Ggra11012.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11012.t1
Unique NameGgra11012.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:43044..43802 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11012Ggra11012Gracilaria gracilis GNS1m malegenetig00000224_pilon 43044..43802 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11012.t1.stop1Ggra11012.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 43044..43046 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11012.t1.CDS1Ggra11012.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 43044..43802 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11012.t1.exon1Ggra11012.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 43044..43802 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11012.t1.start1Ggra11012.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 43800..43802 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11012.t1Ggra11012.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 43044..43802 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11012.t1 ID=Ggra11012.t1|Name=Ggra11012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=253bp
MSSKSLLPALCLIAFLFTSLKFTAAQQPPSDPSQLLIEFKRSIGTSNSYI
LTCGFIPSPQATLQVFGRLQLQIPDGFDDTIGRANSVEQCVKDISPRLAD
LCATDLTEFQTMGQSMFEDCSKQSLTEEQQQQTEPFQFRTDNCRAIFTQF
LRPRVAGVWACECVQNDTYFVVAGRGAFSTSSVQELQTIDECTTEVQEQL
DRACQQLNGDFDLLALQSLQVCCRRALVNTGRKSVCSLLVPDDVSLFKAP
FQ*
back to top

spliced messenger RNA

>Ggra11012.t1 ID=Ggra11012.t1|Name=Ggra11012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000224_pilon:43044..43802- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGTCTAAATCCCTTCTCCCCGCTCTTTGCCTCATTGCGTTCCTGTT
TACCTCTCTCAAGTTCACCGCCGCACAGCAACCACCATCAGATCCCTCAC
AACTTCTAATCGAGTTCAAACGATCAATCGGCACATCAAATTCTTACATA
TTGACCTGTGGTTTCATTCCTTCCCCTCAAGCTACTCTTCAAGTTTTCGG
TCGTTTACAGCTTCAAATCCCCGATGGTTTTGACGACACAATTGGACGGG
CCAACTCCGTCGAACAATGTGTGAAGGACATTTCTCCTCGTTTGGCAGAT
CTGTGTGCCACCGACCTCACCGAATTTCAAACCATGGGGCAATCAATGTT
TGAGGACTGCTCAAAACAATCCCTCACCGAGGAGCAGCAACAACAGACGG
AGCCTTTTCAATTTCGCACCGACAATTGCCGCGCCATTTTCACACAGTTC
TTGAGGCCTCGTGTGGCGGGCGTGTGGGCATGTGAATGTGTACAGAACGA
CACTTATTTCGTTGTTGCCGGACGTGGAGCGTTCTCAACTTCCTCTGTAC
AGGAATTACAGACAATTGATGAATGTACGACGGAGGTCCAGGAACAGTTG
GACAGAGCTTGTCAACAGCTGAACGGTGACTTTGATCTTTTGGCTTTACA
ATCGCTTCAGGTTTGTTGTCGACGAGCTCTGGTGAATACTGGACGAAAAT
CTGTGTGTTCTCTTCTTGTCCCCGATGACGTTTCCTTGTTCAAGGCCCCT
TTTCAGTAA
back to top

protein sequence of Ggra11012.t1

>Ggra11012.t1 ID=Ggra11012.t1|Name=Ggra11012.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=253bp
MSSKSLLPALCLIAFLFTSLKFTAAQQPPSDPSQLLIEFKRSIGTSNSYI
LTCGFIPSPQATLQVFGRLQLQIPDGFDDTIGRANSVEQCVKDISPRLAD
LCATDLTEFQTMGQSMFEDCSKQSLTEEQQQQTEPFQFRTDNCRAIFTQF
LRPRVAGVWACECVQNDTYFVVAGRGAFSTSSVQELQTIDECTTEVQEQL
DRACQQLNGDFDLLALQSLQVCCRRALVNTGRKSVCSLLVPDDVSLFKAP
FQ*
back to top

mRNA from alignment at tig00000224_pilon:43044..43802-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11012.t1 ID=Ggra11012.t1|Name=Ggra11012.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000224_pilon:43044..43802- (Gracilaria gracilis GNS1m male)
ATGTCGTCTAAATCCCTTCTCCCCGCTCTTTGCCTCATTGCGTTCCTGTT
TACCTCTCTCAAGTTCACCGCCGCACAGCAACCACCATCAGATCCCTCAC
AACTTCTAATCGAGTTCAAACGATCAATCGGCACATCAAATTCTTACATA
TTGACCTGTGGTTTCATTCCTTCCCCTCAAGCTACTCTTCAAGTTTTCGG
TCGTTTACAGCTTCAAATCCCCGATGGTTTTGACGACACAATTGGACGGG
CCAACTCCGTCGAACAATGTGTGAAGGACATTTCTCCTCGTTTGGCAGAT
CTGTGTGCCACCGACCTCACCGAATTTCAAACCATGGGGCAATCAATGTT
TGAGGACTGCTCAAAACAATCCCTCACCGAGGAGCAGCAACAACAGACGG
AGCCTTTTCAATTTCGCACCGACAATTGCCGCGCCATTTTCACACAGTTC
TTGAGGCCTCGTGTGGCGGGCGTGTGGGCATGTGAATGTGTACAGAACGA
CACTTATTTCGTTGTTGCCGGACGTGGAGCGTTCTCAACTTCCTCTGTAC
AGGAATTACAGACAATTGATGAATGTACGACGGAGGTCCAGGAACAGTTG
GACAGAGCTTGTCAACAGCTGAACGGTGACTTTGATCTTTTGGCTTTACA
ATCGCTTCAGGTTTGTTGTCGACGAGCTCTGGTGAATACTGGACGAAAAT
CTGTGTGTTCTCTTCTTGTCCCCGATGACGTTTCCTTGTTCAAGGCCCCT
TTTCAGTAA
back to top

Coding sequence (CDS) from alignment at tig00000224_pilon:43044..43802-

>Ggra11012.t1 ID=Ggra11012.t1|Name=Ggra11012.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000224_pilon:43044..43802- (Gracilaria gracilis GNS1m male)
ATGTCGTCTAAATCCCTTCTCCCCGCTCTTTGCCTCATTGCGTTCCTGTT
TACCTCTCTCAAGTTCACCGCCGCACAGCAACCACCATCAGATCCCTCAC
AACTTCTAATCGAGTTCAAACGATCAATCGGCACATCAAATTCTTACATA
TTGACCTGTGGTTTCATTCCTTCCCCTCAAGCTACTCTTCAAGTTTTCGG
TCGTTTACAGCTTCAAATCCCCGATGGTTTTGACGACACAATTGGACGGG
CCAACTCCGTCGAACAATGTGTGAAGGACATTTCTCCTCGTTTGGCAGAT
CTGTGTGCCACCGACCTCACCGAATTTCAAACCATGGGGCAATCAATGTT
TGAGGACTGCTCAAAACAATCCCTCACCGAGGAGCAGCAACAACAGACGG
AGCCTTTTCAATTTCGCACCGACAATTGCCGCGCCATTTTCACACAGTTC
TTGAGGCCTCGTGTGGCGGGCGTGTGGGCATGTGAATGTGTACAGAACGA
CACTTATTTCGTTGTTGCCGGACGTGGAGCGTTCTCAACTTCCTCTGTAC
AGGAATTACAGACAATTGATGAATGTACGACGGAGGTCCAGGAACAGTTG
GACAGAGCTTGTCAACAGCTGAACGGTGACTTTGATCTTTTGGCTTTACA
ATCGCTTCAGGTTTGTTGTCGACGAGCTCTGGTGAATACTGGACGAAAAT
CTGTGTGTTCTCTTCTTGTCCCCGATGACGTTTCCTTGTTCAAGGCCCCT
TTTCAGTAA
back to top