Ggra10320.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10320.t1
Unique NameGgra10320.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length270
Homology
BLAST of Ggra10320.t1 vs. uniprot
Match: A0A2V3ITK9 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITK9_9FLOR)

HSP 1 Score: 317 bits (811), Expect = 7.290e-106
Identity = 164/244 (67.21%), Postives = 195/244 (79.92%), Query Frame = 0
Query:   26 VTLPFGVGELPLSLSPRTEARIADAKARIESIRTPLTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKDSFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKVDSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTDFGSAAIARQFLRNPNNQISAVAVGFSDTSGLENIVGSADRVFTVGQWSEVVDVTADLVVDVCGVDALEF 269
            V LPFG+GELP     R   R   A+ R+E I TPLT  P    SLA AFGEVA GGCDPNVCFALDGS +I+  +FQLQKDFVKLVAGVISLDEQS+FAALQYGLR+ +ISDLT+DA DFLLKVD A ++G RRTFVA GIFGC+ QLL TP+EANHIVLLGDG+D  + R + F + ++A++FL +P+N ISAVAVGFSDTS LE IVG+ +RVF V +W+EVVDVTA+LV DVCG+DA+EF
Sbjct:   24 VKLPFGLGELPTMAPERLRRRAEAARKRLERIDTPLTRSPSAMMSLARAFGEVAGGGCDPNVCFALDGSRTINSTNFQLQKDFVKLVAGVISLDEQSQFAALQYGLRSDVISDLTLDAEDFLLKVDGAKKVGYRRTFVAFGIFGCIQQLLKTPFEANHIVLLGDGDDDILVRHSGFNAESVAKRFLFSPHNAISAVAVGFSDTSHLERIVGNPNRVFEVDEWAEVVDVTAELVEDVCGLDAVEF 267          
BLAST of Ggra10320.t1 vs. uniprot
Match: A0A2V3ISA4 (VWFA domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISA4_9FLOR)

HSP 1 Score: 204 bits (519), Expect = 5.240e-62
Identity = 111/219 (50.68%), Postives = 137/219 (62.56%), Query Frame = 0
Query:   51 KARIESIRTPLTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKDSFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKVDSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTDFGSAAIARQFLRNPNNQISAVAVGFSDTSGLENIVGSADRVFTVGQWSEVVDVTADLVVDVCGVDALEF 269
            +ARIE++ +PLT        +  A   V   GC+PN+CFA+DGS SI  D FQLQ DFV L+ G++SLDEQS ++A+QYGLR   +S  T DA  FLLKV+   Q+ + RTF+A GI GC+ Q      +AN I+LLGDG  +  SR       +IA QFL  PNN I AV V F  T  LE I G  DRVF+V  W  VVDV ADLV  VCG DA+EF
Sbjct:   22 EARIEALNSPLTTGAANRAQIDRALEIVEETGCEPNLCFAIDGSSSITDDEFQLQLDFVALITGLVSLDEQSGYSAIQYGLRPKFMSRFTQDAAAFLLKVEGTRQLRSVRTFIAPGIGGCMRQFRRVRGQANKIILLGDGRSTFDSRDPPLDPPSIAAQFLAEPNNSICAVGVSFDTTELLEEITGDPDRVFSVADWMSVVDVLADLVEQVCGADAVEF 240          
BLAST of Ggra10320.t1 vs. uniprot
Match: A0A2V3IQR5 (Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQR5_9FLOR)

HSP 1 Score: 196 bits (498), Expect = 8.710e-59
Identity = 109/221 (49.32%), Postives = 137/221 (61.99%), Query Frame = 0
Query:   50 AKARIESIRTPLTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKDSFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKVDSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTDFGSAAIARQFLRNPNNQISAVAVGF-SDTSGLENIVGSADRVFTVGQWSEVVDVTADLVVDVCGVDALEF 269
            A  RI+ + TPLT        + LA        CDPN+CFA+DGS S+D   FQL+KDF  LVA V++ DEQ++FAA+QYGLR   IS LT DA+ FL  V     + A RTF+A G+ GC+ Q      E  HIVLLGDG  +  S+       +IA+ FL NPNN ISAV VGF +D + L NI G  + VF VGQW EV  V A+LV +VCG+DA+EF
Sbjct:   24 ADRRIDELDTPLTKGTANEAEVQLALQIAEKTRCDPNICFAVDGSGSMDVTEFQLEKDFTNLVAAVVAYDEQARFAAVQYGLRPKFISRLTEDADAFLEAVHYTESLNAPRTFIAPGLAGCIRQFYYLKGEPKHIVLLGDGRSNFDSKLPPLDPVSIAQAFLANPNNTISAVGVGFDADDTMLTNIAGGEENVFNVGQWLEVTTVLAELVGEVCGLDAVEF 244          
BLAST of Ggra10320.t1 vs. uniprot
Match: A0A2V3IPP3 (Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPP3_9FLOR)

HSP 1 Score: 158 bits (399), Expect = 6.260e-44
Identity = 93/210 (44.29%), Postives = 123/210 (58.57%), Query Frame = 0
Query:   61 LTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKDSFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKVDSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTDFGS----AAIARQFLRNPNNQISAVAVGFSDTSGLENIVGSADRVFTVGQWSEVVDVTADLVVDVCGVDA 266
            LT   +  K +  A   V    C+ N+CFA+DGS  +    F++Q DF+ LVAG++SLD  S++AA+QYG R+S+IS LT D   FLL V   VQ  + RTFVARGI  C  QL      A  IV+LGDG     SRF  +G      ++++ FL +P++ I AV V F DTS LE I G A +VF V  W  V+D    LVV VCG ++
Sbjct:   35 LTKSEENMKFVKAAMDVVRKKKCNLNICFAVDGSGYMHGKDFKMQLDFINLVAGIVSLDPTSRYAAVQYGRRSSVISRLTRDTKSFLLNVKGTVQQCSSRTFVARGISRCARQLRRAKRGAKKIVVLGDGR----SRFQTYGPPRDPVSVSQAFLSDPSHGICAVGVNFRDTSMLEQITGDASKVFMVSDWESVLDALDALVVQVCGAES 240          
The following BLAST results are available for this feature:
BLAST of Ggra10320.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3ITK97.290e-10667.21VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3ISA45.240e-6250.68VWFA domain-containing protein n=1 Tax=Gracilariop... [more]
A0A2V3IQR58.710e-5949.32Collagen alpha-5(VI) chain n=1 Tax=Gracilariopsis ... [more]
A0A2V3IPP36.260e-4444.29Collagen alpha-6(VI) chain n=1 Tax=Gracilariopsis ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002035von Willebrand factor, type ASMARTSM00327VWA_4coord: 84..262
e-value: 3.9E-5
score: 33.1
IPR002035von Willebrand factor, type APFAMPF00092VWAcoord: 86..254
e-value: 2.9E-12
score: 47.2
IPR002035von Willebrand factor, type APROSITEPS50234VWFAcoord: 86..257
score: 10.922064
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 86..267
e-value: 4.9E-18
score: 67.7
IPR036465von Willebrand factor A-like domain superfamilySUPERFAMILY53300vWA-likecoord: 83..258
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..269
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availableCDDcd00198vWFAcoord: 86..244
e-value: 1.85924E-9
score: 53.3386

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:901486..902295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10320.t1Ggra10320.t1Gracilaria gracilis GNS1m malemRNAtig00000016_pilon 901486..902295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10320.t1 ID=Ggra10320.t1|Name=Ggra10320.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=270bp
MKSLLLLSVLSLAVLVSAQITRPVPVTLPFGVGELPLSLSPRTEARIADA
KARIESIRTPLTARPKGAKSLALAFGEVAAGGCDPNVCFALDGSISIDKD
SFQLQKDFVKLVAGVISLDEQSKFAALQYGLRTSIISDLTVDANDFLLKV
DSAVQIGARRTFVARGIFGCLLQLLNTPWEANHIVLLGDGEDSDVSRFTD
FGSAAIARQFLRNPNNQISAVAVGFSDTSGLENIVGSADRVFTVGQWSEV
VDVTADLVVDVCGVDALEF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002035VWF_A
IPR036465vWFA_dom_sf