Ggra10789.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10789.t1
Unique NameGgra10789.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length69
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000225_piloncontigtig00000225_pilon:40984..41276 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10789Ggra10789Gracilaria gracilis GNS1m malegenetig00000225_pilon 40984..41276 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10789.t1Ggra10789.t1Gracilaria gracilis GNS1m malepolypeptidetig00000225_pilon 40984..41276 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10789.t1.start1Ggra10789.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000225_pilon 40984..40986 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10789.t1.CDS1Ggra10789.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000225_pilon 40984..41118 +
Ggra10789.t1.CDS2Ggra10789.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000225_pilon 41205..41276 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10789.t1.exon1Ggra10789.t1.exon1Gracilaria gracilis GNS1m maleexontig00000225_pilon 40984..41118 +
Ggra10789.t1.exon2Ggra10789.t1.exon2Gracilaria gracilis GNS1m maleexontig00000225_pilon 41205..41276 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10789.t1.intron1Ggra10789.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000225_pilon 41119..41204 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10789.t1.stop1Ggra10789.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000225_pilon 41274..41276 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10789.t1 ID=Ggra10789.t1|Name=Ggra10789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=69bp
MPTVGSDSKPKAHVRPSSRSNRKRSASTSCHSSILPARVHAKLVKAAHKM
ERGLRCSSCGTAFGIKPS*
back to top

spliced messenger RNA

>Ggra10789.t1 ID=Ggra10789.t1|Name=Ggra10789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=207bp|location=Sequence derived from alignment at tig00000225_pilon:40984..41276+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCACAGTCGGAAGCGACAGCAAGCCGAAAGCTCATGTACGACCCTC
TTCGCGCTCCAACCGAAAGCGCTCCGCCTCTACTAGCTGTCACTCTTCAA
TTCTACCAGCTCGCGTGCACGCCAAACTCGTCAAAGCCGCGCACAAAATG
GAGCGTGGGCTGCGTTGCAGCAGTTGTGGAACGGCTTTCGGTATCAAACC
AAGCTAA
back to top

protein sequence of Ggra10789.t1

>Ggra10789.t1 ID=Ggra10789.t1|Name=Ggra10789.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=69bp
MPTVGSDSKPKAHVRPSSRSNRKRSASTSCHSSILPARVHAKLVKAAHKM
ERGLRCSSCGTAFGIKPS*
back to top

mRNA from alignment at tig00000225_pilon:40984..41276+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10789.t1 ID=Ggra10789.t1|Name=Ggra10789.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=293bp|location=Sequence derived from alignment at tig00000225_pilon:40984..41276+ (Gracilaria gracilis GNS1m male)
ATGCCCACAGTCGGAAGCGACAGCAAGCCGAAAGCTCATGTACGACCCTC
TTCGCGCTCCAACCGAAAGCGCTCCGCCTCTACTAGCTGTCACTCTTCAA
TTCTACCAGCTCGCGTGCACGCCAAACTCGTCAAAGTAAGTCACCTTCAC
CCCCGCTCGTCTCTTGTTCCCCTGTAATCGTTTCTAAACCCTCCCTCTCA
ACGCCTTCTTTCATCGGTCAGGCCGCGCACAAAATGGAGCGTGGGCTGCG
TTGCAGCAGTTGTGGAACGGCTTTCGGTATCAAACCAAGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000225_pilon:40984..41276+

>Ggra10789.t1 ID=Ggra10789.t1|Name=Ggra10789.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=207bp|location=Sequence derived from alignment at tig00000225_pilon:40984..41276+ (Gracilaria gracilis GNS1m male)
ATGCCCACAGTCGGAAGCGACAGCAAGCCGAAAGCTCATGTACGACCCTC
TTCGCGCTCCAACCGAAAGCGCTCCGCCTCTACTAGCTGTCACTCTTCAA
TTCTACCAGCTCGCGTGCACGCCAAACTCGTCAAAGCCGCGCACAAAATG
GAGCGTGGGCTGCGTTGCAGCAGTTGTGGAACGGCTTTCGGTATCAAACC
AAGCTAA
back to top