Ggra10197.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10197.t1
Unique NameGgra10197.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length428
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:70509..71874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703958.1
Preferred namesrk1
PFAMsPkinase
Max annot lvl2759|Eukaryota
KEGG koko:K08286,ko:K08794
KEGG Pathwayko04921,ko04925,map04921,map04925
GOsGO:0000166,GO:0000935,GO:0003674,GO:0003824,GO:0004672,GO:0004674,GO:0004683,GO:0005488,GO:0005515,GO:0005516,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005938,GO:0006464,GO:0006468,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006979,GO:0007154,GO:0007165,GO:0007231,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009628,GO:0009987,GO:0010389,GO:0010515,GO:0010564,GO:0010948,GO:0010972,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018105,GO:0018107,GO:0018193,GO:0018209,GO:0018210,GO:0019538,GO:0023052,GO:0030428,GO:0030554,GO:0031135,GO:0031137,GO:0031138,GO:0031647,GO:0031974,GO:0031981,GO:0032092,GO:0032153,GO:0032155,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0033043,GO:0033554,GO:0034399,GO:0034599,GO:0035556,GO:0035639,GO:0036094,GO:0036211,GO:0040020,GO:0042221,GO:0042763,GO:0042764,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043412,GO:0043900,GO:0043901,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045786,GO:0045930,GO:0046999,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050821,GO:0050896,GO:0051098,GO:0051099,GO:0051128,GO:0051285,GO:0051286,GO:0051445,GO:0051716,GO:0051726,GO:0051783,GO:0060341,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071214,GO:0071470,GO:0071704,GO:0071944,GO:0072324,GO:0097159,GO:0097367,GO:0099568,GO:0099738,GO:0104004,GO:0140096,GO:1900180,GO:1900181,GO:1901265,GO:1901363,GO:1901564,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902749,GO:1902750,GO:1903827,GO:1903828,GO:2000241,GO:2000242
Evalue1.07e-68
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
EC2.7.11.17
Descriptionprotein serine/threonine kinase activity
COG categoryT
BRITEko00000,ko00001,ko01000,ko01001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10197Ggra10197Gracilaria gracilis GNS1m malegenetig00000016_pilon 70509..71874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10197.t1Ggra10197.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 70509..71874 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10197.t1.stop1Ggra10197.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 70509..70511 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10197.t1.CDS1Ggra10197.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 70509..71210 -
Ggra10197.t1.CDS2Ggra10197.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 71293..71874 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10197.t1.exon1Ggra10197.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 70509..71210 -
Ggra10197.t1.exon2Ggra10197.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 71293..71874 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10197.t1.intron1Ggra10197.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 71211..71292 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10197.t1.start1Ggra10197.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 71872..71874 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10197.t1 ID=Ggra10197.t1|Name=Ggra10197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=428bp
MFTVNYHHLGHCVDYELREAHLLTLKNYLKIHLQLPTSEKLCFFAHDAEE
FDSWKEAFTEAINWGIERFYEFRGTLGQGAFATVVRGLHFQTQDVVAIKI
LSKTLCSDQDLDFLQREVDILRALKHPNVIYMSDLFDSQENLYVVLEYLD
GGTLRSFVTSNRPLSEANVRDVMKDMLGGVRYVHSKGIVHRDIKPENLMC
TSKGFPTIIKIVDFGLSRLRGEKAEVDPNADEIGLGPDGLMTSPVGTPNF
AAPEMLSGLPYGQEVDCFACGVVMYWLFCDYCPFADSDPDRLLELIKQTE
FEFPAKEWSTVSDEAKHVIRGLLDRSPYERLTAEQALQHPWFHKDLPQVP
IRRGNTGGEETLSSISNDKRCRGGDLLLSNVVNVRKVDQTSSDMKRHTSL
QVRRTPKEPNDSELLQSTPHRCVSWYR*
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spliced messenger RNA

>Ggra10197.t1 ID=Ggra10197.t1|Name=Ggra10197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1284bp|location=Sequence derived from alignment at tig00000016_pilon:70509..71874- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCACCGTCAACTACCACCACTTGGGCCATTGTGTAGATTACGAGCT
TCGAGAAGCACATCTACTCACCCTGAAGAACTATCTGAAAATTCATTTGC
AGTTACCCACATCCGAAAAGCTTTGCTTCTTTGCTCATGATGCGGAAGAG
TTCGACAGCTGGAAAGAGGCCTTCACGGAAGCGATTAACTGGGGTATAGA
ACGATTTTATGAGTTCCGTGGCACGCTCGGACAGGGTGCATTCGCAACCG
TAGTTCGAGGTCTCCATTTCCAGACTCAGGATGTCGTCGCGATAAAGATT
CTTTCCAAAACGTTATGTAGCGATCAGGACCTTGATTTCCTTCAACGAGA
AGTTGATATTCTTAGAGCGCTGAAGCACCCAAATGTTATCTACATGTCTG
ACCTTTTCGACTCACAGGAAAACTTATACGTGGTTCTGGAATATCTGGAT
GGCGGCACTCTGCGTTCCTTCGTAACATCCAACAGACCATTATCTGAAGC
AAATGTGCGCGACGTAATGAAGGACATGCTGGGCGGTGTTCGGTACGTGC
ATTCGAAAGGAATTGTGCATAGAGACATCAAGCCAGAAAATCTCATGTGT
ACCTCCAAGGGATTCCCAACAATTATTAAGATCGTGGACTTTGGACTCAG
TCGTCTCAGGGGTGAGAAGGCTGAGGTCGATCCAAATGCAGATGAAATTG
GCCTCGGACCAGATGGGCTGATGACATCTCCAGTGGGTACGCCAAACTTC
GCGGCACCGGAGATGCTTTCGGGTCTGCCATACGGCCAAGAGGTTGACTG
CTTCGCATGTGGTGTCGTAATGTATTGGCTATTCTGCGACTATTGCCCCT
TTGCCGATTCTGACCCAGACAGACTACTGGAGCTTATCAAACAGACAGAA
TTTGAGTTCCCAGCAAAGGAGTGGTCCACGGTCTCGGATGAAGCTAAGCA
TGTAATTCGCGGGCTTCTGGATAGGAGTCCATATGAACGTCTTACAGCAG
AGCAAGCGCTGCAGCATCCTTGGTTTCATAAAGACCTTCCTCAAGTCCCC
ATCAGGAGAGGGAATACCGGCGGAGAGGAAACGTTATCTTCCATTTCTAA
TGACAAACGATGTCGGGGAGGAGATCTTCTGCTCAGTAATGTGGTGAATG
TGAGAAAAGTCGATCAAACCAGCTCCGACATGAAAAGACATACGTCTCTC
CAGGTACGGAGAACCCCAAAAGAACCCAACGATTCGGAACTCTTGCAGTC
AACGCCACATCGATGTGTTTCTTGGTATCGATAA
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protein sequence of Ggra10197.t1

>Ggra10197.t1 ID=Ggra10197.t1|Name=Ggra10197.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=428bp
MFTVNYHHLGHCVDYELREAHLLTLKNYLKIHLQLPTSEKLCFFAHDAEE
FDSWKEAFTEAINWGIERFYEFRGTLGQGAFATVVRGLHFQTQDVVAIKI
LSKTLCSDQDLDFLQREVDILRALKHPNVIYMSDLFDSQENLYVVLEYLD
GGTLRSFVTSNRPLSEANVRDVMKDMLGGVRYVHSKGIVHRDIKPENLMC
TSKGFPTIIKIVDFGLSRLRGEKAEVDPNADEIGLGPDGLMTSPVGTPNF
AAPEMLSGLPYGQEVDCFACGVVMYWLFCDYCPFADSDPDRLLELIKQTE
FEFPAKEWSTVSDEAKHVIRGLLDRSPYERLTAEQALQHPWFHKDLPQVP
IRRGNTGGEETLSSISNDKRCRGGDLLLSNVVNVRKVDQTSSDMKRHTSL
QVRRTPKEPNDSELLQSTPHRCVSWYR*
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mRNA from alignment at tig00000016_pilon:70509..71874-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10197.t1 ID=Ggra10197.t1|Name=Ggra10197.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1366bp|location=Sequence derived from alignment at tig00000016_pilon:70509..71874- (Gracilaria gracilis GNS1m male)
ATGTTCACCGTCAACTACCACCACTTGGGCCATTGTGTAGATTACGAGCT
TCGAGAAGCACATCTACTCACCCTGAAGAACTATCTGAAAATTCATTTGC
AGTTACCCACATCCGAAAAGCTTTGCTTCTTTGCTCATGATGCGGAAGAG
TTCGACAGCTGGAAAGAGGCCTTCACGGAAGCGATTAACTGGGGTATAGA
ACGATTTTATGAGTTCCGTGGCACGCTCGGACAGGGTGCATTCGCAACCG
TAGTTCGAGGTCTCCATTTCCAGACTCAGGATGTCGTCGCGATAAAGATT
CTTTCCAAAACGTTATGTAGCGATCAGGACCTTGATTTCCTTCAACGAGA
AGTTGATATTCTTAGAGCGCTGAAGCACCCAAATGTTATCTACATGTCTG
ACCTTTTCGACTCACAGGAAAACTTATACGTGGTTCTGGAATATCTGGAT
GGCGGCACTCTGCGTTCCTTCGTAACATCCAACAGACCATTATCTGAAGC
AAATGTGCGCGACGTAATGAAGGACATGCTGGGCGGTGTTCGGTACGTGC
ATTCGAAAGGAATTGTGCATAGAGACATCAAGGTACGAGTTTCCAACCGT
GACGAAAAACAGATACTTCACGAACCAAAACAATGTCTGACGTATTCTTG
TGCTCCACCTCCAGCCAGAAAATCTCATGTGTACCTCCAAGGGATTCCCA
ACAATTATTAAGATCGTGGACTTTGGACTCAGTCGTCTCAGGGGTGAGAA
GGCTGAGGTCGATCCAAATGCAGATGAAATTGGCCTCGGACCAGATGGGC
TGATGACATCTCCAGTGGGTACGCCAAACTTCGCGGCACCGGAGATGCTT
TCGGGTCTGCCATACGGCCAAGAGGTTGACTGCTTCGCATGTGGTGTCGT
AATGTATTGGCTATTCTGCGACTATTGCCCCTTTGCCGATTCTGACCCAG
ACAGACTACTGGAGCTTATCAAACAGACAGAATTTGAGTTCCCAGCAAAG
GAGTGGTCCACGGTCTCGGATGAAGCTAAGCATGTAATTCGCGGGCTTCT
GGATAGGAGTCCATATGAACGTCTTACAGCAGAGCAAGCGCTGCAGCATC
CTTGGTTTCATAAAGACCTTCCTCAAGTCCCCATCAGGAGAGGGAATACC
GGCGGAGAGGAAACGTTATCTTCCATTTCTAATGACAAACGATGTCGGGG
AGGAGATCTTCTGCTCAGTAATGTGGTGAATGTGAGAAAAGTCGATCAAA
CCAGCTCCGACATGAAAAGACATACGTCTCTCCAGGTACGGAGAACCCCA
AAAGAACCCAACGATTCGGAACTCTTGCAGTCAACGCCACATCGATGTGT
TTCTTGGTATCGATAA
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Coding sequence (CDS) from alignment at tig00000016_pilon:70509..71874-

>Ggra10197.t1 ID=Ggra10197.t1|Name=Ggra10197.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1284bp|location=Sequence derived from alignment at tig00000016_pilon:70509..71874- (Gracilaria gracilis GNS1m male)
ATGTTCACCGTCAACTACCACCACTTGGGCCATTGTGTAGATTACGAGCT
TCGAGAAGCACATCTACTCACCCTGAAGAACTATCTGAAAATTCATTTGC
AGTTACCCACATCCGAAAAGCTTTGCTTCTTTGCTCATGATGCGGAAGAG
TTCGACAGCTGGAAAGAGGCCTTCACGGAAGCGATTAACTGGGGTATAGA
ACGATTTTATGAGTTCCGTGGCACGCTCGGACAGGGTGCATTCGCAACCG
TAGTTCGAGGTCTCCATTTCCAGACTCAGGATGTCGTCGCGATAAAGATT
CTTTCCAAAACGTTATGTAGCGATCAGGACCTTGATTTCCTTCAACGAGA
AGTTGATATTCTTAGAGCGCTGAAGCACCCAAATGTTATCTACATGTCTG
ACCTTTTCGACTCACAGGAAAACTTATACGTGGTTCTGGAATATCTGGAT
GGCGGCACTCTGCGTTCCTTCGTAACATCCAACAGACCATTATCTGAAGC
AAATGTGCGCGACGTAATGAAGGACATGCTGGGCGGTGTTCGGTACGTGC
ATTCGAAAGGAATTGTGCATAGAGACATCAAGCCAGAAAATCTCATGTGT
ACCTCCAAGGGATTCCCAACAATTATTAAGATCGTGGACTTTGGACTCAG
TCGTCTCAGGGGTGAGAAGGCTGAGGTCGATCCAAATGCAGATGAAATTG
GCCTCGGACCAGATGGGCTGATGACATCTCCAGTGGGTACGCCAAACTTC
GCGGCACCGGAGATGCTTTCGGGTCTGCCATACGGCCAAGAGGTTGACTG
CTTCGCATGTGGTGTCGTAATGTATTGGCTATTCTGCGACTATTGCCCCT
TTGCCGATTCTGACCCAGACAGACTACTGGAGCTTATCAAACAGACAGAA
TTTGAGTTCCCAGCAAAGGAGTGGTCCACGGTCTCGGATGAAGCTAAGCA
TGTAATTCGCGGGCTTCTGGATAGGAGTCCATATGAACGTCTTACAGCAG
AGCAAGCGCTGCAGCATCCTTGGTTTCATAAAGACCTTCCTCAAGTCCCC
ATCAGGAGAGGGAATACCGGCGGAGAGGAAACGTTATCTTCCATTTCTAA
TGACAAACGATGTCGGGGAGGAGATCTTCTGCTCAGTAATGTGGTGAATG
TGAGAAAAGTCGATCAAACCAGCTCCGACATGAAAAGACATACGTCTCTC
CAGGTACGGAGAACCCCAAAAGAACCCAACGATTCGGAACTCTTGCAGTC
AACGCCACATCGATGTGTTTCTTGGTATCGATAA
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