Ggra3323.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra3323.t1
Unique Name	Ggra3323.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	188

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000232_pilon	contig	tig00000232_pilon:28819..29382 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	7070.TC030763-PA
Preferred name	ACSF3
PFAMs	AMP-binding,AMP-binding_C
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00004,RC00137
KEGG ko	ko:K18660
KEGG Reaction	R03383
KEGG Pathway	ko00280,map00280
GOs	GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006629,GO:0006631,GO:0006633,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0015645,GO:0016053,GO:0016054,GO:0016405,GO:0016874,GO:0016877,GO:0016878,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0031957,GO:0031974,GO:0032787,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035336,GO:0035337,GO:0035338,GO:0035383,GO:0035384,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043648,GO:0043649,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044283,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046394,GO:0046395,GO:0046483,GO:0046949,GO:0051186,GO:0051188,GO:0055086,GO:0070013,GO:0071616,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0090407,GO:0090409,GO:0090410,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576
Evalue	8.59e-18
EggNOG OGs	COG0318@1\|root,KOG1176@2759\|Eukaryota,38GCS@33154\|Opisthokonta,3BD3H@33208\|Metazoa,3CS1H@33213\|Bilateria,41TCV@6656\|Arthropoda,3SGJD@50557\|Insecta
Description	activity. It is involved in the biological process described with metabolic process
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra3323	Ggra3323	Gracilaria gracilis GNS1m male	gene	tig00000232_pilon 28819..29382 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3323.t1.start1	Ggra3323.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000232_pilon 28819..28821 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3323.t1.CDS1	Ggra3323.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000232_pilon 28819..29382 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3323.t1.exon1	Ggra3323.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000232_pilon 28819..29382 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3323.t1.stop1	Ggra3323.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000232_pilon 29380..29382 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra3323.t1	Ggra3323.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000232_pilon 28819..29382 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000232_pilon:28819..29382+
coding sequence from alignment at tig00000232_pilon:28819..29382+

mRNA sequence

>Ggra3323.t1 ID=Ggra3323.t1|Name=Ggra3323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=188bp
MPLSPLYPTATIAPLLRFVQPHVETTAPFDMLPLICPVVTVDHDGAALPD
AGPDARLHDQTHYVELCDRFDRMMPHEALLFFTSGTTGVPKCVVWTVDRL
MYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHST
FDAHSVWWSILGESQLQPPTVYKNHKTRKSIRWQSRV*

spliced messenger RNA

>Ggra3323.t1 ID=Ggra3323.t1|Name=Ggra3323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000232_pilon:28819..29382+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGTCGCCTCTGTACCCTACCGCCACAATCGCCCCGCTGCTGCG
CTTCGTGCAGCCGCACGTCGAAACCACCGCGCCTTTCGACATGCTGCCGC
TCATTTGCCCGGTCGTCACCGTCGACCACGACGGCGCCGCGCTGCCCGAC
GCCGGCCCCGACGCCCGGCTGCACGACCAGACGCACTACGTGGAGCTGTG
CGATCGCTTCGACCGCATGATGCCGCATGAGGCACTGCTTTTCTTCACAT
CAGGCACCACCGGCGTGCCGAAGTGCGTTGTGTGGACCGTTGACAGGCTC
ATGTACCAGCTACGCACGCTATCGCACGCGTGGCACTGGTCGCAGCACGA
TCGCGTGCTCAAATTGCTGCTGCTGCATCACATTCACGGCCTGGTCAACG
TCGTGCTAGGCTCGCTGTACAACGGCGCGTCGCTGGAGGTGCACTCCACC
TTCGACGCCCACTCCGTGTGGTGGTCCATTCTGGGCGAGTCGCAGCTGCA
GCCGCCCACCGTGTATAAGAAccacaaaacgagaaagtcgatacgctggc
aaagtcgggtttga

protein sequence of Ggra3323.t1

>Ggra3323.t1 ID=Ggra3323.t1|Name=Ggra3323.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=188bp
MPLSPLYPTATIAPLLRFVQPHVETTAPFDMLPLICPVVTVDHDGAALPD
AGPDARLHDQTHYVELCDRFDRMMPHEALLFFTSGTTGVPKCVVWTVDRL
MYQLRTLSHAWHWSQHDRVLKLLLLHHIHGLVNVVLGSLYNGASLEVHST
FDAHSVWWSILGESQLQPPTVYKNHKTRKSIRWQSRV*

mRNA from alignment at tig00000232_pilon:28819..29382+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra3323.t1 ID=Ggra3323.t1|Name=Ggra3323.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=564bp|location=Sequence derived from alignment at tig00000232_pilon:28819..29382+ (Gracilaria gracilis GNS1m male)
ATGCCGCTGTCGCCTCTGTACCCTACCGCCACAATCGCCCCGCTGCTGCG
CTTCGTGCAGCCGCACGTCGAAACCACCGCGCCTTTCGACATGCTGCCGC
TCATTTGCCCGGTCGTCACCGTCGACCACGACGGCGCCGCGCTGCCCGAC
GCCGGCCCCGACGCCCGGCTGCACGACCAGACGCACTACGTGGAGCTGTG
CGATCGCTTCGACCGCATGATGCCGCATGAGGCACTGCTTTTCTTCACAT
CAGGCACCACCGGCGTGCCGAAGTGCGTTGTGTGGACCGTTGACAGGCTC
ATGTACCAGCTACGCACGCTATCGCACGCGTGGCACTGGTCGCAGCACGA
TCGCGTGCTCAAATTGCTGCTGCTGCATCACATTCACGGCCTGGTCAACG
TCGTGCTAGGCTCGCTGTACAACGGCGCGTCGCTGGAGGTGCACTCCACC
TTCGACGCCCACTCCGTGTGGTGGTCCATTCTGGGCGAGTCGCAGCTGCA
GCCGCCCACCGTGTATAAGAAccacaaaacgagaaagtcgatacgctggc
aaagtcgggtttga

Coding sequence (CDS) from alignment at tig00000232_pilon:28819..29382+

>Ggra3323.t1 ID=Ggra3323.t1|Name=Ggra3323.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=564bp|location=Sequence derived from alignment at tig00000232_pilon:28819..29382+ (Gracilaria gracilis GNS1m male)
ATGCCGCTGTCGCCTCTGTACCCTACCGCCACAATCGCCCCGCTGCTGCG
CTTCGTGCAGCCGCACGTCGAAACCACCGCGCCTTTCGACATGCTGCCGC
TCATTTGCCCGGTCGTCACCGTCGACCACGACGGCGCCGCGCTGCCCGAC
GCCGGCCCCGACGCCCGGCTGCACGACCAGACGCACTACGTGGAGCTGTG
CGATCGCTTCGACCGCATGATGCCGCATGAGGCACTGCTTTTCTTCACAT
CAGGCACCACCGGCGTGCCGAAGTGCGTTGTGTGGACCGTTGACAGGCTC
ATGTACCAGCTACGCACGCTATCGCACGCGTGGCACTGGTCGCAGCACGA
TCGCGTGCTCAAATTGCTGCTGCTGCATCACATTCACGGCCTGGTCAACG
TCGTGCTAGGCTCGCTGTACAACGGCGCGTCGCTGGAGGTGCACTCCACC
TTCGACGCCCACTCCGTGTGGTGGTCCATTCTGGGCGAGTCGCAGCTGCA
GCCGCCCACCGTGTATAAGAAccacaaaacgagaaagtcgatacgctggc
aaagtcgggtttga