Ggra10034.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10034.t1
Unique NameGgra10034.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:110080..110646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10034Ggra10034Gracilaria gracilis GNS1m malegenetig00000222_pilon 110080..110646 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10034.t1.stop1Ggra10034.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 110080..110082 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10034.t1.CDS1Ggra10034.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 110080..110646 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10034.t1.exon1Ggra10034.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 110080..110646 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10034.t1.start1Ggra10034.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 110644..110646 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10034.t1Ggra10034.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 110080..110646 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10034.t1 ID=Ggra10034.t1|Name=Ggra10034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=189bp
MPGASRGRQGAPVVYSAEAHREFVTGFRQRKLQRQQIGQKRAAEQQKKER
REERKQRRDVFRENREMIQADSEDEEENENSTLQSTRFQGSDGVVTAVVQ
PLDFGKPALLPKAPQKVVKSPNQDKDQQSSGSAKDSSSLLTKSVPKLGVA
KPKKKSWKRKTSYTHMFSKGNLRKAKLRRRREAHKNAS*
back to top

spliced messenger RNA

>Ggra10034.t1 ID=Ggra10034.t1|Name=Ggra10034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000222_pilon:110080..110646- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGGGAGCATCTCGTGGCCGGCAGGGTGCGCCTGTGGTTTATTCGGC
TGAAGCACATCGCGAGTTTGTCACAGGCTTTCGACAGCGTAAATTGCAGC
GTCAACAAATAGGCCAAAAACGAGCTGCAGAACAGCAGAAGAAAGAACGC
CGTGAAGAGAGGAAACAGCGCCGCGATGTTTTTCGAGAGAACAGAGAAAT
GATTCAAGCCGACTCTGAAGACGAAGAAGAGAACGAAAACTCTACTCTTC
AATCCACTCGGTTTCAAGGCTCAGATGGCGTTGTTACTGCCGTGGTTCAA
CCTCTTGATTTTGGGAAACCTGCACTTCTTCCAAAAGCACCTCAAAAGGT
AGTGAAGTCTCCAAATCAAGATAAAGACCAGCAGTCATCGGGTTCAGCAA
AAGATTCGAGTTCTCTTTTAACGAAGTCCGTGCCAAAGCTCGGAGTGGCT
AAGCCGAAGAAAAAATCATGGAAGCGGAAGACCTCATATACTCACATGTT
CTCCAAAGGAAATTTGCGGAAGGCAAAGTTGAGACGTCGCAGAGAAGCTC
ATAAGAACGCCTCGTAG
back to top

protein sequence of Ggra10034.t1

>Ggra10034.t1 ID=Ggra10034.t1|Name=Ggra10034.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=189bp
MPGASRGRQGAPVVYSAEAHREFVTGFRQRKLQRQQIGQKRAAEQQKKER
REERKQRRDVFRENREMIQADSEDEEENENSTLQSTRFQGSDGVVTAVVQ
PLDFGKPALLPKAPQKVVKSPNQDKDQQSSGSAKDSSSLLTKSVPKLGVA
KPKKKSWKRKTSYTHMFSKGNLRKAKLRRRREAHKNAS*
back to top

mRNA from alignment at tig00000222_pilon:110080..110646-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10034.t1 ID=Ggra10034.t1|Name=Ggra10034.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00000222_pilon:110080..110646- (Gracilaria gracilis GNS1m male)
ATGCCGGGAGCATCTCGTGGCCGGCAGGGTGCGCCTGTGGTTTATTCGGC
TGAAGCACATCGCGAGTTTGTCACAGGCTTTCGACAGCGTAAATTGCAGC
GTCAACAAATAGGCCAAAAACGAGCTGCAGAACAGCAGAAGAAAGAACGC
CGTGAAGAGAGGAAACAGCGCCGCGATGTTTTTCGAGAGAACAGAGAAAT
GATTCAAGCCGACTCTGAAGACGAAGAAGAGAACGAAAACTCTACTCTTC
AATCCACTCGGTTTCAAGGCTCAGATGGCGTTGTTACTGCCGTGGTTCAA
CCTCTTGATTTTGGGAAACCTGCACTTCTTCCAAAAGCACCTCAAAAGGT
AGTGAAGTCTCCAAATCAAGATAAAGACCAGCAGTCATCGGGTTCAGCAA
AAGATTCGAGTTCTCTTTTAACGAAGTCCGTGCCAAAGCTCGGAGTGGCT
AAGCCGAAGAAAAAATCATGGAAGCGGAAGACCTCATATACTCACATGTT
CTCCAAAGGAAATTTGCGGAAGGCAAAGTTGAGACGTCGCAGAGAAGCTC
ATAAGAACGCCTCGTAG
back to top

Coding sequence (CDS) from alignment at tig00000222_pilon:110080..110646-

>Ggra10034.t1 ID=Ggra10034.t1|Name=Ggra10034.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00000222_pilon:110080..110646- (Gracilaria gracilis GNS1m male)
ATGCCGGGAGCATCTCGTGGCCGGCAGGGTGCGCCTGTGGTTTATTCGGC
TGAAGCACATCGCGAGTTTGTCACAGGCTTTCGACAGCGTAAATTGCAGC
GTCAACAAATAGGCCAAAAACGAGCTGCAGAACAGCAGAAGAAAGAACGC
CGTGAAGAGAGGAAACAGCGCCGCGATGTTTTTCGAGAGAACAGAGAAAT
GATTCAAGCCGACTCTGAAGACGAAGAAGAGAACGAAAACTCTACTCTTC
AATCCACTCGGTTTCAAGGCTCAGATGGCGTTGTTACTGCCGTGGTTCAA
CCTCTTGATTTTGGGAAACCTGCACTTCTTCCAAAAGCACCTCAAAAGGT
AGTGAAGTCTCCAAATCAAGATAAAGACCAGCAGTCATCGGGTTCAGCAA
AAGATTCGAGTTCTCTTTTAACGAAGTCCGTGCCAAAGCTCGGAGTGGCT
AAGCCGAAGAAAAAATCATGGAAGCGGAAGACCTCATATACTCACATGTT
CTCCAAAGGAAATTTGCGGAAGGCAAAGTTGAGACGTCGCAGAGAAGCTC
ATAAGAACGCCTCGTAG
back to top