Ggra10004.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra10004.t1
Unique NameGgra10004.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length266
Homology
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A2V3IY17 (PHB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY17_9FLOR)

HSP 1 Score: 436 bits (1122), Expect = 3.110e-153
Identity = 221/263 (84.03%), Postives = 236/263 (89.73%), Query Frame = 0
Query:    3 PPAAAAMDDFSHTD-TPFKPDNTMCMSTPLDIILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLIVLVGDKDVTPTLQV 264
            PP  A M+DF+ T   PFKPDN MCMSTP+D I P L+CF+LPEKR+IVQLFFGKYHGTITEPGCYCRT +GME+R ++TDL TFDMANTKVLDARGNPVVISG+VTYFI+D RKAAIDVRDPHRFVHDQAPAVLKRVVS FPYES    +PSLRSET  VS+RMRD LQ KCAVAGV IVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIA+DAVQDMGTELQLSQEKKAELL NLLIVLVGDKDV PTLQV
Sbjct:    5 PPRTAGMEDFTTTTPVPFKPDNNMCMSTPIDWIFPFLSCFILPEKREIVQLFFGKYHGTITEPGCYCRTIIGMEMRHINTDLITFDMANTKVLDARGNPVVISGIVTYFIDDARKAAIDVRDPHRFVHDQAPAVLKRVVSNFPYESDDDSIPSLRSETAIVSDRMRDELQAKCAVAGVNIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIAMDAVQDMGTELQLSQEKKAELLGNLLIVLVGDKDVVPTLQV 267          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A2V3IY59 (PHB domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IY59_9FLOR)

HSP 1 Score: 347 bits (890), Expect = 3.100e-117
Identity = 171/269 (63.57%), Postives = 220/269 (81.78%), Query Frame = 0
Query:    4 PAAAAMDDFSHT-------DTPFKPDNTMCMSTPLDIILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLIVLVGDKDVTPTLQVA 265
            P +A MD+ +++           + DN + +STPLD   PC +CF++PEKR +V+LFFG YHGTI+EPG YCR+ +GMELR ++TDL T+DM +TKV+DARGNPV+ISG+VTY IE+ R+AAIDV +PH FV DQAPAVLKR+VS++PYES S +V SLR+ET ++SN+MRD LQT+CAVAGV+I++F+INELSYAPEIAQAMLKRQQAEAL+ AR AIV+GAK IALD V++MG E Q+  EKK +LLSNLLI+LV +K+V PTLQV+
Sbjct:   46 PPSAVMDNITNSPGRSTVNSNGEREDNVIFLSTPLDFFFPCNSCFIVPEKRSVVELFFGNYHGTISEPGFYCRSQIGMELRWLNTDLVTYDMKHTKVIDARGNPVIISGIVTYHIENGRRAAIDVSNPHNFVRDQAPAVLKRIVSKYPYESDSYEVASLRTETAEISNQMRDELQTRCAVAGVRILSFNINELSYAPEIAQAMLKRQQAEALISARRAIVQGAKQIALDTVKEMGEETQMPLEKKVDLLSNLLIILVSEKEVMPTLQVS 314          
BLAST of Ggra10004.t1 vs. uniprot
Match: R7QAB5 (PHB domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAB5_CHOCR)

HSP 1 Score: 321 bits (822), Expect = 2.310e-107
Identity = 152/243 (62.55%), Postives = 196/243 (80.66%), Query Frame = 0
Query:   22 DNTMCMSTPLDIILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLIVLVGDKDVTPTLQV 264
            DN  C S P D  + C  CF++PE+   V+L+FG YHGTIT+PGCYCR+   +ELR+V TDL+TFDM NTKVLD+RG+P+V+SG++T++I D R AAIDV +PH+++ DQAPA+LKR+VS +PYES   +VPSLR+ET++V+ RMRD LQ +C VAG++I +FS+NELSYAPEIA  MLKRQQAEAL+ AR AIV GAK IA DAV+D+G    ++ E+KA LLSNLL+VLVGDKDVTPT+ V
Sbjct:   43 DNVFCGSNPFDACILCNTCFIVPERTNYVELYFGSYHGTITKPGCYCRSAFAIELRQVKTDLSTFDMPNTKVLDSRGSPIVVSGIITFWIVDARAAAIDVANPHQYIRDQAPAILKRIVSMYPYESDDPNVPSLRTETSEVTARMRDTLQARCTVAGIRIESFSLNELSYAPEIASTMLKRQQAEALISARRAIVSGAKEIAKDAVEDVGGS--MTAEQKAGLLSNLLVVLVGDKDVTPTIAV 283          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A5J4YM08 (PHB domain-containing protein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YM08_PORPP)

HSP 1 Score: 248 bits (633), Expect = 8.640e-79
Identity = 128/252 (50.79%), Postives = 176/252 (69.84%), Query Frame = 0
Query:   13 SHTDTPFKPDNTMCMSTPLDI-ILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLIVLVGDKDVTPTLQ 263
            +H D   + DN+ C+ +PL   +  CL+  ++PEK   VQLF G+Y GTI EPGCYCR  L +  R+V   + T D+ NTK+LD RGNPV++SG+V+Y + D R+AA+DV+D HR+V DQAPAVLKR+V ++PY+SS+    SLR+ +  VS +++  LQ + AVAGVKI  F++NELSYAPEIA  MLKRQQA ALV AR  +V GA  IA +   +MG E  LS  ++ +L +NL++VLV D+D  PT+ 
Sbjct:   29 THDDN--RADNS-CLCSPLQWPLFCCLSALIVPEKESAVQLFCGRYDGTIEEPGCYCRNSLCITTRKVSLAIKTIDLVNTKILDLRGNPVIVSGIVSYQVFDPRRAALDVQDVHRYVGDQAPAVLKRIVCKYPYDSSAPGEMSLRANSDRVSAQLKTALQLRVAVAGVKIHFFNLNELSYAPEIAATMLKRQQAHALVDARRTLVSGASQIAAEVASNMGVE--LSAAERGKLAANLMLVLVSDRDAVPTIS 275          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A1X6NVP1 (PHB domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVP1_PORUM)

HSP 1 Score: 236 bits (602), Expect = 3.840e-74
Identity = 130/268 (48.51%), Postives = 180/268 (67.16%), Query Frame = 0
Query:    4 PAAAAMDDFSHTDTPF-KPDNTMCMSTPLDIILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSS----ADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAV--QDMGTELQLSQEKKAELLSNLLIVLVGDKDVTPTLQV 264
            P    M+  S   TP  K DN MC S  +D I+P   CFV+ E+  +V LF G Y GTI +PG Y R  + +E R+V   + + D+ N K  DA GNP+++SG+V++ + D R+AA+DV DP RFV DQAPAVLKRVV+Q+PYE  S     +VPSLR+ET  V+NR+  +LQ +  VAGV++++F +NELSYAPEIA++MLKRQ A+AL+ AR  IV GA  IA DAV  + +G    +S E++A  + +LLIVLVG++  +P + V
Sbjct:    8 PGVQTMEAQSDKPTPGGKRDNAMCSSYGMDYIIPLTTCFVVSEREAVVNLFCGNYIGTIDKPGFYLRNWVCVEGRKVSMAIQSLDVDNVKTADANGNPLLVSGIVSWSVVDARRAALDVADPRRFVADQAPAVLKRVVAQYPYEDDSPPGSVNVPSLRTETDVVANRLCAMLQARVDVAGVRVLSFQLNELSYAPEIAESMLKRQAADALIAARAKIVAGAVGIARDAVASEALGA---MSDEERARTVRDLLIVLVGERQASPVMTV 272          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A2V3IUZ2 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IUZ2_9FLOR)

HSP 1 Score: 196 bits (499), Expect = 4.290e-60
Identity = 95/127 (74.80%), Postives = 106/127 (83.46%), Query Frame = 0
Query:   19 FKPDNTMCMSTPLDIILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPY 145
            FKPDN MCMSTPLD ILPCL+ FV+PEK+++VQLFFGKYHGTITEPGCY RT +GME RRVDT L TFD  N +VLDA GN  +IS +VTYFIED+RKAAIDV +PHRFV DQAP VLKRVVS   Y
Sbjct:   22 FKPDNFMCMSTPLDWILPCLSYFVMPEKQKLVQLFFGKYHGTITEPGCYFRTTIGMERRRVDTGLITFDTTNVEVLDACGNFDIISEIVTYFIEDSRKAAIDVWNPHRFVRDQAPVVLKRVVSHIAY 148          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A0L0FN57 (PHB domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FN57_9EUKA)

HSP 1 Score: 194 bits (494), Expect = 1.810e-58
Identity = 101/228 (44.30%), Postives = 150/228 (65.79%), Query Frame = 0
Query:   38 LNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTE-LQLSQEKKAELLSNLLIVLVGDKDVTPTLQV 264
            ++CF L  + + V L +G Y GTI EPGC+     G E+R + T   + D+ N KVLD  GNP+++S ++TY   D++KA ++V  P+ +V  QA A LK++VSQFPYES   D PSL++E+  + N MRD LQ   A AG  I +  +NEL+YAPE+A AMLK+QQA+A++ ARE IV+GA  I+  A++ +    L+++  ++ +L++NLL V   D D  PT+QV
Sbjct:    1 MSCFTLNTRSEAVILHYGTYTGTIDEPGCHFVNCFGREIRTILTSQKSVDIPNVKVLDGNGNPIIVSAILTYRFVDSKKALLNVLSPNEYVMTQASATLKQIVSQFPYESEG-DEPSLKNESQHIGNLMRDALQKTVAPAGAIIQSMQLNELNYAPEVANAMLKKQQAKAMIAAREHIVQGAVAISQMAIKQLEAGGLEMTAGERVKLITNLLTVTCSDSDTVPTVQV 227          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A7S1HQK9 (Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S1HQK9_9EUKA)

HSP 1 Score: 194 bits (493), Expect = 3.550e-57
Identity = 114/273 (41.76%), Postives = 169/273 (61.90%), Query Frame = 0
Query:    6 AAAMDDFSHTDTPFKPDNTMCMSTPLDIILPCL-------NCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVP-------SLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTE-LQLSQEKKAELLSNLLIVLVGDKDVTPTLQ 263
            AA      H D P+   N  C S PL   L  L       +C V+ EK   + L +GK+   + EPGCY     G  L +V T   T D+ N K+LD +GNPVV+SGVV + +E  + A+++V++ +++V+  A A LK+VVS++PYE              SL++E   VS  +++VLQ + A AGV+++ F++ +LSYAPEIAQAML RQQAEA+V+AR+ IV+GA +I+ DAVQ +  + L +S  +KA++++NLL V+ G+   TPTLQ
Sbjct:   44 AAGTAQIEH-DPPYSAANFCCPS-PLSFALSLLCPFSWLGSCRVINEKEGAMLLTWGKFSSVVAEPGCYILNPCGTALSKVSTKQQTTDLPNVKLLDLKGNPVVVSGVVFWQVEGIKAASLNVQNVYQYVNTTAMATLKQVVSKYPYEDDXXXXXXXXSHGLSLKTEAMQVSMELKEVLQQRLAHAGVRVIAFNMTDLSYAPEIAQAMLVRQQAEAMVKARKLIVKGAVNISEDAVQQLEEKGLTMSAPEKAKVVTNLLTVICGESGATPTLQ 314          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A1Y2B2Z2 (PHB domain-containing protein n=1 Tax=Neocallimastix californiae TaxID=1754190 RepID=A0A1Y2B2Z2_9FUNG)

HSP 1 Score: 188 bits (477), Expect = 3.210e-55
Identity = 99/246 (40.24%), Postives = 159/246 (64.63%), Query Frame = 0
Query:   19 FKPDNTMCMSTPLDIILPCLNCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSADVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGT-ELQLSQEKKAELLSNLLIVLVGDKDVTPTLQ 263
            F  D   C+  PL+    C  C  + EK  ++   FG+Y  TIT PG +      +++  V T LNT D+ N K++D+ GNP+++S +V Y I +++KA  +V + + FV DQ+ AVL++VVS++PYE+   D P+L+ E  ++   +R+VLQ K A+AG+ I +  +NELSYA EIA AMLK+QQA+A+V ARE I+RG   +A+ AV  +   ++ ++  +KA+L++N+L V + D++  PT+Q
Sbjct:   38 FVLDIIACIFLPLNF---CSGCVTVNEKEDVIVQRFGEYKNTITSPGLHWCFPNQLQISHVSTKLNTLDLKNIKIIDSVGNPIMVSAIVVYKIVNSKKAYFNVENYNEFVEDQSQAVLRQVVSKYPYETDD-DSPNLKKENKEIQMELRNVLQEKVAIAGIYIKSVMLNELSYAVEIAAAMLKKQQAKAIVDAREIILRGTIDLAVGAVSSLQDHDITMNDNQKAQLVTNILTVSLSDREAQPTVQ 279          
BLAST of Ggra10004.t1 vs. uniprot
Match: A0A5B8MIQ9 (PHB domain-containing protein n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MIQ9_9CHLO)

HSP 1 Score: 187 bits (475), Expect = 1.170e-54
Identity = 107/258 (41.47%), Postives = 159/258 (61.63%), Query Frame = 0
Query:   26 CMSTPLDIILPCL-------NCFVLPEKRQIVQLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNPVVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSS-ADVPS----------LRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAMLKRQQAEALVQAREAIVRGAKHIALDAVQDMGTE-LQLSQEKKAELLSNLLIVLVGDKDVTPTLQV 264
            C  +PL   L          +C V+ EK   + L +GKY   + EPG Y     G  L +V T   T D+ N K+LD +GNPVV+SGVV + I   + + ++V + +R+V+  A A LK+VVS++PYE+    D PS          L++E   VS  ++DVLQ + A AGVK++ F++ +LSYAPEIAQAML RQQAEA+V+AR  IV+GA  I+ DAV  +  + +++S+ +K ++++NLL V+ GD+  TPTL +
Sbjct:   43 CCPSPLSCFLSLCCPFAWLGSCRVVSEKEGALLLTWGKYTSVVKEPGIYILNPCGTTLSKVSTKQQTTDLPNVKLLDLKGNPVVVSGVVFWSIVGVKASVLNVENVYRYVNTTAMATLKQVVSKYPYEADEEGDAPSGGRSTRHGLSLKTEAAQVSKELKDVLQDRLAHAGVKVLAFNLTDLSYAPEIAQAMLVRQQAEAMVKARRLIVKGAVDISEDAVTQLDNKGVKMSEAEKTKVVTNLLTVICGDQKATPTLSI 300          
The following BLAST results are available for this feature:
BLAST of Ggra10004.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IY173.110e-15384.03PHB domain-containing protein n=1 Tax=Gracilariops... [more]
A0A2V3IY593.100e-11763.57PHB domain-containing protein n=1 Tax=Gracilariops... [more]
R7QAB52.310e-10762.55PHB domain-containing protein n=1 Tax=Chondrus cri... [more]
A0A5J4YM088.640e-7950.79PHB domain-containing protein n=1 Tax=Porphyridium... [more]
A0A1X6NVP13.840e-7448.51PHB domain-containing protein n=1 Tax=Porphyra umb... [more]
A0A2V3IUZ24.290e-6074.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A0L0FN571.810e-5844.30PHB domain-containing protein n=1 Tax=Sphaeroforma... [more]
A0A7S1HQK93.550e-5741.76Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 ... [more]
A0A1Y2B2Z23.210e-5540.24PHB domain-containing protein n=1 Tax=Neocallimast... [more]
A0A5B8MIQ91.170e-5441.47PHB domain-containing protein n=1 Tax=Chloropicon ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001107Band 7 domainSMARTSM00244PHB_4coord: 38..203
e-value: 8.1E-4
score: 26.0
IPR001107Band 7 domainPFAMPF01145Band_7coord: 47..218
e-value: 5.3E-21
score: 75.4
IPR036013Band 7/SPFH domain superfamilyGENE3D3.30.479.30Band 7 domaincoord: 74..205
e-value: 3.1E-20
score: 74.6
IPR036013Band 7/SPFH domain superfamilySUPERFAMILY117892Band 7/SPFH domaincoord: 76..207
NoneNo IPR availablePANTHERPTHR43446MEMBRANE PROTEIN-RELATEDcoord: 44..263

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:156984..157781 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10004.t1Ggra10004.t1Gracilaria gracilis GNS1m malemRNAtig00000213_pilon 156984..157781 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra10004.t1 ID=Ggra10004.t1|Name=Ggra10004.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=266bp
MEPPAAAAMDDFSHTDTPFKPDNTMCMSTPLDIILPCLNCFVLPEKRQIV
QLFFGKYHGTITEPGCYCRTGLGMELRRVDTDLNTFDMANTKVLDARGNP
VVISGVVTYFIEDTRKAAIDVRDPHRFVHDQAPAVLKRVVSQFPYESSSA
DVPSLRSETTDVSNRMRDVLQTKCAVAGVKIVTFSINELSYAPEIAQAML
KRQQAEALVQAREAIVRGAKHIALDAVQDMGTELQLSQEKKAELLSNLLI
VLVGDKDVTPTLQVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001107Band_7
IPR036013Band_7/SPFH_dom_sf