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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Seed ortholog | 248742.XP_005650835.1 |
| PFAMs | Tfb4 |
| Max annot lvl | 3041|Chlorophyta |
| KEGG ko | ko:K03143 |
| KEGG Pathway | ko03022,ko03420,ko05203,map03022,map03420,map05203 |
| KEGG Module | M00290 |
| Evalue | 1.26e-47 |
| EggNOG OGs | COG5242@1|root,KOG2487@2759|Eukaryota,37KH5@33090|Viridiplantae,34KNC@3041|Chlorophyta |
| Description | Transcription factor Tfb4 |
| COG category | KL |
| BRITE | ko00000,ko00001,ko00002,ko03021,ko03400 |
Relationships
This mRNA is a part of the following gene feature(s):
The following start_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10013.t1.start1 | Ggra10013.t1.start1 | Gracilaria gracilis GNS1m male | start_codon | tig00000222_pilon 58227..58229 + |
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| Ggra10013.t1.stop1 | Ggra10013.t1.stop1 | Gracilaria gracilis GNS1m male | stop_codon | tig00000222_pilon 59295..59297 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp
MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQAL
QSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDY
DESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDP
NICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVH
FNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQ
QAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKV
DFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPL
RRPPRP* back to topspliced messenger RNA >Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000222_pilon:58227..59297+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.
ATGCGCGATCCCACAGATCCCTTCAGAGTCAAAGCTGCAGACGATGCCCA
AGACCTTCTAGTGCTTATCCTCGATACATCTATTCGCTCTTGGCTTCAAC
TATCTGGAAAGGATCAGAAAAAAGCTATGCATGATTCCATACAAGCTCTC
CAATCAGTCACAGAACAACTACTTGTATTCTTGAATACCTTTTTATTGCT
ACATGAAGCAAATCGAGTGTGCGTGATATTCTCCGGTTCAGATCGGTCAA
GACTTGTATACCCTGCCTTTCCGGAGCCAGAAACTGTCGCGCCTGATTAT
GATGAATCCATTGAAGACGTATCGTTTGATGCCCTAAAGGGATATGCCTC
TCACCATCACAGAGCCGCAGATCCGCAGCAGATCGTGCGCGATGTCAAGA
GGGCCGTTGAAGAGGGTATTGCGGCATCTCTACGAAAGCAGGAAGATCCC
AACATCTGCAGCAAGTATTCATGCATGAGCTCTGCACTGGCAACAGCGCT
CTGCCTCTTAAATAGAGCTCGTCGGATTCAAGTTGAGCGTGCTGCAATGA
GCCTCGGCCAGGATAGAGACCGACTGGAAATAGTCGAGCAGAATGTTCAC
TTCAATGGTCGGATACTAAGCGTGGTCGCAGGTCCTGATGCTCCAGATCA
ATATGTATCAGTCATGAATTGCATTTTCTCTGCTCAGAGGCTGGGAGTGC
CTATTGATTCTTGCGTACTTCTGAATGAGAAAGATTCTACTTATTTTCAG
CAAGCTGCTCGTCTTACGAACGGAGTATACATGCGACCGGAAGAATTCTC
TACGTCTAAACCAGACGCACTAATTCAGTACCTACAAACTGTGTTTATTG
TGGACAAGCAAAGCCGGGACTTCCTCGCAATGCCAATTCCGGACAAAGTG
GATTTCAGGGCGTCTTGTATGGAAACTAGTGAAATAATCGACAACGGCTT
TACATGCTCCATATGCTTGTCGACTTTCAGCCCTTCCGTGGGAAAGGGAG
CAGCCATGTGCCCTGTATGCAATGCGAGATTTGCCATCGTTAATCCTCTG
AGGCGACCACCAAGACCGTAG back to topprotein sequence of Ggra10013.t1 >Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=357bp
MRDPTDPFRVKAADDAQDLLVLILDTSIRSWLQLSGKDQKKAMHDSIQAL
QSVTEQLLVFLNTFLLLHEANRVCVIFSGSDRSRLVYPAFPEPETVAPDY
DESIEDVSFDALKGYASHHHRAADPQQIVRDVKRAVEEGIAASLRKQEDP
NICSKYSCMSSALATALCLLNRARRIQVERAAMSLGQDRDRLEIVEQNVH
FNGRILSVVAGPDAPDQYVSVMNCIFSAQRLGVPIDSCVLLNEKDSTYFQ
QAARLTNGVYMRPEEFSTSKPDALIQYLQTVFIVDKQSRDFLAMPIPDKV
DFRASCMETSEIIDNGFTCSICLSTFSPSVGKGAAMCPVCNARFAIVNPL
RRPPRP* back to topmRNA from alignment at tig00000222_pilon:58227..59297+ Legend: start_codonpolypeptideCDSexonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1071bp|location=Sequence derived from alignment at tig00000222_pilon:58227..59297+ (Gracilaria gracilis GNS1m male)
ATGCGCGATCCCACAGATCCCTTCAGAGTCAAAGCTGCAGACGATGCCCA
AGACCTTCTAGTGCTTATCCTCGATACATCTATTCGCTCTTGGCTTCAAC
TATCTGGAAAGGATCAGAAAAAAGCTATGCATGATTCCATACAAGCTCTC
CAATCAGTCACAGAACAACTACTTGTATTCTTGAATACCTTTTTATTGCT
ACATGAAGCAAATCGAGTGTGCGTGATATTCTCCGGTTCAGATCGGTCAA
GACTTGTATACCCTGCCTTTCCGGAGCCAGAAACTGTCGCGCCTGATTAT
GATGAATCCATTGAAGACGTATCGTTTGATGCCCTAAAGGGATATGCCTC
TCACCATCACAGAGCCGCAGATCCGCAGCAGATCGTGCGCGATGTCAAGA
GGGCCGTTGAAGAGGGTATTGCGGCATCTCTACGAAAGCAGGAAGATCCC
AACATCTGCAGCAAGTATTCATGCATGAGCTCTGCACTGGCAACAGCGCT
CTGCCTCTTAAATAGAGCTCGTCGGATTCAAGTTGAGCGTGCTGCAATGA
GCCTCGGCCAGGATAGAGACCGACTGGAAATAGTCGAGCAGAATGTTCAC
TTCAATGGTCGGATACTAAGCGTGGTCGCAGGTCCTGATGCTCCAGATCA
ATATGTATCAGTCATGAATTGCATTTTCTCTGCTCAGAGGCTGGGAGTGC
CTATTGATTCTTGCGTACTTCTGAATGAGAAAGATTCTACTTATTTTCAG
CAAGCTGCTCGTCTTACGAACGGAGTATACATGCGACCGGAAGAATTCTC
TACGTCTAAACCAGACGCACTAATTCAGTACCTACAAACTGTGTTTATTG
TGGACAAGCAAAGCCGGGACTTCCTCGCAATGCCAATTCCGGACAAAGTG
GATTTCAGGGCGTCTTGTATGGAAACTAGTGAAATAATCGACAACGGCTT
TACATGCTCCATATGCTTGTCGACTTTCAGCCCTTCCGTGGGAAAGGGAG
CAGCCATGTGCCCTGTATGCAATGCGAGATTTGCCATCGTTAATCCTCTG
AGGCGACCACCAAGACCGTAG back to topCoding sequence (CDS) from alignment at tig00000222_pilon:58227..59297+ >Ggra10013.t1 ID=Ggra10013.t1|Name=Ggra10013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1071bp|location=Sequence derived from alignment at tig00000222_pilon:58227..59297+ (Gracilaria gracilis GNS1m male)
ATGCGCGATCCCACAGATCCCTTCAGAGTCAAAGCTGCAGACGATGCCCA
AGACCTTCTAGTGCTTATCCTCGATACATCTATTCGCTCTTGGCTTCAAC
TATCTGGAAAGGATCAGAAAAAAGCTATGCATGATTCCATACAAGCTCTC
CAATCAGTCACAGAACAACTACTTGTATTCTTGAATACCTTTTTATTGCT
ACATGAAGCAAATCGAGTGTGCGTGATATTCTCCGGTTCAGATCGGTCAA
GACTTGTATACCCTGCCTTTCCGGAGCCAGAAACTGTCGCGCCTGATTAT
GATGAATCCATTGAAGACGTATCGTTTGATGCCCTAAAGGGATATGCCTC
TCACCATCACAGAGCCGCAGATCCGCAGCAGATCGTGCGCGATGTCAAGA
GGGCCGTTGAAGAGGGTATTGCGGCATCTCTACGAAAGCAGGAAGATCCC
AACATCTGCAGCAAGTATTCATGCATGAGCTCTGCACTGGCAACAGCGCT
CTGCCTCTTAAATAGAGCTCGTCGGATTCAAGTTGAGCGTGCTGCAATGA
GCCTCGGCCAGGATAGAGACCGACTGGAAATAGTCGAGCAGAATGTTCAC
TTCAATGGTCGGATACTAAGCGTGGTCGCAGGTCCTGATGCTCCAGATCA
ATATGTATCAGTCATGAATTGCATTTTCTCTGCTCAGAGGCTGGGAGTGC
CTATTGATTCTTGCGTACTTCTGAATGAGAAAGATTCTACTTATTTTCAG
CAAGCTGCTCGTCTTACGAACGGAGTATACATGCGACCGGAAGAATTCTC
TACGTCTAAACCAGACGCACTAATTCAGTACCTACAAACTGTGTTTATTG
TGGACAAGCAAAGCCGGGACTTCCTCGCAATGCCAATTCCGGACAAAGTG
GATTTCAGGGCGTCTTGTATGGAAACTAGTGAAATAATCGACAACGGCTT
TACATGCTCCATATGCTTGTCGACTTTCAGCCCTTCCGTGGGAAAGGGAG
CAGCCATGTGCCCTGTATGCAATGCGAGATTTGCCATCGTTAATCCTCTG
AGGCGACCACCAAGACCGTAG back to top
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