Ggra10014.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10014.t1
Unique NameGgra10014.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:59345..60901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog109760.SPPG_04958T0
Preferred nameNUG1
PFAMsGN3L_Grn1,MMR_HSR1
Max annot lvl4751|Fungi
KEGG koko:K14538
KEGG Pathwayko03008,map03008
GOsGO:0000054,GO:0000055,GO:0000166,GO:0000463,GO:0000470,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0015031,GO:0015833,GO:0015931,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0022613,GO:0030684,GO:0030687,GO:0031503,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033036,GO:0033750,GO:0034470,GO:0034613,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042886,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046483,GO:0046907,GO:0050657,GO:0050658,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0070013,GO:0070727,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0090304,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Evalue8.42e-134
EggNOG OGsCOG1161@1|root,KOG2484@2759|Eukaryota,38CBA@33154|Opisthokonta,3NYZI@4751|Fungi
Description(GTP)-binding protein
COG categoryJ
BRITEko00000,ko00001,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10014Ggra10014Gracilaria gracilis GNS1m malegenetig00000222_pilon 59345..60901 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10014.t1.stop1Ggra10014.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 59345..59347 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10014.t1.CDS1Ggra10014.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 59345..60901 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10014.t1.exon1Ggra10014.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 59345..60901 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10014.t1.start1Ggra10014.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 60899..60901 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10014.t1Ggra10014.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 59345..60901 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10014.t1 ID=Ggra10014.t1|Name=Ggra10014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=519bp
MAPHVKSKRQTLRHKYKVEKKVRQHLREVRRANKYKPEVRKIRKKDPGIP
NLWPFKQQMMETIERKKAQEAEAKKALLEARRKANKDIQAAGVDPALLDV
AADASKRAAEFESRQEDDNGEVETSSDLTHDNSRRAFMKEFKKVLESSDV
ILEVLDARDPIGCRCFEAEKAVLAASRGTKRIVLVLNKVDMVPKEIADKW
LSYLRNEFPTVPFRASVEQSRTKGQANMTALAASSVNTSECLGAANLLSL
LKNYSRSRNLKTSVTVGVIGYPNVGKSSLINSLKRSRAVSAGATPGLTRN
AQEVHLDKNIRLIDCPGIVFSTNQADALVLRNCIKIEQLHDPISPVETII
KRVGAEPLMVAYNIPQFDNVTEFLAYLCSSRGKFRRGGSYDVESAARIVL
QDWNSGKIPFYTLPPKGPSTAHLNASIVQQWSEEFNINAVKESEEAQLES
MALHPTVQFASASATTPLVDAEDRMTDEAEENRKRDPENANSEPTYHVAP
KGILKKRSRVNQDKMELK*
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spliced messenger RNA

>Ggra10014.t1 ID=Ggra10014.t1|Name=Ggra10014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000222_pilon:59345..60901- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCCGCACGTGAAGAGTAAGCGCCAAACACTGAGGCACAAGTACAA
AGTCGAAAAGAAGGTACGGCAACATCTTAGAGAGGTACGCCGTGCCAATA
AATACAAGCCTGAAGTGAGAAAAATCCGCAAGAAGGATCCTGGCATTCCG
AACCTGTGGCCATTCAAACAGCAGATGATGGAGACTATCGAGCGAAAAAA
AGCACAAGAAGCCGAAGCGAAGAAGGCATTACTAGAGGCGCGTCGAAAAG
CAAACAAAGATATACAAGCTGCTGGAGTGGACCCAGCTCTTCTGGATGTT
GCGGCTGATGCTAGTAAACGAGCCGCAGAATTCGAAAGTCGTCAGGAAGA
CGATAATGGCGAAGTCGAAACTTCATCCGATTTAACCCACGATAATTCGA
GACGCGCGTTCATGAAGGAATTCAAGAAGGTCCTGGAAAGCTCTGACGTT
ATCCTTGAAGTGTTAGACGCCAGAGACCCTATCGGCTGTCGCTGTTTCGA
AGCAGAGAAAGCCGTTCTGGCTGCTTCAAGAGGGACAAAAAGAATAGTTC
TCGTTCTGAACAAAGTAGATATGGTGCCGAAGGAGATAGCTGACAAGTGG
TTGTCTTACCTTCGCAATGAATTTCCCACGGTTCCTTTCCGGGCTTCTGT
GGAACAAAGTCGAACAAAAGGCCAAGCCAACATGACTGCTCTCGCAGCGT
CGTCCGTCAATACTTCAGAGTGCCTTGGAGCAGCCAACTTGCTCTCGCTT
CTAAAGAACTACTCAAGGAGCCGGAATTTGAAGACATCAGTTACCGTTGG
AGTCATTGGATACCCTAATGTTGGAAAGAGCTCATTGATCAATTCCTTGA
AGAGAAGTCGTGCTGTTTCAGCAGGGGCCACTCCGGGGCTCACCCGCAAC
GCACAGGAAGTTCACCTCGATAAGAACATTCGCCTAATCGACTGTCCGGG
AATCGTTTTCTCCACTAACCAGGCCGATGCACTCGTGCTACGAAACTGCA
TCAAAATTGAGCAGCTACATGATCCTATATCGCCAGTGGAGACCATTATC
AAGAGAGTTGGAGCAGAACCTTTGATGGTGGCGTATAACATCCCGCAATT
TGATAATGTGACGGAATTCTTGGCATACCTCTGTTCCTCGCGCGGTAAAT
TCAGACGTGGGGGATCTTACGATGTAGAATCAGCAGCGAGAATAGTTTTG
CAAGACTGGAACAGCGGCAAGATACCGTTCTATACGCTTCCTCCCAAGGG
CCCTAGCACTGCTCACCTCAACGCTTCCATCGTTCAACAGTGGAGCGAAG
AGTTCAATATTAACGCCGTTAAAGAATCGGAGGAGGCCCAGCTGGAATCC
ATGGCACTACATCCTACCGTACAGTTTGCAAGTGCTTCCGCAACTACACC
GCTGGTTGATGCGGAAGATAGAATGACCGACGAGGCTGAGGAAAACCGAA
AGAGAGACCCAGAGAACGCCAACTCTGAACCCACATACCATGTCGCTCCG
AAGGGAATTCTAAAGAAGAGATCTCGTGTTAACCAAGACAAGATGGAGCT
CAAGTAA
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protein sequence of Ggra10014.t1

>Ggra10014.t1 ID=Ggra10014.t1|Name=Ggra10014.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=519bp
MAPHVKSKRQTLRHKYKVEKKVRQHLREVRRANKYKPEVRKIRKKDPGIP
NLWPFKQQMMETIERKKAQEAEAKKALLEARRKANKDIQAAGVDPALLDV
AADASKRAAEFESRQEDDNGEVETSSDLTHDNSRRAFMKEFKKVLESSDV
ILEVLDARDPIGCRCFEAEKAVLAASRGTKRIVLVLNKVDMVPKEIADKW
LSYLRNEFPTVPFRASVEQSRTKGQANMTALAASSVNTSECLGAANLLSL
LKNYSRSRNLKTSVTVGVIGYPNVGKSSLINSLKRSRAVSAGATPGLTRN
AQEVHLDKNIRLIDCPGIVFSTNQADALVLRNCIKIEQLHDPISPVETII
KRVGAEPLMVAYNIPQFDNVTEFLAYLCSSRGKFRRGGSYDVESAARIVL
QDWNSGKIPFYTLPPKGPSTAHLNASIVQQWSEEFNINAVKESEEAQLES
MALHPTVQFASASATTPLVDAEDRMTDEAEENRKRDPENANSEPTYHVAP
KGILKKRSRVNQDKMELK*
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mRNA from alignment at tig00000222_pilon:59345..60901-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10014.t1 ID=Ggra10014.t1|Name=Ggra10014.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000222_pilon:59345..60901- (Gracilaria gracilis GNS1m male)
ATGGCCCCGCACGTGAAGAGTAAGCGCCAAACACTGAGGCACAAGTACAA
AGTCGAAAAGAAGGTACGGCAACATCTTAGAGAGGTACGCCGTGCCAATA
AATACAAGCCTGAAGTGAGAAAAATCCGCAAGAAGGATCCTGGCATTCCG
AACCTGTGGCCATTCAAACAGCAGATGATGGAGACTATCGAGCGAAAAAA
AGCACAAGAAGCCGAAGCGAAGAAGGCATTACTAGAGGCGCGTCGAAAAG
CAAACAAAGATATACAAGCTGCTGGAGTGGACCCAGCTCTTCTGGATGTT
GCGGCTGATGCTAGTAAACGAGCCGCAGAATTCGAAAGTCGTCAGGAAGA
CGATAATGGCGAAGTCGAAACTTCATCCGATTTAACCCACGATAATTCGA
GACGCGCGTTCATGAAGGAATTCAAGAAGGTCCTGGAAAGCTCTGACGTT
ATCCTTGAAGTGTTAGACGCCAGAGACCCTATCGGCTGTCGCTGTTTCGA
AGCAGAGAAAGCCGTTCTGGCTGCTTCAAGAGGGACAAAAAGAATAGTTC
TCGTTCTGAACAAAGTAGATATGGTGCCGAAGGAGATAGCTGACAAGTGG
TTGTCTTACCTTCGCAATGAATTTCCCACGGTTCCTTTCCGGGCTTCTGT
GGAACAAAGTCGAACAAAAGGCCAAGCCAACATGACTGCTCTCGCAGCGT
CGTCCGTCAATACTTCAGAGTGCCTTGGAGCAGCCAACTTGCTCTCGCTT
CTAAAGAACTACTCAAGGAGCCGGAATTTGAAGACATCAGTTACCGTTGG
AGTCATTGGATACCCTAATGTTGGAAAGAGCTCATTGATCAATTCCTTGA
AGAGAAGTCGTGCTGTTTCAGCAGGGGCCACTCCGGGGCTCACCCGCAAC
GCACAGGAAGTTCACCTCGATAAGAACATTCGCCTAATCGACTGTCCGGG
AATCGTTTTCTCCACTAACCAGGCCGATGCACTCGTGCTACGAAACTGCA
TCAAAATTGAGCAGCTACATGATCCTATATCGCCAGTGGAGACCATTATC
AAGAGAGTTGGAGCAGAACCTTTGATGGTGGCGTATAACATCCCGCAATT
TGATAATGTGACGGAATTCTTGGCATACCTCTGTTCCTCGCGCGGTAAAT
TCAGACGTGGGGGATCTTACGATGTAGAATCAGCAGCGAGAATAGTTTTG
CAAGACTGGAACAGCGGCAAGATACCGTTCTATACGCTTCCTCCCAAGGG
CCCTAGCACTGCTCACCTCAACGCTTCCATCGTTCAACAGTGGAGCGAAG
AGTTCAATATTAACGCCGTTAAAGAATCGGAGGAGGCCCAGCTGGAATCC
ATGGCACTACATCCTACCGTACAGTTTGCAAGTGCTTCCGCAACTACACC
GCTGGTTGATGCGGAAGATAGAATGACCGACGAGGCTGAGGAAAACCGAA
AGAGAGACCCAGAGAACGCCAACTCTGAACCCACATACCATGTCGCTCCG
AAGGGAATTCTAAAGAAGAGATCTCGTGTTAACCAAGACAAGATGGAGCT
CAAGTAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:59345..60901-

>Ggra10014.t1 ID=Ggra10014.t1|Name=Ggra10014.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000222_pilon:59345..60901- (Gracilaria gracilis GNS1m male)
ATGGCCCCGCACGTGAAGAGTAAGCGCCAAACACTGAGGCACAAGTACAA
AGTCGAAAAGAAGGTACGGCAACATCTTAGAGAGGTACGCCGTGCCAATA
AATACAAGCCTGAAGTGAGAAAAATCCGCAAGAAGGATCCTGGCATTCCG
AACCTGTGGCCATTCAAACAGCAGATGATGGAGACTATCGAGCGAAAAAA
AGCACAAGAAGCCGAAGCGAAGAAGGCATTACTAGAGGCGCGTCGAAAAG
CAAACAAAGATATACAAGCTGCTGGAGTGGACCCAGCTCTTCTGGATGTT
GCGGCTGATGCTAGTAAACGAGCCGCAGAATTCGAAAGTCGTCAGGAAGA
CGATAATGGCGAAGTCGAAACTTCATCCGATTTAACCCACGATAATTCGA
GACGCGCGTTCATGAAGGAATTCAAGAAGGTCCTGGAAAGCTCTGACGTT
ATCCTTGAAGTGTTAGACGCCAGAGACCCTATCGGCTGTCGCTGTTTCGA
AGCAGAGAAAGCCGTTCTGGCTGCTTCAAGAGGGACAAAAAGAATAGTTC
TCGTTCTGAACAAAGTAGATATGGTGCCGAAGGAGATAGCTGACAAGTGG
TTGTCTTACCTTCGCAATGAATTTCCCACGGTTCCTTTCCGGGCTTCTGT
GGAACAAAGTCGAACAAAAGGCCAAGCCAACATGACTGCTCTCGCAGCGT
CGTCCGTCAATACTTCAGAGTGCCTTGGAGCAGCCAACTTGCTCTCGCTT
CTAAAGAACTACTCAAGGAGCCGGAATTTGAAGACATCAGTTACCGTTGG
AGTCATTGGATACCCTAATGTTGGAAAGAGCTCATTGATCAATTCCTTGA
AGAGAAGTCGTGCTGTTTCAGCAGGGGCCACTCCGGGGCTCACCCGCAAC
GCACAGGAAGTTCACCTCGATAAGAACATTCGCCTAATCGACTGTCCGGG
AATCGTTTTCTCCACTAACCAGGCCGATGCACTCGTGCTACGAAACTGCA
TCAAAATTGAGCAGCTACATGATCCTATATCGCCAGTGGAGACCATTATC
AAGAGAGTTGGAGCAGAACCTTTGATGGTGGCGTATAACATCCCGCAATT
TGATAATGTGACGGAATTCTTGGCATACCTCTGTTCCTCGCGCGGTAAAT
TCAGACGTGGGGGATCTTACGATGTAGAATCAGCAGCGAGAATAGTTTTG
CAAGACTGGAACAGCGGCAAGATACCGTTCTATACGCTTCCTCCCAAGGG
CCCTAGCACTGCTCACCTCAACGCTTCCATCGTTCAACAGTGGAGCGAAG
AGTTCAATATTAACGCCGTTAAAGAATCGGAGGAGGCCCAGCTGGAATCC
ATGGCACTACATCCTACCGTACAGTTTGCAAGTGCTTCCGCAACTACACC
GCTGGTTGATGCGGAAGATAGAATGACCGACGAGGCTGAGGAAAACCGAA
AGAGAGACCCAGAGAACGCCAACTCTGAACCCACATACCATGTCGCTCCG
AAGGGAATTCTAAAGAAGAGATCTCGTGTTAACCAAGACAAGATGGAGCT
CAAGTAA
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