Ggra10013.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10013.t1
Unique NameGgra10013.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length357
Homology
BLAST of Ggra10013.t1 vs. uniprot
Match: A0A2V3IRS3 (RNA polymerase II transcription factor B subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRS3_9FLOR)

HSP 1 Score: 535 bits (1379), Expect = 2.010e-189
Identity = 261/356 (73.31%), Postives = 304/356 (85.39%), Query Frame = 0
Query:    1 MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPLRRPPRP 356
            MRD  D FR+KAADD QD+LVLILD+SIRSW++  G++   +++D++ ALQ VTEQLLVFLNTFLLLHE+NRVCVI SGSD SRLVYP FP+PET+ P YD+ +ED S DA  GY+S HH  +D  Q+V+D+K AVE GI  SLR QE P  C+++SC+SSALATALCLLNRARRIQ+ERAAM LG+D+D ++  EQ +HFNGRIL+V+AGPDAPDQYVS+MNCIFSAQRLGVPIDSC+L  EKDSTYFQQAARLTNGVY+RPE FSTS PD L+QYLQTVFIVDKQSRDFLAMP PDKVDFRASCM+T EIIDNG+TCSICLSTF  SVGKGAAMCPVC+ARFAI NP +R  +P
Sbjct:    1 MRDNADHFRIKAADDPQDILVLILDSSIRSWVKTLGREPASSLNDAVSALQLVTEQLLVFLNTFLLLHESNRVCVIVSGSDASRLVYPVFPDPETLPPGYDQVVEDASLDAAVGYSSQHHLISDHYQMVQDLKAAVERGIKVSLRNQEHPQTCNRHSCISSALATALCLLNRARRIQIERAAMGLGRDKDVIDTFEQEMHFNGRILTVLAGPDAPDQYVSMMNCIFSAQRLGVPIDSCMLAKEKDSTYFQQAARLTNGVYVRPEGFSTSNPDTLMQYLQTVFIVDKQSRDFLAMPTPDKVDFRASCMQTREIIDNGYTCSICLSTFDISVGKGAAMCPVCSARFAITNPRKRSSKP 356          
BLAST of Ggra10013.t1 vs. uniprot
Match: R7Q6W0 (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6W0_CHOCR)

HSP 1 Score: 337 bits (865), Expect = 1.500e-111
Identity = 189/357 (52.94%), Postives = 245/357 (68.63%), Query Frame = 0
Query:    1 MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPL-RRPPRP 356
            MR P   FRV+AADD   LLV+ILD +  +W  ++G D+  A       LQSV EQLLVFLN+F+LLHE+NR+CVI +  D ++LV+P   EP +   D D   ED + DA    +     A      +RD   AV  G+  + R QE   + S  + +S+ALATALCL NRA+ I+  R+++SLGQ   +      +   NGRIL ++A  DAP+QYV VMNCIFSAQR+GVP+DSC+   +KDSTY QQAA LTNGV +RP EFST  P+ LIQ LQTVF+ D+ +RDFLAMP P KVDFRASCM+T +II++G+TCS+CLSTF+ +V KGAAMCP+C+ARFAI + + RRPPRP
Sbjct:    1 MRAPRGDFRVRAADDPPSLLVVILDVAALAWTDIAG-DKATA------TLQSVIEQLLVFLNSFMLLHESNRICVILASPDGAQLVFPELSEPGSRCSDIDLVAEDNALDAATAGSGFTLHAEQTPLKLRD---AVLAGVKEAFRAQEG-EVASAPAPISTALATALCLHNRAKSIKSTRSSLSLGQGNGQAN--NDSGTCNGRILMLIASEDAPEQYVPVMNCIFSAQRMGVPLDSCIH-GDKDSTYLQQAAYLTNGVCLRPNEFSTENPNVLIQILQTVFLTDRLNRDFLAMPTPRKVDFRASCMKTRQIIEDGYTCSVCLSTFATTVAKGAAMCPICSARFAITSRVKRRPPRP 343          
BLAST of Ggra10013.t1 vs. uniprot
Match: I0Z6M2 (General transcription and DNA repair factor IIH subunit TFB4 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z6M2_COCSC)

HSP 1 Score: 173 bits (438), Expect = 6.740e-48
Identity = 117/334 (35.03%), Postives = 176/334 (52.69%), Query Frame = 0
Query:   14 DDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIV 347
            DD   LLV++L+T    W  L+ + +   + +   +L ++ +Q+LVFLNTFL L+EAN + VI +  D+S ++Y         +P      +     A+ G AS        +++++ +   ++E  A  +     P +      ++ AL+ ALCL+N+A+         S G  R R +          R+L +   PDA +QY+SVMN IF+AQR  V ID+C +L   DS + QQAA LTNG+Y+RP+       DAL+QYL T+F  D  SR FL +P P  VDFRA+C      ID G+ CS+CLS F  S+ +    C  C   F +V
Sbjct:    7 DDDSCLLVVVLETHEDLWSALADESESPVIGNL--SLTTLLQQVLVFLNTFLALNEANELVVIAACGDQSEVLY--------TSPSVHRERQGPKHGAVTGNAS--------EEVLKKLHALLQEQAALPVGDHARPAV------LAGALSRALCLINKAQ-------LASAGGSRTRKQ---------PRLLCLKGSPDATEQYISVMNAIFAAQRCEVVIDAC-MLGASDSAFLQQAAHLTNGIYLRPKH-----KDALLQYLLTIFCGDAFSRSFLQLPRPIGVDFRAACFCHRRAIDLGYVCSVCLSIFCESITE----CSTCGTTFKVV 290          
BLAST of Ggra10013.t1 vs. uniprot
Match: A0A7S3ECV5 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECV5_9RHOD)

HSP 1 Score: 166 bits (419), Expect = 5.480e-45
Identity = 107/316 (33.86%), Postives = 163/316 (51.58%), Query Frame = 0
Query:   14 DDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAAD--PQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFS 327
            DD   LL+L++D    +W  +  K + K   DS+    +  E +L+F+++ LL +E NRV VI  G D  +++YP+           D+  E+   +     AS  H       + +V++ K   ++ ++  + K  DP +      +SS ++ ALC++NR  +   E  A   G       +         RIL  VA  D+P  YV +MNC FSAQRLGV ID+ +L ++ DST+ QQA  +  G+YMRPE     +P A++ YL   F+     R  L +P   +VDFRA C  T  +I  G+TCS+CLSTFS
Sbjct:    3 DDPPSLLILVVDLDPLAWAVID-KSRGKQTGDSVT---TYLESVLIFVDSHLLFNERNRVVVIARGIDSCKVLYPS-----------DDPSEEFLVNVDDKPASKPHAVGQLFREHVVKEAKYFFKDNVSKLMEK--DPVVGPSSLVISSCISLALCIINRVLKRYSETVAEGDGTKGSGPSVRAGAPET--RILCTVAAKDSPSDYVQLMNCAFSAQRLGVVIDAFIL-SDVDSTFLQQATHIAGGLYMRPEPSVVEQPSAMVNYLIYSFLPANSMRSVLRLPARREVDFRACCFATRRVISQGYTCSVCLSTFS 298          
BLAST of Ggra10013.t1 vs. uniprot
Match: A0A7S2ZQ04 (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZQ04_9RHOD)

HSP 1 Score: 167 bits (423), Expect = 1.200e-44
Identity = 110/333 (33.03%), Postives = 167/333 (50.15%), Query Frame = 0
Query:   14 DDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAAD--PQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARF 344
            DD   LL+L++D    +W  +  K + K   DS+    +  E +L+F+++ LL +E NRV VI  G D  +++YP+           D+  E+   +     AS  H       + +V++ K   ++ ++  + K  DP +      +SS ++ ALC++NR  +   E  A   G       +         RIL  VA  D+P  YV +MNC FSAQRLGV ID+ +L ++ DST+ QQA  +  G+YMRPE     +P A++ YL   F+     R  L +P   +VDFRA C  T  +I  G+TCS+CLSTFS        +C  C   F
Sbjct:    3 DDPPSLLILVVDLDPLAWAVID-KSRGKQTGDSVT---TYLESVLIFVDSHLLFNERNRVVVIARGIDSCKVLYPS-----------DDPSEEFLVNVDDKPASKPHAVGQLFREHVVKEAKYFFKDNVSKLMEK--DPVVGPSSLVISSCISLALCIINRVLKRYSETVAEGDGTKGSGPSVRAGAPET--RILCTVAAKDSPSDYVQLMNCAFSAQRLGVVIDAFIL-SDVDSTFLQQATHIAGGLYMRPEPSVVEQPSAMVNYLIYSFLPANSMRSVLRLPARREVDFRACCFATRRVISQGYTCSVCLSTFSDP----REVCDTCGTEF 311          
BLAST of Ggra10013.t1 vs. uniprot
Match: F4PMD8 (General transcription factor IIH subunit 3 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PMD8_CAVFA)

HSP 1 Score: 164 bits (415), Expect = 1.650e-44
Identity = 108/336 (32.14%), Postives = 163/336 (48.51%), Query Frame = 0
Query:   14 DDAQDLLVLILDTSIRSW---LQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAI 346
            DD   LLV+I+D +  SW   ++L+ ++           L +  E L++F+N +LLL++ N++ VI S    S  +YP+           D+SI      +L   + H         ++ ++    EE               S  S  S+A++ ALC +NR ++                      N     RIL     PD   QY+ VMNCIFSAQ+  +P+DSC+L +  DST+ QQA+ LTNG+Y+RP      + D L QYL + F++D  SR FL +P    VD+RASC    +I+D GF CS+CLS +     K ++ C  C  +F I
Sbjct:    7 DDDTSLLVIIVDLNAYSWGKQVELAEQNIDSTSGSRFITLSTFFEHLVIFINAYLLLNQENQIAVISSNVGESSFIYPS-----NHVDTKDKSISFKISQSLNNISKH---------LIEEIHLTSEEN--------------SSSSSFSAAMSLALCYINRIKK---------------------DNSTIRSRILVFNISPDVSTQYIPVMNCIFSAQKQSIPVDSCILTST-DSTFLQQASHLTNGIYLRPH-----RQDHLGQYLLSSFLIDSYSRKFLNVPTLKTVDYRASCFCHKKIVDIGFVCSVCLSIYC----KYSSSCTTCGTKFTI 283          
BLAST of Ggra10013.t1 vs. uniprot
Match: A0A6A7G3F2 (General transcription factor IIH subunit 3 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A6A7G3F2_9CRUS)

HSP 1 Score: 160 bits (406), Expect = 4.980e-43
Identity = 113/340 (33.24%), Postives = 172/340 (50.59%), Query Frame = 0
Query:   14 DDAQDLLVLILDTSIRSWLQL---------SGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARF 344
            +D   LLVL++DT+ R WL+          S  D +   H       SV +Q+ VFLN+FLLL+  N + VI S    SR ++P   E  + A  + ES  D SF ++ G            +I+ +++  +   +       E+ + C + S  + +L+ ALC +NR                     ++ +N + + RILS+ A  D   +Y+SVMNCIFSAQ+  VP+D CVL+ + DS + QQAA LTNG+Y +P  F     + L+Q   T+F+ D  SR  L +P  +++DFRA+C    ++ID GF C +CLS F   + K    C  C  R 
Sbjct:   15 EDDPSLLVLLIDTNPRFWLKQTQLRQRSNHSSSDLQSDSHSENSVFISVMDQIFVFLNSFLLLNRGNHLAVIASHPRESRYLFPVEREGYS-ALSHKES--DFSFASMNG------------RIMSELELLLNSSV-------EEKSEC-RNSRFAGSLSLALCHINR---------------------MIFENPNIHPRILSLCASEDLSSEYISVMNCIFSAQKQNVPLDVCVLI-DTDSLFMQQAAHLTNGIYWKPIRF-----EHLLQDFLTIFLPDLYSRKHLILPKSEQIDFRATCFCHRKVIDVGFVCPVCLSIFCDELTK----CRTCGTRM 300          
BLAST of Ggra10013.t1 vs. uniprot
Match: F0Z6W2 (General transcription factor IIH subunit 3 (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z6W2_DICPU)

HSP 1 Score: 159 bits (403), Expect = 5.440e-43
Identity = 109/334 (32.63%), Postives = 170/334 (50.90%), Query Frame = 0
Query:   14 DDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEP-ETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAI 346
            +D   LLV++LD +I SW   S      + ++ I       E ++VF+N +L+L++ N++ +I S   +S  ++P   E  E      + +I++++  +               QI+   KR  +  I  +  +Q+  N     S  S+AL+ ALC +NR R+                     ++ +   RIL     PD   QY+SVMNCIFSAQ+  +P+DSC+L ++ DST+ QQA+ LTNG+Y++P      K + L QYL T F++D QSR  LA P    VD+RASC    +I+D GF CS+CLS F          C  C  +F++
Sbjct:    2 EDDTSLLVIVLDCNIYSWGTSSPPLINTSKNNYI-GFSKFLEHVMVFINAYLMLNQENQIALISSKIGQSSFIFPETVEQLEQEETQTENNIQNITLQS---------------QIL---KRLQKINIEVNNDQQDIIN-----SSFSAALSMALCYINRIRK---------------------ESPNLKPRILVFNISPDVSSQYISVMNCIFSAQKQSIPVDSCIL-SQTDSTFLQQASHLTNGIYLKPH-----KQELLSQYLLTTFLLDTQSRKSLAYPNLKSVDYRASCFCHKKIVDIGFVCSVCLSIFCNHFSS----CSTCGTKFSL 280          
BLAST of Ggra10013.t1 vs. uniprot
Match: A0A5J4Z7J9 (RNA polymerase II transcription factor B subunit 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z7J9_PORPP)

HSP 1 Score: 163 bits (412), Expect = 7.750e-43
Identity = 123/399 (30.83%), Postives = 191/399 (47.87%), Query Frame = 0
Query:   15 DAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQS-------VTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPA--------FPEPETVAPD-YDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPN----------------ICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIV-------------------EQNVH---FNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLL--NEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPLRR--PPR 355
            D   ++V++LD S+ SW++   ++      D++ A Q+       V  QL++F+N  L +H  N V ++   + R++   PA        F + +  +P    E + + S +A K      H    P++ V  + R V++G+  +L +  D                    SK   MS+AL+ ALCL+NRA      RA      + + +E V                    + +H    N R+L V    D   QYV  MNC+FSAQR+ VP+D CVL   + +DS +FQQA+ LT+G+Y+R   F+ +    L+Q L   F+ D  +R  L MP   +VDFRA+C  T E I+ G+TCS+CLS+F        A CP C  +F +    RR  PP+
Sbjct:   21 DRPSMVVVVLDLSLHSWMRFVEQEADAPDADAVSAAQACALLIEQVLAQLVIFMNAVLAMHAENHVALVACNTRRAKTFLPASVAAAHEMFADDKMRSPGAVAELMIEGSTNADKLMELEDHA---PRREVSSLMRQVQDGVTLALLEMLDTEREGAGLSGADASGGGRTTSKDPKMSAALSLALCLINRAVSTANTRARAVALLNTENVEHVGRLPGLLGGENGPGSVDVQAKGLHSNAVNARVLIVSPSDDMASQYVPFMNCMFSAQRMSVPVDCCVLRVKDAEDSKFFQQASYLTSGIYLRVLRFARNNTGCLLQCLMGYFLADGDARQSLRMPRQREVDFRATCFATRETINLGWTCSVCLSSFRDH----CAACPTCGVKFKLSVAARRAMPPK 412          
BLAST of Ggra10013.t1 vs. uniprot
Match: A0A168PWK1 (General transcription and DNA repair factor IIH subunit TFB4 n=2 Tax=Absidia TaxID=4828 RepID=A0A168PWK1_ABSGL)

HSP 1 Score: 159 bits (401), Expect = 2.580e-42
Identity = 112/340 (32.94%), Postives = 168/340 (49.41%), Query Frame = 0
Query:   10 VKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQALQSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDYDESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDPNICSKYSCMSS----ALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVHFNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQQAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKVDFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFA 345
            +  ++D  +LLVLI+DT+   W Q++      ++ D+++       Q+L+F+N  L L   N+V VI S    S+ +YP  P  E   PD              G  S+  R A+     + V   + EG+   L    D +I  K +  SS    A + ALC +NR  ++        LG             H   RIL +   PD P QY+ +MNCIFSAQ++G+P+D C + +E+ + + QQAA +T GVY+     +     AL+QYL   F+ ++ +R+FL +P  D VDFRA+C     IID GF CS+CLS F         +C  C  +FA
Sbjct:    4 IATSEDDSNLLVLIIDTNPFVWDQIAKAATPLSLDDALR-------QILIFVNAHLALKYNNKVVVIASHGGHSKFLYP-LPHQEGQLPD--------------GSTSYSKRNANMYPHFQLVTDQIVEGLQDLL---SDTDILKKENFTSSMTTGAFSMALCYINRIIKMD------DLG-------------HIKPRILIISVSPDPPKQYIPLMNCIFSAQKMGIPVDVCRVYDEQ-TAFLQQAANITGGVYI-----NVDNSQALLQYLMFAFLPERYARNFLNLPSQDLVDFRAACFCHKNIIDVGFVCSVCLSIFC----TWTPVCSTCKTKFA 289          
The following BLAST results are available for this feature:
BLAST of Ggra10013.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRS32.010e-18973.31RNA polymerase II transcription factor B subunit 4... [more]
R7Q6W01.500e-11152.94Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
I0Z6M26.740e-4835.03General transcription and DNA repair factor IIH su... [more]
A0A7S3ECV55.480e-4533.86Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
A0A7S2ZQ041.200e-4433.03Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
F4PMD81.650e-4432.14General transcription factor IIH subunit 3 n=1 Tax... [more]
A0A6A7G3F24.980e-4333.24General transcription factor IIH subunit 3 (Fragme... [more]
F0Z6W25.440e-4332.63General transcription factor IIH subunit 3 (Fragme... [more]
A0A5J4Z7J97.750e-4330.83RNA polymerase II transcription factor B subunit 4... [more]
A0A168PWK12.580e-4232.94General transcription and DNA repair factor IIH su... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 13..284
e-value: 7.0E-55
score: 188.1
IPR004600TFIIH subunit Tfb4/GTF2H3PFAMPF03850Tfb4coord: 18..341
e-value: 1.3E-66
score: 225.0
IPR004600TFIIH subunit Tfb4/GTF2H3PANTHERPTHR12831TRANSCRIPTION INITIATION FACTOR IIH TFIIH , POLYPEPTIDE 3-RELATEDcoord: 11..348

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:58227..59297 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10013.t1Ggra10013.t1Gracilaria gracilis GNS1m malemRNAtig00000222_pilon 58227..59297 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQAL
QSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDY
DESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDP
NICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVH
FNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQ
QAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKV
DFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPL
RRPPRP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036465vWFA_dom_sf
IPR004600TFIIH_Tfb4/GTF2H3