Ggra9978.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9978.t1
Unique NameGgra9978.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length482
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:86280..87808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FN95
PFAMsIon_trans_2
Max annot lvl2759|Eukaryota
KEGG koko:K05389
KEGG TC1.A.1.7
Evalue8.45e-33
EggNOG OGsKOG1418@1|root,KOG1418@2759|Eukaryota
Descriptionpotassium channel activity
COG categoryU
BRITEko00000,ko04040
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9978Ggra9978Gracilaria gracilis GNS1m malegenetig00000213_pilon 86280..87808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9978.t1Ggra9978.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 86280..87808 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9978.t1.start1Ggra9978.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 86280..86282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9978.t1.CDS1Ggra9978.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 86280..86673 +
Ggra9978.t1.CDS2Ggra9978.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 86757..87808 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9978.t1.exon1Ggra9978.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 86280..86673 +
Ggra9978.t1.exon2Ggra9978.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 86757..87808 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9978.t1.intron1Ggra9978.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 86674..86756 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9978.t1.stop1Ggra9978.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 87806..87808 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9978.t1 ID=Ggra9978.t1|Name=Ggra9978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=482bp
MYQSQGLKPFLASLLKVDGACFGPPFPTITLMAIDANERIDDMKPAAASQ
QLSLGHERVTLRTMHVARYATLLGKYYSCTCAEYQWPPLDEQNTVPIASL
IRTTSPTLAGYVTLSSNRGLSIEAVCDCLPSRMATPQSAYEVQGNGESKP
FLKRWSRRYGALSRISKRFREGDKSREAIEDVLRDMENSERLSGRMFVGS
MLAILSHVAIGTLVLRWLEGWSLFDAAYFCVVTTTTVGYGDITPSRSISK
AFVIYYVVVSIVIISALLALVIGTLLDRQEELLLKAIAGDEDSDEEEQRT
EVIRESALDKSDIHELVVSMFWLMVILSIGVFIFTWNENLSLLNAMYVTI
ISASTVGFGDLQPTKDSSKLFMTVWLCFSTIYTATVVGEVAGLFAKLKQH
SATRRLLNATMDMKTLMRMDQNNDNRVDKAEFLAQMLIRTGKVGDDDVAP
LLRRFNQLDKDNNGFIGKDDVLHELTTEAGK*
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spliced messenger RNA

>Ggra9978.t1 ID=Ggra9978.t1|Name=Ggra9978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1446bp|location=Sequence derived from alignment at tig00000213_pilon:86280..87808+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACCAATCCCAGGGCCTAAAACCTTTTCTCGCATCGCTACTGAAAGT
GGATGGGGCATGTTTTGGGCCACCATTTCCCACTATCACACTCATGGCAA
TCGACGCTAACGAACGAATCGATGATATGAAGCCTGCAGCCGCGTCACAA
CAGCTTTCTCTGGGACATGAAAGAGTCACTCTGCGCACTATGCATGTCGC
GAGGTATGCAACTTTGTTGGGCAAATACTATTCCTGCACATGTGCTGAGT
ACCAGTGGCCGCCGTTGGACGAACAGAATACTGTGCCAATTGCGTCCCTT
ATTCGAACGACATCTCCGACACTTGCAGGATACGTCACTTTGTCTAGTAA
TCGCGGGTTAAGCATCGAGGCCGTCTGCGATTGTCTTCCTTCGAGGATGG
CCACCCCTCAGTCCGCTTACGAAGTTCAAGGGAACGGAGAGTCCAAACCG
TTCCTGAAGCGCTGGTCTCGAAGATATGGCGCGCTCAGTCGAATTTCCAA
GCGCTTCAGGGAAGGTGACAAGAGCAGGGAAGCCATCGAAGACGTGCTCC
GCGATATGGAGAACTCTGAGCGATTGAGTGGCAGAATGTTTGTCGGCTCG
ATGCTTGCAATCTTGTCGCATGTGGCCATTGGTACCTTGGTGCTGCGCTG
GTTGGAGGGGTGGTCACTGTTTGACGCAGCTTACTTTTGCGTTGTGACGA
CGACTACGGTCGGTTACGGTGACATCACTCCATCGCGCAGCATCTCCAAA
GCATTCGTTATCTACTACGTGGTTGTGTCGATTGTGATCATCTCTGCATT
GCTGGCGCTTGTTATAGGCACGCTACTAGACCGACAAGAGGAACTGCTGC
TGAAGGCTATTGCCGGAGATGAGGACTCAGATGAAGAAGAGCAGCGAACA
GAGGTAATTCGTGAAAGCGCGCTGGACAAATCGGACATTCACGAGTTGGT
TGTATCCATGTTTTGGCTGATGGTAATTCTGTCTATTGGGGTATTCATAT
TCACATGGAACGAGAATCTCTCACTTCTCAACGCGATGTACGTGACCATC
ATATCGGCGTCGACAGTAGGCTTTGGTGACCTTCAACCAACGAAGGACTC
GTCCAAGCTATTCATGACCGTGTGGCTGTGCTTTTCAACTATCTATACCG
CAACGGTGGTGGGAGAAGTGGCGGGCTTGTTCGCCAAACTGAAGCAACAC
TCAGCTACACGCCGACTACTAAACGCGACGATGGACATGAAGACGCTGAT
GCGCATGGATCAGAACAATGACAACCGTGTGGACAAAGCAGAGTTCCTCG
CACAGATGCTGATACGTACCGGCAAGGTAGGCGACGACGACGTTGCACCA
TTGCTACGCCGCTTCAACCAGTTGGATAAGGACAACAACGGCTTCATTGG
AAAGGACGACGTGCTCCACGAGCTAACGACGGAAGCGGGGAAGTGA
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protein sequence of Ggra9978.t1

>Ggra9978.t1 ID=Ggra9978.t1|Name=Ggra9978.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=482bp
MYQSQGLKPFLASLLKVDGACFGPPFPTITLMAIDANERIDDMKPAAASQ
QLSLGHERVTLRTMHVARYATLLGKYYSCTCAEYQWPPLDEQNTVPIASL
IRTTSPTLAGYVTLSSNRGLSIEAVCDCLPSRMATPQSAYEVQGNGESKP
FLKRWSRRYGALSRISKRFREGDKSREAIEDVLRDMENSERLSGRMFVGS
MLAILSHVAIGTLVLRWLEGWSLFDAAYFCVVTTTTVGYGDITPSRSISK
AFVIYYVVVSIVIISALLALVIGTLLDRQEELLLKAIAGDEDSDEEEQRT
EVIRESALDKSDIHELVVSMFWLMVILSIGVFIFTWNENLSLLNAMYVTI
ISASTVGFGDLQPTKDSSKLFMTVWLCFSTIYTATVVGEVAGLFAKLKQH
SATRRLLNATMDMKTLMRMDQNNDNRVDKAEFLAQMLIRTGKVGDDDVAP
LLRRFNQLDKDNNGFIGKDDVLHELTTEAGK*
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mRNA from alignment at tig00000213_pilon:86280..87808+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9978.t1 ID=Ggra9978.t1|Name=Ggra9978.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1529bp|location=Sequence derived from alignment at tig00000213_pilon:86280..87808+ (Gracilaria gracilis GNS1m male)
ATGTACCAATCCCAGGGCCTAAAACCTTTTCTCGCATCGCTACTGAAAGT
GGATGGGGCATGTTTTGGGCCACCATTTCCCACTATCACACTCATGGCAA
TCGACGCTAACGAACGAATCGATGATATGAAGCCTGCAGCCGCGTCACAA
CAGCTTTCTCTGGGACATGAAAGAGTCACTCTGCGCACTATGCATGTCGC
GAGGTATGCAACTTTGTTGGGCAAATACTATTCCTGCACATGTGCTGAGT
ACCAGTGGCCGCCGTTGGACGAACAGAATACTGTGCCAATTGCGTCCCTT
ATTCGAACGACATCTCCGACACTTGCAGGATACGTCACTTTGTCTAGTAA
TCGCGGGTTAAGCATCGAGGCCGTCTGCGATTGTCTTCCTTCGAGTGTGC
ATTGCGTTGTAAAAGAGTACATTGAAGACGCACGGGACCTATTTCGACAC
GCATGGGAGAAGAACCGCTGTTCGCAGGGATGGCCACCCCTCAGTCCGCT
TACGAAGTTCAAGGGAACGGAGAGTCCAAACCGTTCCTGAAGCGCTGGTC
TCGAAGATATGGCGCGCTCAGTCGAATTTCCAAGCGCTTCAGGGAAGGTG
ACAAGAGCAGGGAAGCCATCGAAGACGTGCTCCGCGATATGGAGAACTCT
GAGCGATTGAGTGGCAGAATGTTTGTCGGCTCGATGCTTGCAATCTTGTC
GCATGTGGCCATTGGTACCTTGGTGCTGCGCTGGTTGGAGGGGTGGTCAC
TGTTTGACGCAGCTTACTTTTGCGTTGTGACGACGACTACGGTCGGTTAC
GGTGACATCACTCCATCGCGCAGCATCTCCAAAGCATTCGTTATCTACTA
CGTGGTTGTGTCGATTGTGATCATCTCTGCATTGCTGGCGCTTGTTATAG
GCACGCTACTAGACCGACAAGAGGAACTGCTGCTGAAGGCTATTGCCGGA
GATGAGGACTCAGATGAAGAAGAGCAGCGAACAGAGGTAATTCGTGAAAG
CGCGCTGGACAAATCGGACATTCACGAGTTGGTTGTATCCATGTTTTGGC
TGATGGTAATTCTGTCTATTGGGGTATTCATATTCACATGGAACGAGAAT
CTCTCACTTCTCAACGCGATGTACGTGACCATCATATCGGCGTCGACAGT
AGGCTTTGGTGACCTTCAACCAACGAAGGACTCGTCCAAGCTATTCATGA
CCGTGTGGCTGTGCTTTTCAACTATCTATACCGCAACGGTGGTGGGAGAA
GTGGCGGGCTTGTTCGCCAAACTGAAGCAACACTCAGCTACACGCCGACT
ACTAAACGCGACGATGGACATGAAGACGCTGATGCGCATGGATCAGAACA
ATGACAACCGTGTGGACAAAGCAGAGTTCCTCGCACAGATGCTGATACGT
ACCGGCAAGGTAGGCGACGACGACGTTGCACCATTGCTACGCCGCTTCAA
CCAGTTGGATAAGGACAACAACGGCTTCATTGGAAAGGACGACGTGCTCC
ACGAGCTAACGACGGAAGCGGGGAAGTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:86280..87808+

>Ggra9978.t1 ID=Ggra9978.t1|Name=Ggra9978.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1446bp|location=Sequence derived from alignment at tig00000213_pilon:86280..87808+ (Gracilaria gracilis GNS1m male)
ATGTACCAATCCCAGGGCCTAAAACCTTTTCTCGCATCGCTACTGAAAGT
GGATGGGGCATGTTTTGGGCCACCATTTCCCACTATCACACTCATGGCAA
TCGACGCTAACGAACGAATCGATGATATGAAGCCTGCAGCCGCGTCACAA
CAGCTTTCTCTGGGACATGAAAGAGTCACTCTGCGCACTATGCATGTCGC
GAGGTATGCAACTTTGTTGGGCAAATACTATTCCTGCACATGTGCTGAGT
ACCAGTGGCCGCCGTTGGACGAACAGAATACTGTGCCAATTGCGTCCCTT
ATTCGAACGACATCTCCGACACTTGCAGGATACGTCACTTTGTCTAGTAA
TCGCGGGTTAAGCATCGAGGCCGTCTGCGATTGTCTTCCTTCGAGGATGG
CCACCCCTCAGTCCGCTTACGAAGTTCAAGGGAACGGAGAGTCCAAACCG
TTCCTGAAGCGCTGGTCTCGAAGATATGGCGCGCTCAGTCGAATTTCCAA
GCGCTTCAGGGAAGGTGACAAGAGCAGGGAAGCCATCGAAGACGTGCTCC
GCGATATGGAGAACTCTGAGCGATTGAGTGGCAGAATGTTTGTCGGCTCG
ATGCTTGCAATCTTGTCGCATGTGGCCATTGGTACCTTGGTGCTGCGCTG
GTTGGAGGGGTGGTCACTGTTTGACGCAGCTTACTTTTGCGTTGTGACGA
CGACTACGGTCGGTTACGGTGACATCACTCCATCGCGCAGCATCTCCAAA
GCATTCGTTATCTACTACGTGGTTGTGTCGATTGTGATCATCTCTGCATT
GCTGGCGCTTGTTATAGGCACGCTACTAGACCGACAAGAGGAACTGCTGC
TGAAGGCTATTGCCGGAGATGAGGACTCAGATGAAGAAGAGCAGCGAACA
GAGGTAATTCGTGAAAGCGCGCTGGACAAATCGGACATTCACGAGTTGGT
TGTATCCATGTTTTGGCTGATGGTAATTCTGTCTATTGGGGTATTCATAT
TCACATGGAACGAGAATCTCTCACTTCTCAACGCGATGTACGTGACCATC
ATATCGGCGTCGACAGTAGGCTTTGGTGACCTTCAACCAACGAAGGACTC
GTCCAAGCTATTCATGACCGTGTGGCTGTGCTTTTCAACTATCTATACCG
CAACGGTGGTGGGAGAAGTGGCGGGCTTGTTCGCCAAACTGAAGCAACAC
TCAGCTACACGCCGACTACTAAACGCGACGATGGACATGAAGACGCTGAT
GCGCATGGATCAGAACAATGACAACCGTGTGGACAAAGCAGAGTTCCTCG
CACAGATGCTGATACGTACCGGCAAGGTAGGCGACGACGACGTTGCACCA
TTGCTACGCCGCTTCAACCAGTTGGATAAGGACAACAACGGCTTCATTGG
AAAGGACGACGTGCTCCACGAGCTAACGACGGAAGCGGGGAAGTGA
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