Ggra3327.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra3327.t1
Unique NameGgra3327.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length192
Homology
BLAST of Ggra3327.t1 vs. uniprot
Match: A0A2V3ILC0 (Ephrin_rec_like domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILC0_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 4.820e-75
Identity = 110/197 (55.84%), Postives = 137/197 (69.54%), Query Frame = 0
Query:    1 MPTVILAVVTPCSPGY----GNGPNGCQPCQPGTFQPAANLEACLQCPEPYATPRIGATQCDYCWANNTVPNKPQTRCIALNSAEAIVNALEGTYENLLYSGNQKNDWHYVQITAKPNSEDELTWSNRAGVQWTLKLKESSGGYERGSFIVEADSPYHSSGHTSGVINWS--EPGDFDIGNYVLGVTGPWNELYTRV 191
            +PT+I A  TPC  GY     +G   C PC+PG FQP  NLE+C  CPE +A+   G+  C++C+ N+TVP+K QT CIA NSAE IVNAL G YEN+LYSG+ KN WHYVQI+AK  S  EL WSN+AGV W LKL+    GY R  F+VE DSPY+++GHT+G + W+  +   F+ GN VL VTGPWNE YTRV
Sbjct:   12 LPTLIYAGTTPCFAGYEPIFDSGSFTCTPCKPGFFQPGVNLESCYSCPEGHASSAAGSVACEFCYGNSTVPSKVQTACIARNSAENIVNALSGNYENMLYSGSGKNAWHYVQISAKEGSTTELIWSNQAGVTWILKLQPEGDGYNRDMFLVEPDSPYYNNGHTTGQVEWTIEDLDSFEAGNTVLSVTGPWNEPYTRV 208          
BLAST of Ggra3327.t1 vs. uniprot
Match: A0A2V3II04 (Uncharacterized protein n=3 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II04_9FLOR)

HSP 1 Score: 96.7 bits (239), Expect = 4.820e-20
Identity = 49/108 (45.37%), Postives = 64/108 (59.26%), Query Frame = 0
Query:   83 IVNALEGTYENLLYSGNQKNDWHYVQITAKPNSEDELTWSNRAGVQWTLKLKESSGGYERGSFIVEADSPYHSSGHTSGVINWSEPGDFDIGNYVLGVTGPWNELYTR 190
            +V ++ G+YENLLYSG+ KN+WH+VQI    NS   L W+N AGV+WTL ++   G  +  + +V ADSPYHS GHT   I             V  + GP NE YTR
Sbjct:  253 VVASVVGSYENLLYSGSGKNNWHFVQIEKVNNST--LRWTNSAGVKWTLYVRSVGGKVDTENLVVGADSPYHSRGHTIAKIERDSKSGM-----VTAIRGPGNEAYTR 353          
BLAST of Ggra3327.t1 vs. uniprot
Match: A0A7S2ELF5 (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ELF5_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.040e-8
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0
Query:   85 NALEGTYENLLYSGNQKNDWHYVQITAKPNSEDELTWSNRAGVQWTLKLKE 135
            N L G YEN LY G  KNDWHY ++T K ++ +E+ W+NRA V W+L + +
Sbjct:   53 NGLLGKYENHLYDGGGKNDWHYAELT-KGDAPNEIIWTNRANVSWSLFMTD 102          
BLAST of Ggra3327.t1 vs. uniprot
Match: A0A7M6DQD5 (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DQD5_9CNID)

HSP 1 Score: 57.0 bits (136), Expect = 1.220e-6
Identity = 34/105 (32.38%), Postives = 48/105 (45.71%), Query Frame = 0
Query:   89 GTYENLLYSGNQKNDWHYVQITAKPNSEDELTWSNRAGVQWTLKLKESSGGYERGSFI---VEADSPYHSSGHTSGVINWSEPGDFDIGNYVLGVTGPWNELYTR 190
            G +EN  Y    KNDWHYV I    +++ + TWSNRAGV+W++        Y+   F    V  DS Y+  G+     N              G+ GP+ E Y +
Sbjct:  123 GDFENHKYDVKGKNDWHYVHIDYDESTQ-KYTWSNRAGVKWSM--------YQTNVFNKLRVGEDSTYYEGGYKEATFNDK------------GIVGPFGEFYDK 206          
The following BLAST results are available for this feature:
BLAST of Ggra3327.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ILC04.820e-7555.84Ephrin_rec_like domain-containing protein n=1 Tax=... [more]
A0A2V3II044.820e-2045.37Uncharacterized protein n=3 Tax=Gracilariopsis cho... [more]
A0A7S2ELF51.040e-849.02Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7M6DQD51.220e-632.38Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM01411GCC2_GCC3_2coord: 15..60
e-value: 6.0E-7
score: 39.1
NoneNo IPR availableGENE3D2.10.50.10Tumor Necrosis Factor Receptor, subunit A, domain 2coord: 12..74
e-value: 4.3E-9
score: 38.3
IPR011641Tyrosine-protein kinase ephrin type A/B receptor-likePFAMPF07699Ephrin_rec_likecoord: 17..60
e-value: 1.8E-5
score: 24.4
IPR009030Growth factor receptor cysteine-rich domain superfamilySUPERFAMILY57184Growth factor receptor domaincoord: 11..75

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000232_piloncontigtig00000232_pilon:71225..71800 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra3327.t1Ggra3327.t1Gracilaria gracilis GNS1m malemRNAtig00000232_pilon 71225..71800 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra3327.t1 ID=Ggra3327.t1|Name=Ggra3327.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=192bp
MPTVILAVVTPCSPGYGNGPNGCQPCQPGTFQPAANLEACLQCPEPYATP
RIGATQCDYCWANNTVPNKPQTRCIALNSAEAIVNALEGTYENLLYSGNQ
KNDWHYVQITAKPNSEDELTWSNRAGVQWTLKLKESSGGYERGSFIVEAD
SPYHSSGHTSGVINWSEPGDFDIGNYVLGVTGPWNELYTRV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011641Tyr-kin_ephrin_A/B_rcpt-like
IPR009030Growth_fac_rcpt_cys_sf