Ggra9999.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra9999.t1
Unique NameGgra9999.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length445
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000213_piloncontigtig00000213_pilon:141964..143368 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog35754.JNYJ01000093_gene9263
PFAMsInhibitor_I9,P_proprotein,Peptidase_S8
Max annot lvl201174|Actinobacteria
Evalue2.61e-47
EggNOG OGsCOG1404@1|root,COG4935@1|root,COG1404@2|Bacteria,COG4935@2|Bacteria,2GJYH@201174|Actinobacteria,4DADU@85008|Micromonosporales
DescriptionBelongs to the peptidase S8 family
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra9999Ggra9999Gracilaria gracilis GNS1m malegenetig00000213_pilon 141964..143368 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9999.t1Ggra9999.t1Gracilaria gracilis GNS1m malepolypeptidetig00000213_pilon 141964..143368 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9999.t1.start1Ggra9999.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000213_pilon 141964..141966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9999.t1.CDS1Ggra9999.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000213_pilon 141964..143232 +
Ggra9999.t1.CDS2Ggra9999.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000213_pilon 143303..143368 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9999.t1.exon1Ggra9999.t1.exon1Gracilaria gracilis GNS1m maleexontig00000213_pilon 141964..143232 +
Ggra9999.t1.exon2Ggra9999.t1.exon2Gracilaria gracilis GNS1m maleexontig00000213_pilon 143303..143368 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9999.t1.intron1Ggra9999.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000213_pilon 143233..143302 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra9999.t1.stop1Ggra9999.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000213_pilon 143366..143368 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra9999.t1 ID=Ggra9999.t1|Name=Ggra9999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=445bp
MFAYRKSEDNDLQFLSSRFIERSSYGKYRTQIHSSVHLDDLVNHYQIFRL
IPGCDTACVKHVMGFLKVAKCRDIRHLISLRIVEARCDGYDRLSAHEIGE
YILKHERGVQLQYDNSLLPPFDNGERVDSFNPKVEKHISDLVQNTENSSL
PTSSRHVQIERDLPWNLDRIDQEKKEGLDSRLDLTCFPRLGKDVFIYVLD
SGCLASHEEFTGRIEGAAVGRYTTFEDKHGHGTHITGTAAGSSLGVCKEC
NIICVKTLDEHNKGSVMDVLNSIDWVIGHRHSSGDYPGVAVLSLGGKIST
DLLDKGVGSLLDNGIIPVVAAGNGYTDACTWSPARSKKAITVAASTIDDF
TRISSNGGHCIDIAAPGEYIKSAAISSNSGTIHMSGTSMSAPLVAGTVGL
LLGENPFLGLHEIMKLLTHNSAPEKITITKALNTMRRRQHLFSH*
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spliced messenger RNA

>Ggra9999.t1 ID=Ggra9999.t1|Name=Ggra9999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1335bp|location=Sequence derived from alignment at tig00000213_pilon:141964..143368+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCCTACCGGAAATCAGAGGATAATGACCTTCAGTTTCTGAGCAG
CAGGTTTATCGAACGTTCAAGTTATGGGAAGTACAGAACTCAAATTCACA
GCTCAGTTCACCTAGATGATCTGGTTAACCATTATCAAATATTTCGCCTC
ATTCCGGGATGCGATACTGCATGTGTCAAACATGTTATGGGTTTTCTCAA
GGTGGCCAAGTGCAGAGATATTCGTCACCTGATATCGCTTCGAATTGTTG
AAGCCCGCTGTGATGGGTATGATCGACTTTCTGCTCATGAGATTGGAGAG
TACATATTGAAGCATGAAAGAGGCGTTCAGCTTCAATACGACAATTCGTT
GCTTCCACCTTTCGACAATGGAGAAAGGGTAGATTCCTTCAATCCAAAAG
TTGAAAAGCATATCAGCGATTTGGTTCAGAACACAGAAAACAGTTCTCTA
CCCACTTCCAGCAGACATGTGCAGATCGAAAGAGACTTGCCGTGGAATTT
GGATCGCATCGATCAAGAGAAGAAGGAAGGGCTTGACTCCCGATTAGACC
TAACATGTTTCCCAAGGCTTGGAAAAGATGTGTTCATTTACGTTTTGGAT
TCTGGATGTCTTGCTTCTCATGAGGAATTTACTGGGAGAATTGAAGGCGC
AGCCGTCGGTCGATACACAACTTTTGAAGATAAACACGGACATGGGACTC
ACATTACGGGTACTGCAGCTGGGTCTTCCCTTGGCGTGTGTAAGGAATGT
AACATAATATGCGTGAAAACTCTTGACGAACACAACAAAGGATCCGTGAT
GGATGTTTTGAACTCAATAGATTGGGTAATCGGCCATAGACATTCCTCCG
GAGATTATCCAGGCGTGGCAGTACTCTCTCTGGGAGGAAAGATATCGACA
GACCTCTTGGACAAAGGTGTGGGAAGCTTACTGGATAATGGAATAATTCC
TGTAGTGGCTGCCGGAAACGGATATACTGATGCGTGTACATGGTCCCCTG
CCCGCTCTAAGAAGGCGATCACAGTCGCTGCTTCAACCATAGATGATTTC
ACTAGGATATCAAGCAACGGCGGACACTGCATTGATATTGCTGCCCCAGG
GGAATATATCAAGTCAGCTGCAATCAGTTCGAACAGTGGAACTATTCATA
TGTCTGGAACATCTATGTCCGCACCTTTGGTCGCTGGGACTGTTGGACTT
CTATTAGGCGAGAATCCATTCCTTGGTCTTCATGAGATAATGAAACTGCT
CACACATAATTCAGCGCCCGAGAAGATCACCATTACCAAAGCTCTGAATA
CCATGCGGCGCAGGCAGCATCTGTTTTCCCACTGA
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protein sequence of Ggra9999.t1

>Ggra9999.t1 ID=Ggra9999.t1|Name=Ggra9999.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=445bp
MFAYRKSEDNDLQFLSSRFIERSSYGKYRTQIHSSVHLDDLVNHYQIFRL
IPGCDTACVKHVMGFLKVAKCRDIRHLISLRIVEARCDGYDRLSAHEIGE
YILKHERGVQLQYDNSLLPPFDNGERVDSFNPKVEKHISDLVQNTENSSL
PTSSRHVQIERDLPWNLDRIDQEKKEGLDSRLDLTCFPRLGKDVFIYVLD
SGCLASHEEFTGRIEGAAVGRYTTFEDKHGHGTHITGTAAGSSLGVCKEC
NIICVKTLDEHNKGSVMDVLNSIDWVIGHRHSSGDYPGVAVLSLGGKIST
DLLDKGVGSLLDNGIIPVVAAGNGYTDACTWSPARSKKAITVAASTIDDF
TRISSNGGHCIDIAAPGEYIKSAAISSNSGTIHMSGTSMSAPLVAGTVGL
LLGENPFLGLHEIMKLLTHNSAPEKITITKALNTMRRRQHLFSH*
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mRNA from alignment at tig00000213_pilon:141964..143368+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra9999.t1 ID=Ggra9999.t1|Name=Ggra9999.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1405bp|location=Sequence derived from alignment at tig00000213_pilon:141964..143368+ (Gracilaria gracilis GNS1m male)
ATGTTCGCCTACCGGAAATCAGAGGATAATGACCTTCAGTTTCTGAGCAG
CAGGTTTATCGAACGTTCAAGTTATGGGAAGTACAGAACTCAAATTCACA
GCTCAGTTCACCTAGATGATCTGGTTAACCATTATCAAATATTTCGCCTC
ATTCCGGGATGCGATACTGCATGTGTCAAACATGTTATGGGTTTTCTCAA
GGTGGCCAAGTGCAGAGATATTCGTCACCTGATATCGCTTCGAATTGTTG
AAGCCCGCTGTGATGGGTATGATCGACTTTCTGCTCATGAGATTGGAGAG
TACATATTGAAGCATGAAAGAGGCGTTCAGCTTCAATACGACAATTCGTT
GCTTCCACCTTTCGACAATGGAGAAAGGGTAGATTCCTTCAATCCAAAAG
TTGAAAAGCATATCAGCGATTTGGTTCAGAACACAGAAAACAGTTCTCTA
CCCACTTCCAGCAGACATGTGCAGATCGAAAGAGACTTGCCGTGGAATTT
GGATCGCATCGATCAAGAGAAGAAGGAAGGGCTTGACTCCCGATTAGACC
TAACATGTTTCCCAAGGCTTGGAAAAGATGTGTTCATTTACGTTTTGGAT
TCTGGATGTCTTGCTTCTCATGAGGAATTTACTGGGAGAATTGAAGGCGC
AGCCGTCGGTCGATACACAACTTTTGAAGATAAACACGGACATGGGACTC
ACATTACGGGTACTGCAGCTGGGTCTTCCCTTGGCGTGTGTAAGGAATGT
AACATAATATGCGTGAAAACTCTTGACGAACACAACAAAGGATCCGTGAT
GGATGTTTTGAACTCAATAGATTGGGTAATCGGCCATAGACATTCCTCCG
GAGATTATCCAGGCGTGGCAGTACTCTCTCTGGGAGGAAAGATATCGACA
GACCTCTTGGACAAAGGTGTGGGAAGCTTACTGGATAATGGAATAATTCC
TGTAGTGGCTGCCGGAAACGGATATACTGATGCGTGTACATGGTCCCCTG
CCCGCTCTAAGAAGGCGATCACAGTCGCTGCTTCAACCATAGATGATTTC
ACTAGGATATCAAGCAACGGCGGACACTGCATTGATATTGCTGCCCCAGG
GGAATATATCAAGTCAGCTGCAATCAGTTCGAACAGTGGAACTATTCATA
TGTCTGGAACATCTATGTCCGCACCTTTGGTCGCTGGGACTGTTGGACTT
CTATTAGGCGAGAATCCATTCCTTGGTCTTCATGAGATAATGAAACTGCT
CACACATAATTCAGCGCCCGTGCGTGACAGGATACGAAAGCGAGACTACA
AAAACCTTCGTGTGAACCAAGAATGCTCTGTATATACAGGAGAAGATCAC
CATTACCAAAGCTCTGAATACCATGCGGCGCAGGCAGCATCTGTTTTCCC
ACTGA
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Coding sequence (CDS) from alignment at tig00000213_pilon:141964..143368+

>Ggra9999.t1 ID=Ggra9999.t1|Name=Ggra9999.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1335bp|location=Sequence derived from alignment at tig00000213_pilon:141964..143368+ (Gracilaria gracilis GNS1m male)
ATGTTCGCCTACCGGAAATCAGAGGATAATGACCTTCAGTTTCTGAGCAG
CAGGTTTATCGAACGTTCAAGTTATGGGAAGTACAGAACTCAAATTCACA
GCTCAGTTCACCTAGATGATCTGGTTAACCATTATCAAATATTTCGCCTC
ATTCCGGGATGCGATACTGCATGTGTCAAACATGTTATGGGTTTTCTCAA
GGTGGCCAAGTGCAGAGATATTCGTCACCTGATATCGCTTCGAATTGTTG
AAGCCCGCTGTGATGGGTATGATCGACTTTCTGCTCATGAGATTGGAGAG
TACATATTGAAGCATGAAAGAGGCGTTCAGCTTCAATACGACAATTCGTT
GCTTCCACCTTTCGACAATGGAGAAAGGGTAGATTCCTTCAATCCAAAAG
TTGAAAAGCATATCAGCGATTTGGTTCAGAACACAGAAAACAGTTCTCTA
CCCACTTCCAGCAGACATGTGCAGATCGAAAGAGACTTGCCGTGGAATTT
GGATCGCATCGATCAAGAGAAGAAGGAAGGGCTTGACTCCCGATTAGACC
TAACATGTTTCCCAAGGCTTGGAAAAGATGTGTTCATTTACGTTTTGGAT
TCTGGATGTCTTGCTTCTCATGAGGAATTTACTGGGAGAATTGAAGGCGC
AGCCGTCGGTCGATACACAACTTTTGAAGATAAACACGGACATGGGACTC
ACATTACGGGTACTGCAGCTGGGTCTTCCCTTGGCGTGTGTAAGGAATGT
AACATAATATGCGTGAAAACTCTTGACGAACACAACAAAGGATCCGTGAT
GGATGTTTTGAACTCAATAGATTGGGTAATCGGCCATAGACATTCCTCCG
GAGATTATCCAGGCGTGGCAGTACTCTCTCTGGGAGGAAAGATATCGACA
GACCTCTTGGACAAAGGTGTGGGAAGCTTACTGGATAATGGAATAATTCC
TGTAGTGGCTGCCGGAAACGGATATACTGATGCGTGTACATGGTCCCCTG
CCCGCTCTAAGAAGGCGATCACAGTCGCTGCTTCAACCATAGATGATTTC
ACTAGGATATCAAGCAACGGCGGACACTGCATTGATATTGCTGCCCCAGG
GGAATATATCAAGTCAGCTGCAATCAGTTCGAACAGTGGAACTATTCATA
TGTCTGGAACATCTATGTCCGCACCTTTGGTCGCTGGGACTGTTGGACTT
CTATTAGGCGAGAATCCATTCCTTGGTCTTCATGAGATAATGAAACTGCT
CACACATAATTCAGCGCCCGAGAAGATCACCATTACCAAAGCTCTGAATA
CCATGCGGCGCAGGCAGCATCTGTTTTCCCACTGA
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