Ggra10790.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10790.t1
Unique Name	Ggra10790.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	486

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000225_pilon	contig	tig00000225_pilon:42257..43714 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10790	Ggra10790	Gracilaria gracilis GNS1m male	gene	tig00000225_pilon 42257..43714 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10790.t1.start1	Ggra10790.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000225_pilon 42257..42259 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10790.t1.CDS1	Ggra10790.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000225_pilon 42257..43714 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10790.t1.exon1	Ggra10790.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000225_pilon 42257..43714 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10790.t1.stop1	Ggra10790.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000225_pilon 43712..43714 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10790.t1	Ggra10790.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000225_pilon 42257..43714 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000225_pilon:42257..43714+
coding sequence from alignment at tig00000225_pilon:42257..43714+

mRNA sequence

>Ggra10790.t1 ID=Ggra10790.t1|Name=Ggra10790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=486bp
MAIRTNISVSVFNIIRYLILGTGLDFIVRRSLDSFEHFRRRLSLYRGHSV
SVAGHRIDRYNTLKVLTTGHLLSGSVLLLVSALAYTAELALEYAVDSSAI
RYAIPGNVTRVEQREGVCSREEMIASGNALDIAFIADQCVKLEDNTYSFY
RPVWVKSTSSKDRVNDDGLRVLCEAVEGNIMYEGDGIYGPSTTGKRSPEV
LELIQMLSENSYKTVGDKFLPLFVIKVSSSDILQTLWFATPSEQFSLSVF
YANITGSSVQCMGSIIAGVERQDTSVVQVVACMDGFDEDSSLVLTSGSSF
IEVESDDDADGVSNAWSTLVAFEIRTRIPRFFKGIRADDSSSRANAEGYS
SFLARSFPQDVVTLNKYAIAYRFCDDIPLPVRNGTFWEEEYEFASSEVRV
TATVEEWAIVLAVCWVMVVTVAHLLVSLVAARKNMPDKVLGEQDILLRWA
AENEGKQMEGRGTVALLSVEGGAKGGRITATLKRA*

spliced messenger RNA

>Ggra10790.t1 ID=Ggra10790.t1|Name=Ggra10790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000225_pilon:42257..43714+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCAATTCGGACCAACATAAGCGTGAGCGTCTTCAACATTATCCGTTA
CCTCATTCTGGGTACTGGGCTTGACTTCATCGTGCGAAGGAGTCTTGACA
GTTTTGAACACTTCCGTCGTCGCCTCAGCCTTTATCGCGGACATTCGGTC
TCTGTAGCAGGCCATCGCATAGACCGGTATAATACGCTCAAAGTACTGAC
AACTGGCCATCTACTGTCAGGCTCGGTGCTGCTGTTGGTCAGTGCTCTGG
CCTACACCGCAGAGCTTGCGCTGGAGTACGCGGTGGACTCGAGCGCCATT
CGTTATGCCATTCCAGGTAACGTGACACGCGTGGAACAAAGGGAAGGTGT
CTGCTCGCGAGAGGAGATGATCGCAAGTGGAAACGCTCTGGACATTGCAT
TCATCGCCGATCAATGTGTCAAATTGGAAGACAACACTTACAGCTTCTAC
CGCCCAGTGTGGGTGAAATCAACAAGTTCGAAGGATAGAGTGAACGACGA
TGGACTGCGAGTGCTCTGTGAAGCCGTCGAGGGCAACATAATGTACGAAG
GAGATGGTATCTATGGCCCTTCTACCACCGGCAAGCGATCTCCAGAAGTG
CTCGAGCTGATCCAGATGCTCAGTGAGAACTCATATAAAACAGTTGGAGA
TAAGTTTCTGCCGCTGTTCGTGATAAAAGTAAGTTCCAGCGATATATTGC
AAACACTTTGGTTCGCTACGCCTTCAGAACAGTTTTCCCTCTCGGTTTTC
TATGCGAATATCACCGGAAGCTCTGTGCAGTGCATGGGCAGCATCATAGC
TGGCGTTGAACGCCAAGACACGTCGGTGGTGCAAGTGGTAGCATGTATGG
ATGGTTTCGATGAGGACAGTTCGCTCGTTCTTACCTCTGGTTCGAGTTTC
ATTGAGGTTGAGTCCGACGACGATGCCGATGGTGTCAGCAATGCATGGAG
CACGCTGGTTGCGTTCGAGATACGCACGCGTATACCGCGGTTCTTCAAGG
GAATCAGAGCAGATGATTCCAGCTCTCGAGCGAACGCGGAAGGTTATTCT
TCGTTTCTTGCGCGCTCCTTCCCGCAAGACGTGGTCACCCTCAACAAATA
CGCAATCGCGTATCGATTTTGCGATGATATTCCGCTGCCGGTAAGGAATG
GTACATTTTGGGAAGAAGAATATGAATTCGCGAGCTCAGAGGTGCGAGTG
ACGGCGACGGTGGAAGAGTGGGCGATCGTGCTGGCAGTTTGTTGGGTGAT
GGTGGTGACGGTGGCGCATTTGCTGGTGTCGTTGGTGGCGGCTCGGAAGA
ACATGCCCGACAAGGTGCTCGGGGAACAAGATATTCTTCTTCGGTGGGCG
GCAGAGAACGAAGGGAAGCAGATGGAAGGAAGGGGGACAGTGGCGCTCTT
GTCTGTTGAGGGAGGAGCAAAGGGCGGGCGCATCACTGCAACTCTGAAGC
GTGCATGA

protein sequence of Ggra10790.t1

>Ggra10790.t1 ID=Ggra10790.t1|Name=Ggra10790.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=486bp
MAIRTNISVSVFNIIRYLILGTGLDFIVRRSLDSFEHFRRRLSLYRGHSV
SVAGHRIDRYNTLKVLTTGHLLSGSVLLLVSALAYTAELALEYAVDSSAI
RYAIPGNVTRVEQREGVCSREEMIASGNALDIAFIADQCVKLEDNTYSFY
RPVWVKSTSSKDRVNDDGLRVLCEAVEGNIMYEGDGIYGPSTTGKRSPEV
LELIQMLSENSYKTVGDKFLPLFVIKVSSSDILQTLWFATPSEQFSLSVF
YANITGSSVQCMGSIIAGVERQDTSVVQVVACMDGFDEDSSLVLTSGSSF
IEVESDDDADGVSNAWSTLVAFEIRTRIPRFFKGIRADDSSSRANAEGYS
SFLARSFPQDVVTLNKYAIAYRFCDDIPLPVRNGTFWEEEYEFASSEVRV
TATVEEWAIVLAVCWVMVVTVAHLLVSLVAARKNMPDKVLGEQDILLRWA
AENEGKQMEGRGTVALLSVEGGAKGGRITATLKRA*

mRNA from alignment at tig00000225_pilon:42257..43714+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10790.t1 ID=Ggra10790.t1|Name=Ggra10790.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000225_pilon:42257..43714+ (Gracilaria gracilis GNS1m male)
ATGGCAATTCGGACCAACATAAGCGTGAGCGTCTTCAACATTATCCGTTA
CCTCATTCTGGGTACTGGGCTTGACTTCATCGTGCGAAGGAGTCTTGACA
GTTTTGAACACTTCCGTCGTCGCCTCAGCCTTTATCGCGGACATTCGGTC
TCTGTAGCAGGCCATCGCATAGACCGGTATAATACGCTCAAAGTACTGAC
AACTGGCCATCTACTGTCAGGCTCGGTGCTGCTGTTGGTCAGTGCTCTGG
CCTACACCGCAGAGCTTGCGCTGGAGTACGCGGTGGACTCGAGCGCCATT
CGTTATGCCATTCCAGGTAACGTGACACGCGTGGAACAAAGGGAAGGTGT
CTGCTCGCGAGAGGAGATGATCGCAAGTGGAAACGCTCTGGACATTGCAT
TCATCGCCGATCAATGTGTCAAATTGGAAGACAACACTTACAGCTTCTAC
CGCCCAGTGTGGGTGAAATCAACAAGTTCGAAGGATAGAGTGAACGACGA
TGGACTGCGAGTGCTCTGTGAAGCCGTCGAGGGCAACATAATGTACGAAG
GAGATGGTATCTATGGCCCTTCTACCACCGGCAAGCGATCTCCAGAAGTG
CTCGAGCTGATCCAGATGCTCAGTGAGAACTCATATAAAACAGTTGGAGA
TAAGTTTCTGCCGCTGTTCGTGATAAAAGTAAGTTCCAGCGATATATTGC
AAACACTTTGGTTCGCTACGCCTTCAGAACAGTTTTCCCTCTCGGTTTTC
TATGCGAATATCACCGGAAGCTCTGTGCAGTGCATGGGCAGCATCATAGC
TGGCGTTGAACGCCAAGACACGTCGGTGGTGCAAGTGGTAGCATGTATGG
ATGGTTTCGATGAGGACAGTTCGCTCGTTCTTACCTCTGGTTCGAGTTTC
ATTGAGGTTGAGTCCGACGACGATGCCGATGGTGTCAGCAATGCATGGAG
CACGCTGGTTGCGTTCGAGATACGCACGCGTATACCGCGGTTCTTCAAGG
GAATCAGAGCAGATGATTCCAGCTCTCGAGCGAACGCGGAAGGTTATTCT
TCGTTTCTTGCGCGCTCCTTCCCGCAAGACGTGGTCACCCTCAACAAATA
CGCAATCGCGTATCGATTTTGCGATGATATTCCGCTGCCGGTAAGGAATG
GTACATTTTGGGAAGAAGAATATGAATTCGCGAGCTCAGAGGTGCGAGTG
ACGGCGACGGTGGAAGAGTGGGCGATCGTGCTGGCAGTTTGTTGGGTGAT
GGTGGTGACGGTGGCGCATTTGCTGGTGTCGTTGGTGGCGGCTCGGAAGA
ACATGCCCGACAAGGTGCTCGGGGAACAAGATATTCTTCTTCGGTGGGCG
GCAGAGAACGAAGGGAAGCAGATGGAAGGAAGGGGGACAGTGGCGCTCTT
GTCTGTTGAGGGAGGAGCAAAGGGCGGGCGCATCACTGCAACTCTGAAGC
GTGCATGA

Coding sequence (CDS) from alignment at tig00000225_pilon:42257..43714+

>Ggra10790.t1 ID=Ggra10790.t1|Name=Ggra10790.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00000225_pilon:42257..43714+ (Gracilaria gracilis GNS1m male)
ATGGCAATTCGGACCAACATAAGCGTGAGCGTCTTCAACATTATCCGTTA
CCTCATTCTGGGTACTGGGCTTGACTTCATCGTGCGAAGGAGTCTTGACA
GTTTTGAACACTTCCGTCGTCGCCTCAGCCTTTATCGCGGACATTCGGTC
TCTGTAGCAGGCCATCGCATAGACCGGTATAATACGCTCAAAGTACTGAC
AACTGGCCATCTACTGTCAGGCTCGGTGCTGCTGTTGGTCAGTGCTCTGG
CCTACACCGCAGAGCTTGCGCTGGAGTACGCGGTGGACTCGAGCGCCATT
CGTTATGCCATTCCAGGTAACGTGACACGCGTGGAACAAAGGGAAGGTGT
CTGCTCGCGAGAGGAGATGATCGCAAGTGGAAACGCTCTGGACATTGCAT
TCATCGCCGATCAATGTGTCAAATTGGAAGACAACACTTACAGCTTCTAC
CGCCCAGTGTGGGTGAAATCAACAAGTTCGAAGGATAGAGTGAACGACGA
TGGACTGCGAGTGCTCTGTGAAGCCGTCGAGGGCAACATAATGTACGAAG
GAGATGGTATCTATGGCCCTTCTACCACCGGCAAGCGATCTCCAGAAGTG
CTCGAGCTGATCCAGATGCTCAGTGAGAACTCATATAAAACAGTTGGAGA
TAAGTTTCTGCCGCTGTTCGTGATAAAAGTAAGTTCCAGCGATATATTGC
AAACACTTTGGTTCGCTACGCCTTCAGAACAGTTTTCCCTCTCGGTTTTC
TATGCGAATATCACCGGAAGCTCTGTGCAGTGCATGGGCAGCATCATAGC
TGGCGTTGAACGCCAAGACACGTCGGTGGTGCAAGTGGTAGCATGTATGG
ATGGTTTCGATGAGGACAGTTCGCTCGTTCTTACCTCTGGTTCGAGTTTC
ATTGAGGTTGAGTCCGACGACGATGCCGATGGTGTCAGCAATGCATGGAG
CACGCTGGTTGCGTTCGAGATACGCACGCGTATACCGCGGTTCTTCAAGG
GAATCAGAGCAGATGATTCCAGCTCTCGAGCGAACGCGGAAGGTTATTCT
TCGTTTCTTGCGCGCTCCTTCCCGCAAGACGTGGTCACCCTCAACAAATA
CGCAATCGCGTATCGATTTTGCGATGATATTCCGCTGCCGGTAAGGAATG
GTACATTTTGGGAAGAAGAATATGAATTCGCGAGCTCAGAGGTGCGAGTG
ACGGCGACGGTGGAAGAGTGGGCGATCGTGCTGGCAGTTTGTTGGGTGAT
GGTGGTGACGGTGGCGCATTTGCTGGTGTCGTTGGTGGCGGCTCGGAAGA
ACATGCCCGACAAGGTGCTCGGGGAACAAGATATTCTTCTTCGGTGGGCG
GCAGAGAACGAAGGGAAGCAGATGGAAGGAAGGGGGACAGTGGCGCTCTT
GTCTGTTGAGGGAGGAGCAAAGGGCGGGCGCATCACTGCAACTCTGAAGC
GTGCATGA