Ggra9988.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9988.t1
Unique NameGgra9988.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length366
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:116894..117991 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708575.1
PFAMsPseudoU_synth_2
Max annot lvl2759|Eukaryota
GOsGO:0001522,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009982,GO:0009987,GO:0010467,GO:0016070,GO:0016853,GO:0016866,GO:0031119,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue3.27e-40
EggNOG OGsCOG0564@1|root,KOG1919@2759|Eukaryota
Descriptionpseudouridine synthase activity
COG categoryJ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9988Ggra9988Gracilaria gracilis GNS1m malegenetig00000213_pilon 116894..117991 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9988.t1.start1Ggra9988.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 116894..116896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9988.t1.CDS1Ggra9988.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 116894..117991 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9988.t1.exon1Ggra9988.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 116894..117991 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9988.t1.stop1Ggra9988.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 117989..117991 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9988.t1Ggra9988.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 116894..117991 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9988.t1 ID=Ggra9988.t1|Name=Ggra9988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=366bp
MTIFATRVCPYLSVRALARRAFSSKPFPSSPDVSSPRSLELPCATQPARF
KVAEDLSGTRLDRFIKSNAPGLPPGLIHRHIRQSRVKVNGAVERNRATTV
RANDVISFPGDVKLGLTRRKKRPPANDVSLSEAMLIKQWLLYRDARVAVL
NKPPGLPVLDSPHQESSRTLEQLLCGLGTGRYWLVHRLHTMAGGAIMVAR
DVGAVTLLSDYFRARMVTRVYWGLVAGVPRSKKGIIDIDIGGKKAVTRYR
VVQMVDNHYSWLELEPRTGRANQISIHCADGLGTPLVGDVSYDNSQEAQH
PVDRGALQLCSRSITFPRLTQIHSPKRQKRKGKAPNLVTVQAPLPPHMKD
TWRRLGMQERFAADS*
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spliced messenger RNA

>Ggra9988.t1 ID=Ggra9988.t1|Name=Ggra9988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000213_pilon:116894..117991+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGATATTTGCTACTCGTGTTTGTCCATACCTTTCAGTCAGGGCTCT
AGCTCGGCGCGCCTTCAGTTCGAAACCATTTCCATCTTCGCCAGATGTTT
CTTCTCCACGATCGTTGGAGCTTCCATGTGCTACCCAACCAGCGCGTTTC
AAGGTAGCGGAGGATCTCTCCGGCACACGACTCGATCGTTTTATCAAGAG
CAATGCGCCGGGTCTTCCGCCTGGTCTTATACACCGTCATATCCGTCAAT
CTCGCGTAAAAGTCAACGGGGCGGTCGAACGCAACCGTGCTACTACTGTT
CGTGCAAATGATGTGATTAGCTTCCCTGGTGACGTGAAACTCGGATTGAC
TCGACGGAAGAAGCGCCCACCTGCTAACGATGTCTCGCTTTCGGAAGCAA
TGCTTATCAAGCAATGGTTGCTTTACAGGGATGCCAGAGTTGCGGTGCTG
AACAAACCACCGGGCCTGCCAGTTCTCGATAGTCCTCACCAGGAATCATC
CCGGACTCTTGAACAGCTTCTTTGTGGACTGGGTACAGGTCGATATTGGT
TGGTACATCGCTTGCACACGATGGCTGGTGGTGCCATTATGGTGGCGAGG
GATGTTGGTGCCGTAACACTGCTTTCGGACTACTTCAGAGCGCGGATGGT
GACGCGAGTGTATTGGGGACTGGTCGCCGGCGTCCCTCGGAGCAAGAAGG
GAATTATAGACATTGATATTGGAGGCAAGAAGGCTGTAACGAGATACCGC
GTTGTTCAAATGGTGGATAACCATTATTCCTGGCTTGAGCTAGAACCTCG
AACAGGTCGTGCGAATCAGATTTCAATACACTGCGCGGACGGGCTTGGTA
CTCCGCTTGTGGGTGATGTCAGCTACGATAATTCACAAGAGGCTCAGCAT
CCTGTCGACCGTGGAGCACTCCAACTGTGCAGTAGAAGCATAACATTCCC
TCGCCTCACACAAATCCACTCTCCGAAGCGCCAAAAACGCAAAGGAAAAG
CGCCAAACCTTGTAACAGTTCAAGCTCCACTCCCCCCTCACATGAAGGAC
ACATGGCGGAGACTCGGAATGCAGGAACGTTTTGCAGCCGATTCCTAG
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protein sequence of Ggra9988.t1

>Ggra9988.t1 ID=Ggra9988.t1|Name=Ggra9988.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=366bp
MTIFATRVCPYLSVRALARRAFSSKPFPSSPDVSSPRSLELPCATQPARF
KVAEDLSGTRLDRFIKSNAPGLPPGLIHRHIRQSRVKVNGAVERNRATTV
RANDVISFPGDVKLGLTRRKKRPPANDVSLSEAMLIKQWLLYRDARVAVL
NKPPGLPVLDSPHQESSRTLEQLLCGLGTGRYWLVHRLHTMAGGAIMVAR
DVGAVTLLSDYFRARMVTRVYWGLVAGVPRSKKGIIDIDIGGKKAVTRYR
VVQMVDNHYSWLELEPRTGRANQISIHCADGLGTPLVGDVSYDNSQEAQH
PVDRGALQLCSRSITFPRLTQIHSPKRQKRKGKAPNLVTVQAPLPPHMKD
TWRRLGMQERFAADS*
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mRNA from alignment at tig00000213_pilon:116894..117991+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9988.t1 ID=Ggra9988.t1|Name=Ggra9988.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1098bp|location=Sequence derived from alignment at tig00000213_pilon:116894..117991+ (Gracilaria gracilis GNS1m male)
ATGACGATATTTGCTACTCGTGTTTGTCCATACCTTTCAGTCAGGGCTCT
AGCTCGGCGCGCCTTCAGTTCGAAACCATTTCCATCTTCGCCAGATGTTT
CTTCTCCACGATCGTTGGAGCTTCCATGTGCTACCCAACCAGCGCGTTTC
AAGGTAGCGGAGGATCTCTCCGGCACACGACTCGATCGTTTTATCAAGAG
CAATGCGCCGGGTCTTCCGCCTGGTCTTATACACCGTCATATCCGTCAAT
CTCGCGTAAAAGTCAACGGGGCGGTCGAACGCAACCGTGCTACTACTGTT
CGTGCAAATGATGTGATTAGCTTCCCTGGTGACGTGAAACTCGGATTGAC
TCGACGGAAGAAGCGCCCACCTGCTAACGATGTCTCGCTTTCGGAAGCAA
TGCTTATCAAGCAATGGTTGCTTTACAGGGATGCCAGAGTTGCGGTGCTG
AACAAACCACCGGGCCTGCCAGTTCTCGATAGTCCTCACCAGGAATCATC
CCGGACTCTTGAACAGCTTCTTTGTGGACTGGGTACAGGTCGATATTGGT
TGGTACATCGCTTGCACACGATGGCTGGTGGTGCCATTATGGTGGCGAGG
GATGTTGGTGCCGTAACACTGCTTTCGGACTACTTCAGAGCGCGGATGGT
GACGCGAGTGTATTGGGGACTGGTCGCCGGCGTCCCTCGGAGCAAGAAGG
GAATTATAGACATTGATATTGGAGGCAAGAAGGCTGTAACGAGATACCGC
GTTGTTCAAATGGTGGATAACCATTATTCCTGGCTTGAGCTAGAACCTCG
AACAGGTCGTGCGAATCAGATTTCAATACACTGCGCGGACGGGCTTGGTA
CTCCGCTTGTGGGTGATGTCAGCTACGATAATTCACAAGAGGCTCAGCAT
CCTGTCGACCGTGGAGCACTCCAACTGTGCAGTAGAAGCATAACATTCCC
TCGCCTCACACAAATCCACTCTCCGAAGCGCCAAAAACGCAAAGGAAAAG
CGCCAAACCTTGTAACAGTTCAAGCTCCACTCCCCCCTCACATGAAGGAC
ACATGGCGGAGACTCGGAATGCAGGAACGTTTTGCAGCCGATTCCTAG
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Coding sequence (CDS) from alignment at tig00000213_pilon:116894..117991+

>Ggra9988.t1 ID=Ggra9988.t1|Name=Ggra9988.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1098bp|location=Sequence derived from alignment at tig00000213_pilon:116894..117991+ (Gracilaria gracilis GNS1m male)
ATGACGATATTTGCTACTCGTGTTTGTCCATACCTTTCAGTCAGGGCTCT
AGCTCGGCGCGCCTTCAGTTCGAAACCATTTCCATCTTCGCCAGATGTTT
CTTCTCCACGATCGTTGGAGCTTCCATGTGCTACCCAACCAGCGCGTTTC
AAGGTAGCGGAGGATCTCTCCGGCACACGACTCGATCGTTTTATCAAGAG
CAATGCGCCGGGTCTTCCGCCTGGTCTTATACACCGTCATATCCGTCAAT
CTCGCGTAAAAGTCAACGGGGCGGTCGAACGCAACCGTGCTACTACTGTT
CGTGCAAATGATGTGATTAGCTTCCCTGGTGACGTGAAACTCGGATTGAC
TCGACGGAAGAAGCGCCCACCTGCTAACGATGTCTCGCTTTCGGAAGCAA
TGCTTATCAAGCAATGGTTGCTTTACAGGGATGCCAGAGTTGCGGTGCTG
AACAAACCACCGGGCCTGCCAGTTCTCGATAGTCCTCACCAGGAATCATC
CCGGACTCTTGAACAGCTTCTTTGTGGACTGGGTACAGGTCGATATTGGT
TGGTACATCGCTTGCACACGATGGCTGGTGGTGCCATTATGGTGGCGAGG
GATGTTGGTGCCGTAACACTGCTTTCGGACTACTTCAGAGCGCGGATGGT
GACGCGAGTGTATTGGGGACTGGTCGCCGGCGTCCCTCGGAGCAAGAAGG
GAATTATAGACATTGATATTGGAGGCAAGAAGGCTGTAACGAGATACCGC
GTTGTTCAAATGGTGGATAACCATTATTCCTGGCTTGAGCTAGAACCTCG
AACAGGTCGTGCGAATCAGATTTCAATACACTGCGCGGACGGGCTTGGTA
CTCCGCTTGTGGGTGATGTCAGCTACGATAATTCACAAGAGGCTCAGCAT
CCTGTCGACCGTGGAGCACTCCAACTGTGCAGTAGAAGCATAACATTCCC
TCGCCTCACACAAATCCACTCTCCGAAGCGCCAAAAACGCAAAGGAAAAG
CGCCAAACCTTGTAACAGTTCAAGCTCCACTCCCCCCTCACATGAAGGAC
ACATGGCGGAGACTCGGAATGCAGGAACGTTTTGCAGCCGATTCCTAG
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