Ggra11016.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11016.t1
Unique NameGgra11016.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length279
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000224_piloncontigtig00000224_pilon:97585..98494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002505717.1
PFAMsPeptidase_M32
Max annot lvl33090|Viridiplantae
Evalue3.83e-102
EggNOG OGsCOG2317@1|root,2QQRM@2759|Eukaryota,37W65@33090|Viridiplantae
DescriptionCarboxypeptidase Taq (M32) metallopeptidase
COG categoryE
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11016Ggra11016Gracilaria gracilis GNS1m malegenetig00000224_pilon 97585..98494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11016.t1Ggra11016.t1Gracilaria gracilis GNS1m malepolypeptidetig00000224_pilon 97585..98494 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11016.t1.stop1Ggra11016.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000224_pilon 97585..97587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11016.t1.CDS1Ggra11016.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000224_pilon 97585..98186 -
Ggra11016.t1.CDS2Ggra11016.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000224_pilon 98260..98494 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11016.t1.exon1Ggra11016.t1.exon1Gracilaria gracilis GNS1m maleexontig00000224_pilon 97585..98186 -
Ggra11016.t1.exon2Ggra11016.t1.exon2Gracilaria gracilis GNS1m maleexontig00000224_pilon 98260..98494 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11016.t1.intron1Ggra11016.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000224_pilon 98187..98259 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11016.t1.start1Ggra11016.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000224_pilon 98492..98494 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11016.t1 ID=Ggra11016.t1|Name=Ggra11016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=279bp
MIDVFERGMTSERLAEIFGSIAEPLKVSLDKVLHMKANCSKKVHPALLGG
DLWDVKKQADLCKEISQALGFDLQKGRIDESVHPFTGCAGYHDVRITTRY
SKELPFEGIMGVIHETGHAMYEQGRNDKYDGLPVNEPLSMGVHESQSLFW
ERMIAQNINFWHAMLPRIHERLPHTKEVSAHDLFFAVNQVNRGFIRVDAD
ELTYPFHIILRFDLEKKLVEGRLDVKDLPQAWNKGMKKHLGVEVEDDKLG
CLQDIHWPSGAFGYFPSYTLGAMMAASQ*
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spliced messenger RNA

>Ggra11016.t1 ID=Ggra11016.t1|Name=Ggra11016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=837bp|location=Sequence derived from alignment at tig00000224_pilon:97585..98494- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCGATGTATTCGAGAGAGGCATGACCTCCGAGAGGCTCGCTGAGAT
CTTCGGTAGTATCGCCGAACCGCTAAAGGTCAGTCTGGACAAGGTGCTAC
ACATGAAGGCCAATTGCTCCAAGAAGGTACACCCTGCTCTACTCGGAGGC
GACCTTTGGGATGTGAAAAAGCAAGCCGATCTGTGCAAAGAGATCTCCCA
AGCGCTCGGCTTCGATCTCCAAAAGGGCAGAATAGATGAGTCGGTTCACC
CTTTCACGGGCTGCGCCGGATACCACGATGTGCGAATCACTACCCGTTAC
AGCAAGGAGCTGCCGTTCGAGGGCATCATGGGCGTCATTCACGAGACCGG
TCACGCCATGTACGAGCAGGGTCGCAACGACAAGTACGACGGACTTCCCG
TCAACGAGCCGTTGTCGATGGGTGTACACGAGTCTCAGAGCCTATTTTGG
GAGCGAATGATAGCGCAGAATATCAACTTTTGGCATGCAATGTTACCAAG
GATCCACGAGAGGCTGCCGCACACCAAAGAGGTTTCAGCACATGATCTTT
TCTTCGCCGTCAATCAAGTGAACAGGGGCTTCATACGTGTTGATGCGGAT
GAGCTAACGTATCCATTTCACATCATTTTGCGTTTTGACTTGGAGAAGAA
GCTCGTTGAGGGTAGATTAGACGTCAAAGACTTGCCACAGGCGTGGAACA
AGGGCATGAAGAAGCACTTGGGCGTGGAGGTGGAGGACGATAAGCTCGGC
TGTTTGCAGGATATTCATTGGCCGAGTGGTGCGTTCGGGTACTTTCCTTC
TTATACCCTCGGCGCCATGATGGCGGCGTCTCAGTGA
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protein sequence of Ggra11016.t1

>Ggra11016.t1 ID=Ggra11016.t1|Name=Ggra11016.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=279bp
MIDVFERGMTSERLAEIFGSIAEPLKVSLDKVLHMKANCSKKVHPALLGG
DLWDVKKQADLCKEISQALGFDLQKGRIDESVHPFTGCAGYHDVRITTRY
SKELPFEGIMGVIHETGHAMYEQGRNDKYDGLPVNEPLSMGVHESQSLFW
ERMIAQNINFWHAMLPRIHERLPHTKEVSAHDLFFAVNQVNRGFIRVDAD
ELTYPFHIILRFDLEKKLVEGRLDVKDLPQAWNKGMKKHLGVEVEDDKLG
CLQDIHWPSGAFGYFPSYTLGAMMAASQ*
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mRNA from alignment at tig00000224_pilon:97585..98494-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11016.t1 ID=Ggra11016.t1|Name=Ggra11016.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=910bp|location=Sequence derived from alignment at tig00000224_pilon:97585..98494- (Gracilaria gracilis GNS1m male)
ATGATCGATGTATTCGAGAGAGGCATGACCTCCGAGAGGCTCGCTGAGAT
CTTCGGTAGTATCGCCGAACCGCTAAAGGTCAGTCTGGACAAGGTGCTAC
ACATGAAGGCCAATTGCTCCAAGAAGGTACACCCTGCTCTACTCGGAGGC
GACCTTTGGGATGTGAAAAAGCAAGCCGATCTGTGCAAAGAGATCTCCCA
AGCGCTCGGCTTCGATCTCCAAAAGGGCAGAATAGGTGAGTTGCCACTTC
TTGCCAACCCAAATGCTTTACTTGCATCCCAGCGCTGACAATCTCTTTTC
TTTTGTAGATGAGTCGGTTCACCCTTTCACGGGCTGCGCCGGATACCACG
ATGTGCGAATCACTACCCGTTACAGCAAGGAGCTGCCGTTCGAGGGCATC
ATGGGCGTCATTCACGAGACCGGTCACGCCATGTACGAGCAGGGTCGCAA
CGACAAGTACGACGGACTTCCCGTCAACGAGCCGTTGTCGATGGGTGTAC
ACGAGTCTCAGAGCCTATTTTGGGAGCGAATGATAGCGCAGAATATCAAC
TTTTGGCATGCAATGTTACCAAGGATCCACGAGAGGCTGCCGCACACCAA
AGAGGTTTCAGCACATGATCTTTTCTTCGCCGTCAATCAAGTGAACAGGG
GCTTCATACGTGTTGATGCGGATGAGCTAACGTATCCATTTCACATCATT
TTGCGTTTTGACTTGGAGAAGAAGCTCGTTGAGGGTAGATTAGACGTCAA
AGACTTGCCACAGGCGTGGAACAAGGGCATGAAGAAGCACTTGGGCGTGG
AGGTGGAGGACGATAAGCTCGGCTGTTTGCAGGATATTCATTGGCCGAGT
GGTGCGTTCGGGTACTTTCCTTCTTATACCCTCGGCGCCATGATGGCGGC
GTCTCAGTGA
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Coding sequence (CDS) from alignment at tig00000224_pilon:97585..98494-

>Ggra11016.t1 ID=Ggra11016.t1|Name=Ggra11016.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=837bp|location=Sequence derived from alignment at tig00000224_pilon:97585..98494- (Gracilaria gracilis GNS1m male)
ATGATCGATGTATTCGAGAGAGGCATGACCTCCGAGAGGCTCGCTGAGAT
CTTCGGTAGTATCGCCGAACCGCTAAAGGTCAGTCTGGACAAGGTGCTAC
ACATGAAGGCCAATTGCTCCAAGAAGGTACACCCTGCTCTACTCGGAGGC
GACCTTTGGGATGTGAAAAAGCAAGCCGATCTGTGCAAAGAGATCTCCCA
AGCGCTCGGCTTCGATCTCCAAAAGGGCAGAATAGATGAGTCGGTTCACC
CTTTCACGGGCTGCGCCGGATACCACGATGTGCGAATCACTACCCGTTAC
AGCAAGGAGCTGCCGTTCGAGGGCATCATGGGCGTCATTCACGAGACCGG
TCACGCCATGTACGAGCAGGGTCGCAACGACAAGTACGACGGACTTCCCG
TCAACGAGCCGTTGTCGATGGGTGTACACGAGTCTCAGAGCCTATTTTGG
GAGCGAATGATAGCGCAGAATATCAACTTTTGGCATGCAATGTTACCAAG
GATCCACGAGAGGCTGCCGCACACCAAAGAGGTTTCAGCACATGATCTTT
TCTTCGCCGTCAATCAAGTGAACAGGGGCTTCATACGTGTTGATGCGGAT
GAGCTAACGTATCCATTTCACATCATTTTGCGTTTTGACTTGGAGAAGAA
GCTCGTTGAGGGTAGATTAGACGTCAAAGACTTGCCACAGGCGTGGAACA
AGGGCATGAAGAAGCACTTGGGCGTGGAGGTGGAGGACGATAAGCTCGGC
TGTTTGCAGGATATTCATTGGCCGAGTGGTGCGTTCGGGTACTTTCCTTC
TTATACCCTCGGCGCCATGATGGCGGCGTCTCAGTGA
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