Ggra9985.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9985.t1
Unique NameGgra9985.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length190
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:101276..101845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9985Ggra9985Gracilaria gracilis GNS1m malegenetig00000213_pilon 101276..101845 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9985.t1.start1Ggra9985.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 101276..101278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9985.t1.CDS1Ggra9985.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 101276..101845 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9985.t1.exon1Ggra9985.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 101276..101845 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9985.t1.stop1Ggra9985.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 101843..101845 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9985.t1Ggra9985.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 101276..101845 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9985.t1 ID=Ggra9985.t1|Name=Ggra9985.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=190bp
MARRRTAYPCEDALPTELLPESLLGSLSDEDDGADDGVEVVKRMLDASPS
ARAPILSQTNIDRIFANWDVDLCPAQARYVVDTPPSFVSSSSSCGTRLNQ
ERQWCYGEDCTVADIFTRVVPDRQKEELKRRLPARRWSDAVTRFRILCGE
VVDNCTEKPERKPFWRRGSRTETKLRIQCPIRKTLAKFR*
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spliced messenger RNA

>Ggra9985.t1 ID=Ggra9985.t1|Name=Ggra9985.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000213_pilon:101276..101845+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAGACGGAGAACCGCTTACCCATGCGAAGACGCCCTTCCCACCGA
GTTGCTACCCGAGTCGCTTCTCGGCTCGCTCAGcgacgaggacgacggcg
cggacgacggcgtcgaAGTGGTCAAGAGGATGTTGGACGCGTCGCCGTCC
GCCAGGGCGCCCATCCTGTCGCAGACCAACATCGACCGCATCTTTGCCAA
CTGGGACGTTGACCTGTGCCCCGCGCAGGCGCGCTACGTTGTCGATACTC
CCCCGTCCTTCGTGTCCAGCTCCTCTTCGTGTGGCACGCGACTCAACCAG
GAGAGGCAGTGGTGCTACGGCGAGGACTGCACTGTTGCGGACATATTCAC
TCGCGTCGTCCCGGATAGACAGAAGGAAGAGCTCAAGAGAAGACTGCCCG
CACGCCGTTGGTCAGACGCCGTCACTAGGTTCCGCATCTTGTGCGGAGAA
GTGGTGGATAACTGCACCGAGAAGCCGGAACGAAAGCCGTTCTGGAGAAG
GGGCAGTCGCACAGAAACCAAGCTCAGGATTCAATGCCCGATTCGAAAGA
CGCTGGCCAAGTTTCGGTAG
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protein sequence of Ggra9985.t1

>Ggra9985.t1 ID=Ggra9985.t1|Name=Ggra9985.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=190bp
MARRRTAYPCEDALPTELLPESLLGSLSDEDDGADDGVEVVKRMLDASPS
ARAPILSQTNIDRIFANWDVDLCPAQARYVVDTPPSFVSSSSSCGTRLNQ
ERQWCYGEDCTVADIFTRVVPDRQKEELKRRLPARRWSDAVTRFRILCGE
VVDNCTEKPERKPFWRRGSRTETKLRIQCPIRKTLAKFR*
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mRNA from alignment at tig00000213_pilon:101276..101845+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9985.t1 ID=Ggra9985.t1|Name=Ggra9985.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=570bp|location=Sequence derived from alignment at tig00000213_pilon:101276..101845+ (Gracilaria gracilis GNS1m male)
ATGGCCAGACGGAGAACCGCTTACCCATGCGAAGACGCCCTTCCCACCGA
GTTGCTACCCGAGTCGCTTCTCGGCTCGCTCAGcgacgaggacgacggcg
cggacgacggcgtcgaAGTGGTCAAGAGGATGTTGGACGCGTCGCCGTCC
GCCAGGGCGCCCATCCTGTCGCAGACCAACATCGACCGCATCTTTGCCAA
CTGGGACGTTGACCTGTGCCCCGCGCAGGCGCGCTACGTTGTCGATACTC
CCCCGTCCTTCGTGTCCAGCTCCTCTTCGTGTGGCACGCGACTCAACCAG
GAGAGGCAGTGGTGCTACGGCGAGGACTGCACTGTTGCGGACATATTCAC
TCGCGTCGTCCCGGATAGACAGAAGGAAGAGCTCAAGAGAAGACTGCCCG
CACGCCGTTGGTCAGACGCCGTCACTAGGTTCCGCATCTTGTGCGGAGAA
GTGGTGGATAACTGCACCGAGAAGCCGGAACGAAAGCCGTTCTGGAGAAG
GGGCAGTCGCACAGAAACCAAGCTCAGGATTCAATGCCCGATTCGAAAGA
CGCTGGCCAAGTTTCGGTAG
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Coding sequence (CDS) from alignment at tig00000213_pilon:101276..101845+

>Ggra9985.t1 ID=Ggra9985.t1|Name=Ggra9985.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=570bp|location=Sequence derived from alignment at tig00000213_pilon:101276..101845+ (Gracilaria gracilis GNS1m male)
ATGGCCAGACGGAGAACCGCTTACCCATGCGAAGACGCCCTTCCCACCGA
GTTGCTACCCGAGTCGCTTCTCGGCTCGCTCAGcgacgaggacgacggcg
cggacgacggcgtcgaAGTGGTCAAGAGGATGTTGGACGCGTCGCCGTCC
GCCAGGGCGCCCATCCTGTCGCAGACCAACATCGACCGCATCTTTGCCAA
CTGGGACGTTGACCTGTGCCCCGCGCAGGCGCGCTACGTTGTCGATACTC
CCCCGTCCTTCGTGTCCAGCTCCTCTTCGTGTGGCACGCGACTCAACCAG
GAGAGGCAGTGGTGCTACGGCGAGGACTGCACTGTTGCGGACATATTCAC
TCGCGTCGTCCCGGATAGACAGAAGGAAGAGCTCAAGAGAAGACTGCCCG
CACGCCGTTGGTCAGACGCCGTCACTAGGTTCCGCATCTTGTGCGGAGAA
GTGGTGGATAACTGCACCGAGAAGCCGGAACGAAAGCCGTTCTGGAGAAG
GGGCAGTCGCACAGAAACCAAGCTCAGGATTCAATGCCCGATTCGAAAGA
CGCTGGCCAAGTTTCGGTAG
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