Ggra10034.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10034.t1
Unique NameGgra10034.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Homology
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BLAST of Ggra10034.t1 vs. uniprot
Match: A0A2V3IKC0 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKC0_9FLOR)

HSP 1 Score: 102 bits (253), Expect = 8.230e-24
Identity = 90/192 (46.88%), Postives = 112/192 (58.33%), Query Frame = 0 
Query:    1 MPGASRGRQGAPVVYSAEAHREFVTGFRQRKLQRQQIGQKRAAEQXXXXXXXXXXXXXDVFRENREMIQADSEDEEE-NENSTLQSTRFQGSDGVVTAVVQPLDFGKPALLPKAPQKVVKSPNQDKDQQSSGSAKD---SSSLLTKSVPKLGVAKPKKKSWKRKTSYTHMFSKGNLRKAKLRRRREAHKNAS 188
            MP  SR +QG PVVYSAEAHR+FVTGFR+                XXXXXXXXXXXXX                     E S ++ST FQ +DG VTA+VQP+D  + A L K   +V   P +   ++   ++KD   S++  + S  KLGV KP KK  KRKTS+TH+ SKG+LRKAKLRRRREA   +S
Sbjct:    1 MPSISRKQQGPPVVYSAEAHRQFVTGFRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEQSQVKSTEFQCADGTVTAIVQPMDTAQSAYLLKK-NEVEDHPKEKGSEEKVATSKDEEKSTNEKSTSASKLGVVKPSKKIGKRKTSFTHLLSKGHLRKAKLRRRREARHKSS 191
The following BLAST results are available for this feature:
BLAST of Ggra10034.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IKC08.230e-2446.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 43..63
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..162
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 171..188
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 120..143
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..69
IPR019186Nucleolar protein 12PFAMPF09805Nop25coord: 12..81
e-value: 9.0E-10
score: 39.2
IPR019186Nucleolar protein 12PANTHERPTHR14577NUCLEOLAR PROTEIN 12coord: 8..186

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:110080..110646 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10034.t1Ggra10034.t1Gracilaria gracilis GNS1m malemRNAtig00000222_pilon 110080..110646 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10034.t1 ID=Ggra10034.t1|Name=Ggra10034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPGASRGRQGAPVVYSAEAHREFVTGFRQRKLQRQQIGQKRAAEQQKKER
REERKQRRDVFRENREMIQADSEDEEENENSTLQSTRFQGSDGVVTAVVQ
PLDFGKPALLPKAPQKVVKSPNQDKDQQSSGSAKDSSSLLTKSVPKLGVA
KPKKKSWKRKTSYTHMFSKGNLRKAKLRRRREAHKNAS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019186Nucleolar_protein_12