Ggra10021.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10021.t1
Unique NameGgra10021.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length257
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000222_piloncontigtig00000222_pilon:80269..81039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10021Ggra10021Gracilaria gracilis GNS1m malegenetig00000222_pilon 80269..81039 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10021.t1.stop1Ggra10021.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000222_pilon 80269..80271 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10021.t1.CDS1Ggra10021.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000222_pilon 80269..81039 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10021.t1.exon1Ggra10021.t1.exon1Gracilaria gracilis GNS1m maleexontig00000222_pilon 80269..81039 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10021.t1.start1Ggra10021.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000222_pilon 81037..81039 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10021.t1Ggra10021.t1Gracilaria gracilis GNS1m malepolypeptidetig00000222_pilon 80269..81039 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10021.t1 ID=Ggra10021.t1|Name=Ggra10021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=257bp
MVTDAPIAFLGSFPVRLGSTTRPSKCLRRARSKICMTALPDDTALDMISF
ALSGPGILATSAFLVSGTAILLSFADFGPKKTSTSAIYILQISLPSPKSV
ELPNGKVARLREGETVLQFNSFEECTTVTKKLEEPGVTYSVLRTSSTAVK
EVYKYPKPVNALGARWPQNLVEFRDESDPQARWAEYEQIDAKGDLDLEWS
SLMKKMAPIQFISKKDCRLCAGTGRVRCFRCGGVGGNSNFECDCVQGKRA
CEWCAQ*
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spliced messenger RNA

>Ggra10021.t1 ID=Ggra10021.t1|Name=Ggra10021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000222_pilon:80269..81039- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTAACAGATGCACCAATCGCGTTTCTCGGCTCATTTCCAGTGAGACT
CGGAAGTACGACAAGGCCTTCCAAGTGCCTGAGGCGAGCAAGGAGTAAAA
TTTGTATGACAGCTCTCCCGGACGACACTGCTCTTGACATGATTTCCTTT
GCTCTCTCTGGTCCCGGAATTCTTGCCACCTCTGCGTTTCTGGTCTCTGG
GACAGCCATCTTACTCTCCTTTGCGGATTTTGGCCCAAAGAAGACAAGTA
CATCAGCCATATACATCTTACAAATATCCTTACCTTCCCCGAAATCTGTA
GAACTTCCGAACGGCAAGGTAGCTCGCCTCCGAGAAGGAGAAACTGTTCT
TCAATTCAACTCCTTTGAGGAGTGTACAACTGTGACAAAGAAGCTGGAAG
AACCTGGTGTTACATACTCGGTGCTTCGAACAAGTTCCACTGCTGTCAAA
GAGGTTTACAAATATCCAAAGCCAGTGAATGCGCTTGGTGCTCGATGGCC
ACAGAACCTGGTGGAGTTCAGGGATGAATCCGACCCGCAGGCCAGATGGG
CTGAGTATGAACAGATAGATGCCAAGGGCGATCTAGACTTGGAGTGGAGT
TCGCTCATGAAAAAAATGGCACCAATTCAGTTTATAAGCAAAAAAGATTG
CCGCCTCTGTGCCGGAACTGGAAGGGTGAGATGCTTCCGATGCGGTGGTG
TTGGTGGCAATAGTAATTTCGAATGCGACTGCGTACAAGGGAAACGAGCT
TGCGAATGGTGTGCGCAATAA
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protein sequence of Ggra10021.t1

>Ggra10021.t1 ID=Ggra10021.t1|Name=Ggra10021.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=257bp
MVTDAPIAFLGSFPVRLGSTTRPSKCLRRARSKICMTALPDDTALDMISF
ALSGPGILATSAFLVSGTAILLSFADFGPKKTSTSAIYILQISLPSPKSV
ELPNGKVARLREGETVLQFNSFEECTTVTKKLEEPGVTYSVLRTSSTAVK
EVYKYPKPVNALGARWPQNLVEFRDESDPQARWAEYEQIDAKGDLDLEWS
SLMKKMAPIQFISKKDCRLCAGTGRVRCFRCGGVGGNSNFECDCVQGKRA
CEWCAQ*
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mRNA from alignment at tig00000222_pilon:80269..81039-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10021.t1 ID=Ggra10021.t1|Name=Ggra10021.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=771bp|location=Sequence derived from alignment at tig00000222_pilon:80269..81039- (Gracilaria gracilis GNS1m male)
ATGGTAACAGATGCACCAATCGCGTTTCTCGGCTCATTTCCAGTGAGACT
CGGAAGTACGACAAGGCCTTCCAAGTGCCTGAGGCGAGCAAGGAGTAAAA
TTTGTATGACAGCTCTCCCGGACGACACTGCTCTTGACATGATTTCCTTT
GCTCTCTCTGGTCCCGGAATTCTTGCCACCTCTGCGTTTCTGGTCTCTGG
GACAGCCATCTTACTCTCCTTTGCGGATTTTGGCCCAAAGAAGACAAGTA
CATCAGCCATATACATCTTACAAATATCCTTACCTTCCCCGAAATCTGTA
GAACTTCCGAACGGCAAGGTAGCTCGCCTCCGAGAAGGAGAAACTGTTCT
TCAATTCAACTCCTTTGAGGAGTGTACAACTGTGACAAAGAAGCTGGAAG
AACCTGGTGTTACATACTCGGTGCTTCGAACAAGTTCCACTGCTGTCAAA
GAGGTTTACAAATATCCAAAGCCAGTGAATGCGCTTGGTGCTCGATGGCC
ACAGAACCTGGTGGAGTTCAGGGATGAATCCGACCCGCAGGCCAGATGGG
CTGAGTATGAACAGATAGATGCCAAGGGCGATCTAGACTTGGAGTGGAGT
TCGCTCATGAAAAAAATGGCACCAATTCAGTTTATAAGCAAAAAAGATTG
CCGCCTCTGTGCCGGAACTGGAAGGGTGAGATGCTTCCGATGCGGTGGTG
TTGGTGGCAATAGTAATTTCGAATGCGACTGCGTACAAGGGAAACGAGCT
TGCGAATGGTGTGCGCAATAA
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Coding sequence (CDS) from alignment at tig00000222_pilon:80269..81039-

>Ggra10021.t1 ID=Ggra10021.t1|Name=Ggra10021.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=771bp|location=Sequence derived from alignment at tig00000222_pilon:80269..81039- (Gracilaria gracilis GNS1m male)
ATGGTAACAGATGCACCAATCGCGTTTCTCGGCTCATTTCCAGTGAGACT
CGGAAGTACGACAAGGCCTTCCAAGTGCCTGAGGCGAGCAAGGAGTAAAA
TTTGTATGACAGCTCTCCCGGACGACACTGCTCTTGACATGATTTCCTTT
GCTCTCTCTGGTCCCGGAATTCTTGCCACCTCTGCGTTTCTGGTCTCTGG
GACAGCCATCTTACTCTCCTTTGCGGATTTTGGCCCAAAGAAGACAAGTA
CATCAGCCATATACATCTTACAAATATCCTTACCTTCCCCGAAATCTGTA
GAACTTCCGAACGGCAAGGTAGCTCGCCTCCGAGAAGGAGAAACTGTTCT
TCAATTCAACTCCTTTGAGGAGTGTACAACTGTGACAAAGAAGCTGGAAG
AACCTGGTGTTACATACTCGGTGCTTCGAACAAGTTCCACTGCTGTCAAA
GAGGTTTACAAATATCCAAAGCCAGTGAATGCGCTTGGTGCTCGATGGCC
ACAGAACCTGGTGGAGTTCAGGGATGAATCCGACCCGCAGGCCAGATGGG
CTGAGTATGAACAGATAGATGCCAAGGGCGATCTAGACTTGGAGTGGAGT
TCGCTCATGAAAAAAATGGCACCAATTCAGTTTATAAGCAAAAAAGATTG
CCGCCTCTGTGCCGGAACTGGAAGGGTGAGATGCTTCCGATGCGGTGGTG
TTGGTGGCAATAGTAATTTCGAATGCGACTGCGTACAAGGGAAACGAGCT
TGCGAATGGTGTGCGCAATAA
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