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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Seed ortholog | 314271.RB2654_08177 |
| PFAMs | Glyco_transf_7C |
| Max annot lvl | 28211|Alphaproteobacteria |
| Evalue | 1.84e-09 |
| EggNOG OGs | COG1216@1|root,COG1216@2|Bacteria,1MZBS@1224|Proteobacteria,2UEUD@28211|Alphaproteobacteria |
| Description | N-terminal domain of galactosyltransferase |
| COG category | S |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| Ggra2020.t1.start1 | Ggra2020.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000226_pilon 42301..42303 - |
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra2020.t1 ID=Ggra2020.t1|Name=Ggra2020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=657bp MSVTSASGDSLKGARPFFAPALSRKLSSKKRSIPLRLSRRLLRLPTNVLF LLHRLSSSRKSCLNSPLAVVSLGIFISLSLTVLTSLLIAFRIPSDYHLSA PQLSSNGVSRIGAPVPEHAQHGFVTNALANNFDIPPSLTKKLQPAQRFEL LTNLQNVHSSKKRAPKRLFFLHVVGTVAANRLNTLATAISYAKNTNRFLL VLWDIKRGGEQLGAEPLVPLSTLDQHNTMLVYVSSLQLTPNSSDWSEFQI NYYTNFGSGGYPLDNVAALANRHIFYRAQEEVEGRYAAASQGVVLMEKLF QPSQQFQSLWNDFFKEWTFPGLSTADVRDVLNRVYGVPQIFIDSMADASQ RKLLRELDRSKSKRAFFIHAQYGLGNRLRALGSAMAISKETGRVLVLIWE PDVHLNCRFSDLFANDMVILEKLNMNWPPGDANTKDHAMRTVDFYNFMRF NGKHIHNPLTELVNPRMGRHVYVKTAYVVRSSFTPRIISTTSKYWKTMRD TLVPNAEIMYLVNDPSFINIKGMVGVHIRSRTIENDIKGVSEEFYGNGSR VTDHWRRITGLKTFENKIMRLSLRYKFFVAADNRDAIRELERKFGTHRIF SIPRDQDCVTRDVELSVKSNHTGAGTTLRRNGDSHITDYRFASATFPQGG LLFISC* back to topspliced messenger RNA >Ggra2020.t1 ID=Ggra2020.t1|Name=Ggra2020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1971bp|location=Sequence derived from alignment at tig00000226_pilon:38326..42303- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCAGTCACATCCGCGTCTGGCGATTCCCTCAAAGGCGCTCGACCCTT CTTTGCTCCTGCTTTAAGTCGGAAGCTATCATCGAAGAAGCGCTCCATCC CCCTTCGCCTATCGCGTCGTTTGTTACGACTTCCGACCAATGTCCTCTTC CTTCTTCACAGACTGTCTTCAAGTCGAAAGAGCTGTCTCAATTCCCCCCT CGCCGTTGTATCTCTCGGCATTTTCATATCCCTTTCGCTAACTGTTCTAA CCTCACTGCTCATTGCGTTCCGTATCCCATCTGACTATCACTTGTCTGCC CCACAACTTTCCTCCAACGGTGTTTCCCGAATTGGTGCACCAGTTCCAGA GCACGCACAACACGGTTTTGTTACTAATGCTCTTGCCAATAACTTCGACA TTCCACCAAGCCTCACTAAAAAGCTACAGCCAGCTCAGCGCTTCGAGCTT CTTACCAACCTCCAGAACGTCCACAGTTCGAAGAAGCGTGCCCCAAAACG TCTCTTTTTCCTCCATGTCGTTGGAACTGTTGCTGCCAACCGCCTCAATA CGCTTGCTACAGCCATTTCATATGCAAAGAACACCAATCGTTTTCTCCTT GTACTGTGGGACATCAAGCGTGGGGGCGAGCAATTGGGCGCCGAACCGCT TGTTCCATTGTCCACGCTCGACCAACATAACACAATGCTTGTGTATGTCA GTTCGCTGCAGCTCACGCCCAACTCTTCAGACTGGAGCGAATTCCAGATC AACTACTATACAAACTTCGGGTCTGGAGGCTATCCCCTCGACAACGTCGC TGCACTTGCTAATCGCCATATTTTTTACCGCGCCCAGGAAGAGGTCGAAG GAAGGTACGCCGCCGCATCACAAGGAGTAGTGCTCATGGAAAAACTATTC CAACCGAGTCAACAGTTCCAATCTCTCTGGAACGACTTCTTTAAGGAATG GACTTTTCCGGGCTTGTCTACTGCAGATGTTCGCGACGTTCTCAATCGAG TCTATGGCGTTCCTCAAATTTTCATCGATAGCATGGCAGATGCCTCTCAA AGAAAGCTGTTACGCGAGTTGGACCGGTCCAAGTCTAAGCGCGCATTTTT CATACATGCTCAGTATGGGCTGGGTAATCGCCTGAGAGCGTTGGGATCCG CAATGGCCATCTCAAAAGAGACTGGCCGTGTCTTGGTTTTGATATGGGAA CCTGACGTTCACCTCAACTGTCGCTTCTCAGATCTATTTGCGAATGATAT GGTTATCCTGGAAAAGTTGAACATGAATTGGCCTCCAGGTGATGCCAATA CGAAAGACCACGCCATGCGAACAGTAGACTTCTACAATTTTATGCGCTTT AATGGCAAGCATATTCACAATCCACTCACAGAACTGGTGAATCCAAGAAT GGGACGTCATGTGTATGTGAAGACGGCTTATGTTGTGCGCTCCAGCTTCA CTCCTCGAATCATATCTACAACCTCCAAGTATTGGAAGACGATGCGTGAT ACGCTTGTACCAAATGCAGAGATTATGTATCTCGTGAATGATCCATCCTT CATAAATATCAAGGGCATGGTTGGTGTGCATATCAGGTCACGAACTATCG AAAATGATATCAAAGGTGTTAGTGAGGAGTTCTATGGAAACGGTTCTAGA GTTACCGATCACTGGCGTCGAATAACAGGGTTGAAAACGTTTGAGAACAA GATCATGCGCTTAAGCCTGCGGTACAAGTTCTTCGTCGCGGCAGATAACA GGGATGCGATACGGGAGCTTGAACGCAAGTTTGGTACACATAGAATATTC AGCATTCCAAGGGACCAAGACTGTGTGACCAGGGATGTAGAATTATCCGT GAAGTCGAATCACACTGGTGCAGGCACAACACTGCGCAGGAACGGAGACA GCCATATCACAGATTACAGATTTGCTTCTGCAACCTTCCCGCAAGGCGGC CTTTTGTTCATTTCTTGCTGA back to topprotein sequence of Ggra2020.t1 >Ggra2020.t1 ID=Ggra2020.t1|Name=Ggra2020.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=657bp
MSVTSASGDSLKGARPFFAPALSRKLSSKKRSIPLRLSRRLLRLPTNVLF LLHRLSSSRKSCLNSPLAVVSLGIFISLSLTVLTSLLIAFRIPSDYHLSA PQLSSNGVSRIGAPVPEHAQHGFVTNALANNFDIPPSLTKKLQPAQRFEL LTNLQNVHSSKKRAPKRLFFLHVVGTVAANRLNTLATAISYAKNTNRFLL VLWDIKRGGEQLGAEPLVPLSTLDQHNTMLVYVSSLQLTPNSSDWSEFQI NYYTNFGSGGYPLDNVAALANRHIFYRAQEEVEGRYAAASQGVVLMEKLF QPSQQFQSLWNDFFKEWTFPGLSTADVRDVLNRVYGVPQIFIDSMADASQ RKLLRELDRSKSKRAFFIHAQYGLGNRLRALGSAMAISKETGRVLVLIWE PDVHLNCRFSDLFANDMVILEKLNMNWPPGDANTKDHAMRTVDFYNFMRF NGKHIHNPLTELVNPRMGRHVYVKTAYVVRSSFTPRIISTTSKYWKTMRD TLVPNAEIMYLVNDPSFINIKGMVGVHIRSRTIENDIKGVSEEFYGNGSR VTDHWRRITGLKTFENKIMRLSLRYKFFVAADNRDAIRELERKFGTHRIF SIPRDQDCVTRDVELSVKSNHTGAGTTLRRNGDSHITDYRFASATFPQGG LLFISC* back to topmRNA from alignment at tig00000226_pilon:38326..42303- Legend: polypeptideCDSexonstart_codonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra2020.t1 ID=Ggra2020.t1|Name=Ggra2020.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=3978bp|location=Sequence derived from alignment at tig00000226_pilon:38326..42303- (Gracilaria gracilis GNS1m male) ATGTCAGTCACATCCGCGTCTGGCGATTCCCTCAAAGGCGCTCGACCCTT
CTTTGCTCCTGCTTTAAGTCGGAAGCTATCATCGAAGAAGCGCTCCATCC
CCCTTCGCCTATCGCGTCGTTTGTTACGACTTCCGACCAATGTCCTCTTC
CTTCTTCACAGACTGTCTTCAAGTCGAAAGAGCTGTCTCAATTCCCCCCT
CGCCGTTGTATCTCTCGGCATTTTCATATCCCTTTCGCTAACTGTTCTAA
CCTCACTGCTCATTGCGTTCCGTATCCCATCTGACTATCACTTGTCTGCC
CCACAACTTTCCTCCAACGGTGTTTCCCGAATTGGTGCACCAGTTCCAGA
GCACGCACAACACGGTTTTGTTACTAATGCTCTTGCCAATAACTTCGACA
TTCCACCAAGCCTCACTAAAAAGCTACAGCCAGCTCAGCGCTTCGAGCTT
CTTACCAACCTCCAGAACGTCCACAGTTCGAAGAAGCGTGCCCCAAAACG
TCTCTTTTTCCTCCATGTCGTTGGAACTGTTGCTGCCAACCGCCTCAATA
CGCTTGCTACAGCCATTTCATATGCAAAGAACACCAATCGTTTTCTCCTT
GTACTGTGGGACATCAAGCGTGGGGGCGAGCAATTGGGCGCCGAACCGCT
TGTTCCATTGTCCACGCTCGACCAACATAACACAATGCTTGTGTATGTCA
GTTCGCTGCAGCTCACGCCCAACTCTTCAGACTGGAGCGAATTCCAGATC
AACTACTATACAAACTTCGGGTCTGGAGGCTATCCCCTCGACAACGTCGC
TGCACTTGCTAATCGCCATATTTTTTACCGCGCCCAGGAAGAGGTCGAAG
GAAGGTACGCCGCCGCATCACAAGGAGTAGTGCTCATGGAAAAACTATTC
CAACCGAGTCAACAGTTCCAATCTCTCTGGAACGACTTCTTTAAGGAATG
GACTTTTCCGGGCTTGTCTACTGCAGATGTTCGCGACGTTCTCAATCGAG
TCTATGGCGTTCCTCAAATTTTCATCGATAGCATGGCAGATGCCTCTCAA
AGAAAGCTGTTACGCGAGTTGGACCGGTCCAAGTCTAAGCGCGCATTTTT
CATACATGCTCAGTATGGGCTGGGTAATCGCCTGAGAGCGTTGGGATCCG
CAATGGCCATCTCAAAAGAGACTGGCCGTGTCTTGGTTTTGATATGGGAA
CCTGACGTTCACCTCAACTGTCGCTTCTCAGATCTATTTGCGAATGATAT
GGTTATCCTGGAAAAGTTGAACATGAATTGGCCTCCAGGTGATGCCAATA
CGAAAGACCACGCCATGCGAACAGTAGACTTCTACAATTTTATGCGCTTT
AATGGCAAGCATATTCACAATCCACTCACAGAACTGGTGAATCCAAGAAT
GGGACGTCATGTGTATGTGAAGACGGCTTATGTTGTGCGCTCCAGCTTCA
CTCCTCGAATCATATCTACAACCTCCAAGTATTGGAAGACGATGCGTGAT
ACGCTTGTACCAAATGCAGAGATTATGTATCTCGTGAATGATCCATCCTT
CATAAATATCAAGGGCATGGTTGGTGTGCATATCAGGTCACGAACTATCG
AAAATGATATCAAAGGTGTTAGTGAGGAGTTCTATGGAAACGGTTCTAGA
GTTACCGATCACTGGCGTCGAATAACAGGGTTGAAAACGTTTGAGAACAA
GATCATGCGCTTAAGCCTGCGGTACAAGTTCTTCGTCGCGGCAGATAACA
GGGATGCGATACGGGAGCTTGAACGCAAGTTTGGTACACATAGAATATTC
AGCATTCCAAGGGACCAAGACTGTGTGACCAGGGATGTAGAGTGTGCCAA
GCTCGCTTTGGCAGATATTCTTCTTCTTTCAAAGGTACCAACTCTCTTGG
GAAGTCACTGGAGTTCTTTCACTGAAGGAGCAGTACGACTATCAGGAAAG
ATAAAGGTGCTGTTGGCAGGAGTTCATTTCGGAAGACCGAAATGAGAATA
GGGATAGTTCTTCTGCGCTCATGAGAGACATTTCGTATGGATGTGCGAAT
GCGCTTTTGGACCCACGGGAATTTGTTGTCAGCTACCCTTGGTAAGTGTT
GATGTTGGACTGATGCGATTTCCAATTGTAGCTGCCATGAAAGTTTTGTC
AAGAAGATAGTATGGTCTATGACGTGAACATGACTTCTTCTTTGTGCTGC
GAAGGGTTTCGGGGCGCTTAAGTGACCTATTTTGTACGGAAGGACAGAGC
GTAGTATAATGTGTATGGATGAATCGTTTGTGCTCCAACGGAACTATGTC
GTCTGAGTGTCGGCACGGAATTCAAGGGTGGATTTGTGACCATGAGGAGT
GGTATGGAAACAGCTCAGCTTCTTCGTTATCAAACTATCAAGTTGTGATG
GTAGAGTAGATGTAGAGAAGATAGGGAATCGAGAAGCTTTCCTCCTGCCG
AACTGTTGGATTGTATGTAAATTATGAGTCAACTCACCCACGCAGGAAGC
CTGCTGAAGGGAAGACAAGTGATGGAAAACCTCAATTTGGAAATGCGAGT
GAAGTTCGTTGCGACATTTGCTCTTATTGTTCTTGGGAATGGTATTAGGA
GATGTATTGGAGTTCTCGAACGGTTGAAGTACCTCTTCTTGGATCTACAA
CAATTTTGCCTGTTACGTAACGCGACTCGAAATCGTCTCACAGGAATCCA
TCACCAAAGCAAACGAAATACTGTAGACAACTGACATTGGGAGTTGTCCT
TTTGCGGTAGATTCTTTTCTGCCTCAGCAAGTCAAATCGCCCCAATGGAA
TTCTAATCAACCAGGAGAGTATGCTCAGCGAGAGTCAGTTCAGATCCGCT
TTGTAGGGAATGGGGAAAAGTCGGCTGTTTCTGATTTATACGTGTTTATA
AAACTACGAGTCTTGAGCAACACACAGCGCGTCATTATTTGTTTTCTTGC
TTCACGTGTGTATCTAGATAATGTAGATGCACTATCTAACTAGTCGCAGA
TGATGCTCGTGACAAGAATGTTGTCTATGGCCCTATCCATCCACGAAACG
TTCGTTAATCCTTTAAAGCAAGTACACTAAGGTTGCCTTGGGCTATTCAC
CGGCATGTTCCCATTTACGGAGGTAACGTTACATGTCATTTCAAGGACGA
CTCCTCCCAATTAAACAACAAAGACCACACCCTTTGAGGGTTGCATCTTT
GCGGCTAGACGCAATGGTAACGGGTTTCGAGAACTGTTCCATTCTAAATG
GAACAAAACGGTCAGAGAGATTTAAGAGAGCATCCGGAGTTTAACGAACG
CTACCAATGGTAGCAGTTGGAGTCGCAAGCGTTGGGTGGACTTGGCGCGG
CGGGGGAGAGAAAGATCGATCAATGGTTGTACAAGTGGATATGTAGTACA
TATTGCATATGTACTACGGCAACGTTACCGTCGAAACAGGAGGTGAAATT
CTGTAGCCCTTGTCTATCTACGTGTACAGTAATCTTTGGTCCAACGCAAG
GTCAAGTCGATATCTGGTGCAATTTACAAACGTGACTAGAATTGGGCAGT
TCAGAATCTGAACACATGAGCGGCTGGGCAGTCCCAAGTTACCGTTCTAC
CAGAGCTAGCCCTCTTTAAACAGCAACTTTAGAGCTGGGCAGACTGCTAT
CGCTGACAACAAGCGGAGGCAGTTTTGGCAACAAAGTTTGTCTACCTGAT
TGCCGAAAGATTATCCGTGAAGTCGAATCACACTGGTGCAGGCACAACAC
TGCGCAGGAACGGAGACAGCCATATCACAGATTACAGATTTGCTTCTGCA
ACCTTCCCGCAAGGCGGCCTTTTGTTCATTTCTTGGTTCGTTCTTTTCTC
TTCCCTAGTAGAAGGGGGGTGGTCATATCAGAGGAGGCGGCGGGAACCCT
TATCTTCGCGTAGTATCTGAGTGAACGAGATTCTGGGGCTCGTCAACTAA
CTGGTTTGTACGAAATCGTCCCAGCTGA back to topCoding sequence (CDS) from alignment at tig00000226_pilon:38326..42303- >Ggra2020.t1 ID=Ggra2020.t1|Name=Ggra2020.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1971bp|location=Sequence derived from alignment at tig00000226_pilon:38326..42303- (Gracilaria gracilis GNS1m male) ATGTCAGTCACATCCGCGTCTGGCGATTCCCTCAAAGGCGCTCGACCCTT CTTTGCTCCTGCTTTAAGTCGGAAGCTATCATCGAAGAAGCGCTCCATCC CCCTTCGCCTATCGCGTCGTTTGTTACGACTTCCGACCAATGTCCTCTTC CTTCTTCACAGACTGTCTTCAAGTCGAAAGAGCTGTCTCAATTCCCCCCT CGCCGTTGTATCTCTCGGCATTTTCATATCCCTTTCGCTAACTGTTCTAA CCTCACTGCTCATTGCGTTCCGTATCCCATCTGACTATCACTTGTCTGCC CCACAACTTTCCTCCAACGGTGTTTCCCGAATTGGTGCACCAGTTCCAGA GCACGCACAACACGGTTTTGTTACTAATGCTCTTGCCAATAACTTCGACA TTCCACCAAGCCTCACTAAAAAGCTACAGCCAGCTCAGCGCTTCGAGCTT CTTACCAACCTCCAGAACGTCCACAGTTCGAAGAAGCGTGCCCCAAAACG TCTCTTTTTCCTCCATGTCGTTGGAACTGTTGCTGCCAACCGCCTCAATA CGCTTGCTACAGCCATTTCATATGCAAAGAACACCAATCGTTTTCTCCTT GTACTGTGGGACATCAAGCGTGGGGGCGAGCAATTGGGCGCCGAACCGCT TGTTCCATTGTCCACGCTCGACCAACATAACACAATGCTTGTGTATGTCA GTTCGCTGCAGCTCACGCCCAACTCTTCAGACTGGAGCGAATTCCAGATC AACTACTATACAAACTTCGGGTCTGGAGGCTATCCCCTCGACAACGTCGC TGCACTTGCTAATCGCCATATTTTTTACCGCGCCCAGGAAGAGGTCGAAG GAAGGTACGCCGCCGCATCACAAGGAGTAGTGCTCATGGAAAAACTATTC CAACCGAGTCAACAGTTCCAATCTCTCTGGAACGACTTCTTTAAGGAATG GACTTTTCCGGGCTTGTCTACTGCAGATGTTCGCGACGTTCTCAATCGAG TCTATGGCGTTCCTCAAATTTTCATCGATAGCATGGCAGATGCCTCTCAA AGAAAGCTGTTACGCGAGTTGGACCGGTCCAAGTCTAAGCGCGCATTTTT CATACATGCTCAGTATGGGCTGGGTAATCGCCTGAGAGCGTTGGGATCCG CAATGGCCATCTCAAAAGAGACTGGCCGTGTCTTGGTTTTGATATGGGAA CCTGACGTTCACCTCAACTGTCGCTTCTCAGATCTATTTGCGAATGATAT GGTTATCCTGGAAAAGTTGAACATGAATTGGCCTCCAGGTGATGCCAATA CGAAAGACCACGCCATGCGAACAGTAGACTTCTACAATTTTATGCGCTTT AATGGCAAGCATATTCACAATCCACTCACAGAACTGGTGAATCCAAGAAT GGGACGTCATGTGTATGTGAAGACGGCTTATGTTGTGCGCTCCAGCTTCA CTCCTCGAATCATATCTACAACCTCCAAGTATTGGAAGACGATGCGTGAT ACGCTTGTACCAAATGCAGAGATTATGTATCTCGTGAATGATCCATCCTT CATAAATATCAAGGGCATGGTTGGTGTGCATATCAGGTCACGAACTATCG AAAATGATATCAAAGGTGTTAGTGAGGAGTTCTATGGAAACGGTTCTAGA GTTACCGATCACTGGCGTCGAATAACAGGGTTGAAAACGTTTGAGAACAA GATCATGCGCTTAAGCCTGCGGTACAAGTTCTTCGTCGCGGCAGATAACA GGGATGCGATACGGGAGCTTGAACGCAAGTTTGGTACACATAGAATATTC AGCATTCCAAGGGACCAAGACTGTGTGACCAGGGATGTAGAATTATCCGT GAAGTCGAATCACACTGGTGCAGGCACAACACTGCGCAGGAACGGAGACA GCCATATCACAGATTACAGATTTGCTTCTGCAACCTTCCCGCAAGGCGGC CTTTTGTTCATTTCTTGCTGA back to top
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