGWSEQDRILNVLPMHHVHGVINITCCALYNGAVLEMQSGFDPAQVC-ARMGSRELTIFMAVPTIY 238          
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A136NH54 (Long-chain-fatty-acid--CoA ligase n=2 Tax=unclassified Bacteroidetes TaxID=37452 RepID=A0A136NH54_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 8.750e-17
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   69 RFDRMMPHE-ALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSV 156
            R  R+ P   AL+ +TSGTTG PK VV + ++L  Q+R+LS AW W   DR+L +L +HH+HG+VN+   +LYNGA++E+   FDA  V
Sbjct:  132 RIPRVKPESNALMIYTSGTTGKPKGVVISHEQLDTQIRSLSKAWEWKSSDRILNVLPMHHVHGVVNITCCALYNGATVEMQPQFDAACV 220          
BLAST of Ggra3323.t1 vs. uniprot
Match: A0A2U3L0D0 (AMP-dependent synthetase and ligase n=1 Tax=Syntrophobacter sp. SbD1 TaxID=2043167 RepID=A0A2U3L0D0_9DELT)

HSP 1 Score: 87.4 bits (215), Expect = 8.880e-17
Identity = 44/98 (44.90%), Postives = 62/98 (63.27%), Query Frame = 0
Query:   78 ALLFFTSGTTGVPKCVVWTVDRLMYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHSTFDAHSVWWSILGESQ---LQPPTVY 172
            A++ +TSGTTG PK VV T   +  Q+ +L  AW W+  DR+L++L LHH+HG+VNV+  +L+ GA  E+H  FDA  VW  I G      +  PT+Y
Sbjct:  145 AMILYTSGTTGKPKGVVTTHANIAAQITSLVEAWGWTGEDRILEILPLHHLHGIVNVMACALWVGAVCEIHPAFDARKVWDRIAGGGLTLFMAVPTIY 242          
The following BLAST results are available for this feature:
BLAST of Ggra3323.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFD34.980e-4652.30Malonate--CoA ligase n=1 Tax=Gracilariopsis chorda... [more]
R7QBS67.210e-2744.24Acid-thiol ligase n=1 Tax=Chondrus crispus TaxID=2... [more]
A0A7S2ZKG94.280e-2046.88Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A078B3T35.480e-1843.27Long-chain fatty acid--ligase n=1 Tax=Stylonychia ... [more]
malonate--CoA ligase ACSF3, mitochondrial-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI00193963901.110e-1740.71malonate--CoA ligase ACSF3, mitochondrial-like n=1... [more]
acyl-CoA synthetase n=1 Tax=Taibaiella koreensis TaxID=1268548 RepID=UPI000E599F024.690e-1749.49acyl-CoA synthetase n=1 Tax=Taibaiella koreensis T... [more]
A0A352VLK46.570e-1744.34Long-chain fatty acid--CoA ligase n=2 Tax=Gemmatim... [more]
A0A4Q6AFV28.710e-1745.00Long-chain fatty acid--CoA ligase n=1 Tax=Sphingob... [more]
A0A136NH548.750e-1748.31Long-chain-fatty-acid--CoA ligase n=2 Tax=unclassi... [more]
A0A2U3L0D08.880e-1744.90AMP-dependent synthetase and ligase n=1 Tax=Syntro... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000873AMP-dependent synthetase/ligasePFAMPF00501AMP-bindingcoord: 76..162
e-value: 1.4E-14
score: 53.6
IPR042099ANL, N-terminal domainGENE3D3.40.50.12780coord: 1..173
e-value: 1.4E-22
score: 81.9
NoneNo IPR availablePANTHERPTHR24096:SF267ACYL-COA SYNTHETASE FAMILY MEMBER 3, MITOCHONDRIALcoord: 2..174
NoneNo IPR availablePANTHERPTHR24096LONG-CHAIN-FATTY-ACID--COA LIGASEcoord: 2..174
NoneNo IPR availableSUPERFAMILY56801Acetyl-CoA synthetase-likecoord: 2..159
IPR020845AMP-binding, conserved sitePROSITEPS00455AMP_BINDINGcoord: 80..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000232_piloncontigtig00000232_pilon:28819..29382 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3323.t1Ggra3323.t1Gracilaria gracilis GNS1m malemRNAtig00000232_pilon 28819..29382 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3323.t1 ID=Ggra3323.t1|Name=Ggra3323.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MPLSPLYPTATIAPLLRFVQPHVETTAPFDMLPLICPVVTVDHDGAALPD
AGPDARLHDQTHYVELCDRFDRMMPHEALLFFTSGTTGVPKCVVWTVDRL
MYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHST
FDAHSVWWSILGESQLQPPTVYKNHKTRKSIRWQSRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000873AMP-dep_Synth/Lig
IPR042099ANL_N_sf
IPR020845AMP-binding_CS