Ggra10246.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10246.t1
Unique NameGgra10246.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length195
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:193315..193899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173026.Glo7428_1581
Preferred namecpcT
PFAMsCpeT
Max annot lvl1117|Cyanobacteria
KEGG koko:K05383
KEGG Pathwayko00196,ko01100,map00196,map01100
GOsGO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0017006,GO:0017007,GO:0017009,GO:0019538,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0071704,GO:1901564
Evalue5.25e-36
EggNOG OGs2CCNY@1|root,2Z877@2|Bacteria,1G0J1@1117|Cyanobacteria
DescriptionCovalently attaches a chromophore to Cys residue(s) of phycobiliproteins
COG categoryE
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10246Ggra10246Gracilaria gracilis GNS1m malegenetig00000016_pilon 193315..193899 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10246.t1.stop1Ggra10246.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 193315..193317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10246.t1.CDS1Ggra10246.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 193315..193899 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10246.t1.exon1Ggra10246.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 193315..193899 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10246.t1.start1Ggra10246.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 193897..193899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10246.t1Ggra10246.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 193315..193899 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10246.t1 ID=Ggra10246.t1|Name=Ggra10246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=195bp
MDNPQFWAHIHVCFRPLPFDFLGAYSLYCESAYDFNLGAPYKTSVVSIVN
DGQQHLELASYKLRAPQEFWMGAYEPQLLDSLTRDMLIPLADACNTRYEW
QSDNQLYRAMSRPGKGCRIRRGGKERETYLDSNILLSEDCYAAWDVGRDV
DTDERVWGTPAGPFVFEVASRLDHLVPDEDSVMAASGASQRRRQ*
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spliced messenger RNA

>Ggra10246.t1 ID=Ggra10246.t1|Name=Ggra10246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000016_pilon:193315..193899- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGACAACCCGCAGTTCTGGGCGCACATCCACGTGTGCTTCCGCCCGCT
GCCGTTCGACTTTCTGGGCGCGTACAGCCTGTACTGCGAGTCTGCGTACG
ACTTTAACCTGGGCGCGCCGTACAAGACGTCAGTGGTGAGCATTGTGAAC
GACGGGCAGCAGCACTTGGAGCTGGCATCGTATAAACTGCGCGCGCCGCA
GGAGTTTTGGATGGGCGCTTACGAGCCGCAGCTGCTGGATTCGCTCACGC
GCGATATGCTGATCCCGTTGGCGGATGCTTGTAACACGCGCTATGAGTGG
CAGTCGGACAATCAGCTGTATCGCGCCATGTCGCGGCCGGGAAAGGGGTG
TCGGATACGGCGCGGCGGCAAGGAGCGCGAGACTTATCTGGACTCCAACA
TCTTGCTCAGCGAGGATTGCTACGCTGCATGGGACGTTGGGCGCGATGTG
GACACGGACGAGAGGGTGTGGGGCACGCCGGCGGGGCCGTTTGTGTTTGA
AGTGGCTTCTAGACTGGACCATCTGGTGCCGGATGAAGACAGCGTGATGG
CGGCTTCAGGCGCATCTCAAAGGCGACGTCAATGA
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protein sequence of Ggra10246.t1

>Ggra10246.t1 ID=Ggra10246.t1|Name=Ggra10246.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=195bp
MDNPQFWAHIHVCFRPLPFDFLGAYSLYCESAYDFNLGAPYKTSVVSIVN
DGQQHLELASYKLRAPQEFWMGAYEPQLLDSLTRDMLIPLADACNTRYEW
QSDNQLYRAMSRPGKGCRIRRGGKERETYLDSNILLSEDCYAAWDVGRDV
DTDERVWGTPAGPFVFEVASRLDHLVPDEDSVMAASGASQRRRQ*
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mRNA from alignment at tig00000016_pilon:193315..193899-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10246.t1 ID=Ggra10246.t1|Name=Ggra10246.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=585bp|location=Sequence derived from alignment at tig00000016_pilon:193315..193899- (Gracilaria gracilis GNS1m male)
ATGGACAACCCGCAGTTCTGGGCGCACATCCACGTGTGCTTCCGCCCGCT
GCCGTTCGACTTTCTGGGCGCGTACAGCCTGTACTGCGAGTCTGCGTACG
ACTTTAACCTGGGCGCGCCGTACAAGACGTCAGTGGTGAGCATTGTGAAC
GACGGGCAGCAGCACTTGGAGCTGGCATCGTATAAACTGCGCGCGCCGCA
GGAGTTTTGGATGGGCGCTTACGAGCCGCAGCTGCTGGATTCGCTCACGC
GCGATATGCTGATCCCGTTGGCGGATGCTTGTAACACGCGCTATGAGTGG
CAGTCGGACAATCAGCTGTATCGCGCCATGTCGCGGCCGGGAAAGGGGTG
TCGGATACGGCGCGGCGGCAAGGAGCGCGAGACTTATCTGGACTCCAACA
TCTTGCTCAGCGAGGATTGCTACGCTGCATGGGACGTTGGGCGCGATGTG
GACACGGACGAGAGGGTGTGGGGCACGCCGGCGGGGCCGTTTGTGTTTGA
AGTGGCTTCTAGACTGGACCATCTGGTGCCGGATGAAGACAGCGTGATGG
CGGCTTCAGGCGCATCTCAAAGGCGACGTCAATGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:193315..193899-

>Ggra10246.t1 ID=Ggra10246.t1|Name=Ggra10246.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=585bp|location=Sequence derived from alignment at tig00000016_pilon:193315..193899- (Gracilaria gracilis GNS1m male)
ATGGACAACCCGCAGTTCTGGGCGCACATCCACGTGTGCTTCCGCCCGCT
GCCGTTCGACTTTCTGGGCGCGTACAGCCTGTACTGCGAGTCTGCGTACG
ACTTTAACCTGGGCGCGCCGTACAAGACGTCAGTGGTGAGCATTGTGAAC
GACGGGCAGCAGCACTTGGAGCTGGCATCGTATAAACTGCGCGCGCCGCA
GGAGTTTTGGATGGGCGCTTACGAGCCGCAGCTGCTGGATTCGCTCACGC
GCGATATGCTGATCCCGTTGGCGGATGCTTGTAACACGCGCTATGAGTGG
CAGTCGGACAATCAGCTGTATCGCGCCATGTCGCGGCCGGGAAAGGGGTG
TCGGATACGGCGCGGCGGCAAGGAGCGCGAGACTTATCTGGACTCCAACA
TCTTGCTCAGCGAGGATTGCTACGCTGCATGGGACGTTGGGCGCGATGTG
GACACGGACGAGAGGGTGTGGGGCACGCCGGCGGGGCCGTTTGTGTTTGA
AGTGGCTTCTAGACTGGACCATCTGGTGCCGGATGAAGACAGCGTGATGG
CGGCTTCAGGCGCATCTCAAAGGCGACGTCAATGA
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