Ggra7011.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra7011.t1
Unique Name	Ggra7011.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	697

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000211_pilon	contig	tig00000211_pilon:222545..224635 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005706752.1
PFAMs	ARID,RBB1NT,Tudor-knot
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K07874,ko:K11763
KEGG Pathway	ko05134,map05134
Evalue	8.33e-84
EggNOG OGs	KOG2744@1\|root,KOG2744@2759\|Eukaryota
Description	DNA binding
COG category	K
BRITE	ko00000,ko00001,ko03021,ko03036,ko04031,ko04131,ko04147

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra7011	Ggra7011	Gracilaria gracilis GNS1m male	gene	tig00000211_pilon 222545..224635 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7011.t1.start1	Ggra7011.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000211_pilon 222545..222547 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7011.t1.CDS1	Ggra7011.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000211_pilon 222545..224635 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7011.t1.exon1	Ggra7011.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000211_pilon 222545..224635 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7011.t1.stop1	Ggra7011.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000211_pilon 224633..224635 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra7011.t1	Ggra7011.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000211_pilon 222545..224635 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000211_pilon:222545..224635+
coding sequence from alignment at tig00000211_pilon:222545..224635+

mRNA sequence

>Ggra7011.t1 ID=Ggra7011.t1|Name=Ggra7011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=697bp
MSADVQAAPSTTAPSTTAPSNTAPAPAAPPDETQPPATTTTAPPTSKSPS
ASPDEPSSNVAKDSQPSTAIPVVTNVSNLPDVLTEEAMARNQRAATEIGA
KLLAKMSVGQPITGDRRTDFITDHYRFMNEIGRPFKLRRIGGAELDLYGL
YKAVLERGGLQAVICTRAFKMVAQALELPKTCTSAAFILRIEYEKLLYMY
EQKHVWNREPHQAAPLYAVDRSRRAFNPFRHQIALPPPPPSPPPPLPAPT
APAAVHPLQKPSSRPRRHAAVAASTAVAAAVSDDPYAYPIFPRRSRLTGL
DEQSLTVHEEQLLEDQVVNESAPHAIYVPNQPGERERVVAALWSPIHDDV
AWALGTLNALSFDLRNIFVAQEFPGVLDALHEVLNRHMEDIVRARPFGVE
AGMEEFDPCAPRDVSLPAMDVQAAGYFDTGPGVGVSHRPMREDHLRTSTL
QQYSNLFNIADPIAVDREQCAVVASNVLRNMSFFDRNAIFLANSMSILNI
SAVMIQTMQVPANLREALMDMWINVSPYLNASPGSAGSAVLGTCIKLLDP
FNDGAEQSRFMNCGEVLARLAASPERNEAAIVSAFDDVLPRLVDMLGGRS
RRYVNASLAALCNFSAFDWPARDRIARTPRALERLVGMLSDAELAPRAAL
TLLNLAEAPNNRSVLMYYESRLVELALNPSPAADTVASILFELTHD*

spliced messenger RNA

>Ggra7011.t1 ID=Ggra7011.t1|Name=Ggra7011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2091bp|location=Sequence derived from alignment at tig00000211_pilon:222545..224635+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGCGCCGACGTACAAGCCGCCCCATCTACAACTGCCCCATCTACAAC
TGCCCCATCAAACACCGCCCCCGCCCCTGCAGCCCCGCCCGACGAAACCC
AGCCTCCAGCCACCACAACCACCGCGCCGCCAACCTCCAAGTCCCCATCC
GCATCGCCCGATGAACCTTCTTCAAATGTCGCCAAAGACTCACAACCCTC
CACAGCCATCCCCGTGGTAACCAATGTTTCAAACCTTCCAGATGTACTCA
CGGAGGAAGCCATGGCGCGGAATCAACGAGCCGCCACTGAGATTGGCGCC
AAATTACTCGCAAAGATGTCCGTTGGACAGCCCATTACCGGCGACAGACG
CACAGATTTTATCACAGATCATTATCGCTTCATGAATGAAATTGGCCGCC
CGTTCAAGTTGCGTCGCATTGGCGGCGCTGAACTCGACCTTTACGGCCTG
TACAAGGCCGTGTTAGAACGCGGTGGTTTACAGGCTGTCATTTGTACTCG
CGCTTTCAAAATGGTGGCACAGGCGTTGGAGCTGCCCAAAACGTGCACGT
CAGCCGCCTTCATCCTTCGCATTGAGTATGAGAAGCTGCTATACATGTAT
GAGCAGAAGCACGTTTGGAACCGCGAGCCGCACCAAGCCGCACCGCTCTA
CGCCGTTGACAGATCGCGGCGTGCGTTTAACCCTTTTCGCCACCAAATAG
CTCTTCCGCCTCCACCTCCTTCACCGCCGCCACCGCTGCCTGCTCCCACC
GCTCCGGCTGCCGTTCATCCGCTGCAGAAACCGAGCAGCAGGCCTCGTCG
ACACGCGGCCGTCGCGGCCAGCACTGCCGTCGCCGCCGCCGTTTCCGACG
ACCCGTACGCGTATCCCATTTTCCCCAGACGCTCTCGACTCACTGGGCTC
GATGAACAGTCCCTTACTGTTCATGAAGAACAATTGCTTGAGGATCAGGT
GGTGAACGAAAGCGCTCCACACGCTATATACGTCCCGAATCAACCCGGTG
AACGAGAGCGAGTGGTTGCCGCTTTATGGAGCCCCATTCATGATGACGTC
GCGTGGGCGCTCGGAACTCTTAACGCGCTTTCGTTTGACCTTCGCAACAT
ATTCGTCGCTCAAGAATTCCCTGGCGTGCTCGATGCGCTTCATGAAGTAT
TGAACCGTCACATGGAGGACATAGTTCGAGCTAGACCGTTTGGTGTGGAG
GCCGGTATGGAAGAATTTGATCCGTGTGCGCCGCGTGATGTTTCTCTACC
TGCAATGGATGTTCAGGCTGCCGGTTATTTCGACACAGGGCCTGGTGTAG
GTGTTTCCCATCGTCCCATGCGAGAAGATCATTTGCGTACGTCTACTCTG
CAGCAGTATAGTAATCTGTTCAACATTGCGGATCCTATTGCGGTTGACCG
TGAACAGTGTGCAGTTGTTGCGTCCAACGTGCTGAGGAACATGAGTTTTT
TCGATCGAAATGCCATCTTTCTGGCTAACTCCATGTCCATTCTCAACATA
TCAGCCGTGATGATTCAGACCATGCAGGTTCCAGCAAATTTGCGGGAGGC
GTTGATGGACATGTGGATCAACGTATCACCATACCTGAACGCGTCTCCCG
GTTCTGCGGGAAGTGCTGTGCTGGGGACATGTATAAAACTATTGGACCCC
TTCAACGATGGAGCCGAACAGTCACGCTTTATGAACTGTGGCGAAGTTCT
GGCACGTCTAGCCGCAAGTCCCGAGCGAAATGAGGCAGCCATTGTCTCTG
CTTTTGACGATGTGTTGCCGCGTTTGGTAGACATGTTGGGAGGGAGAAGT
CGGCGGTATGTGAATGCCAGTCTGGCAGCGCTCTGCAACTTCAGTGCATT
TGACTGGCCGGCACGGGACCGAATTGCACGCACACCTCGCGCATTAGAAC
GACTAGTTGGCATGCTTTCAGACGCAGAACTGGCTCCGCGAGCGGCGTTG
ACGCTGCTGAATCTAGCGGAGGCTCCGAATAACAGGTCGGTTCTGATGTA
TTATGAGTCGCGACTGGTTGAGCTGGCACTGAACCCGTCTCCTGCGGCTG
ATACAGTGGCTTCGATTCTTTTTGAACTCACGCATGATTGA

protein sequence of Ggra7011.t1

>Ggra7011.t1 ID=Ggra7011.t1|Name=Ggra7011.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=697bp
MSADVQAAPSTTAPSTTAPSNTAPAPAAPPDETQPPATTTTAPPTSKSPS
ASPDEPSSNVAKDSQPSTAIPVVTNVSNLPDVLTEEAMARNQRAATEIGA
KLLAKMSVGQPITGDRRTDFITDHYRFMNEIGRPFKLRRIGGAELDLYGL
YKAVLERGGLQAVICTRAFKMVAQALELPKTCTSAAFILRIEYEKLLYMY
EQKHVWNREPHQAAPLYAVDRSRRAFNPFRHQIALPPPPPSPPPPLPAPT
APAAVHPLQKPSSRPRRHAAVAASTAVAAAVSDDPYAYPIFPRRSRLTGL
DEQSLTVHEEQLLEDQVVNESAPHAIYVPNQPGERERVVAALWSPIHDDV
AWALGTLNALSFDLRNIFVAQEFPGVLDALHEVLNRHMEDIVRARPFGVE
AGMEEFDPCAPRDVSLPAMDVQAAGYFDTGPGVGVSHRPMREDHLRTSTL
QQYSNLFNIADPIAVDREQCAVVASNVLRNMSFFDRNAIFLANSMSILNI
SAVMIQTMQVPANLREALMDMWINVSPYLNASPGSAGSAVLGTCIKLLDP
FNDGAEQSRFMNCGEVLARLAASPERNEAAIVSAFDDVLPRLVDMLGGRS
RRYVNASLAALCNFSAFDWPARDRIARTPRALERLVGMLSDAELAPRAAL
TLLNLAEAPNNRSVLMYYESRLVELALNPSPAADTVASILFELTHD*

mRNA from alignment at tig00000211_pilon:222545..224635+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra7011.t1 ID=Ggra7011.t1|Name=Ggra7011.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2091bp|location=Sequence derived from alignment at tig00000211_pilon:222545..224635+ (Gracilaria gracilis GNS1m male)
ATGAGCGCCGACGTACAAGCCGCCCCATCTACAACTGCCCCATCTACAAC
TGCCCCATCAAACACCGCCCCCGCCCCTGCAGCCCCGCCCGACGAAACCC
AGCCTCCAGCCACCACAACCACCGCGCCGCCAACCTCCAAGTCCCCATCC
GCATCGCCCGATGAACCTTCTTCAAATGTCGCCAAAGACTCACAACCCTC
CACAGCCATCCCCGTGGTAACCAATGTTTCAAACCTTCCAGATGTACTCA
CGGAGGAAGCCATGGCGCGGAATCAACGAGCCGCCACTGAGATTGGCGCC
AAATTACTCGCAAAGATGTCCGTTGGACAGCCCATTACCGGCGACAGACG
CACAGATTTTATCACAGATCATTATCGCTTCATGAATGAAATTGGCCGCC
CGTTCAAGTTGCGTCGCATTGGCGGCGCTGAACTCGACCTTTACGGCCTG
TACAAGGCCGTGTTAGAACGCGGTGGTTTACAGGCTGTCATTTGTACTCG
CGCTTTCAAAATGGTGGCACAGGCGTTGGAGCTGCCCAAAACGTGCACGT
CAGCCGCCTTCATCCTTCGCATTGAGTATGAGAAGCTGCTATACATGTAT
GAGCAGAAGCACGTTTGGAACCGCGAGCCGCACCAAGCCGCACCGCTCTA
CGCCGTTGACAGATCGCGGCGTGCGTTTAACCCTTTTCGCCACCAAATAG
CTCTTCCGCCTCCACCTCCTTCACCGCCGCCACCGCTGCCTGCTCCCACC
GCTCCGGCTGCCGTTCATCCGCTGCAGAAACCGAGCAGCAGGCCTCGTCG
ACACGCGGCCGTCGCGGCCAGCACTGCCGTCGCCGCCGCCGTTTCCGACG
ACCCGTACGCGTATCCCATTTTCCCCAGACGCTCTCGACTCACTGGGCTC
GATGAACAGTCCCTTACTGTTCATGAAGAACAATTGCTTGAGGATCAGGT
GGTGAACGAAAGCGCTCCACACGCTATATACGTCCCGAATCAACCCGGTG
AACGAGAGCGAGTGGTTGCCGCTTTATGGAGCCCCATTCATGATGACGTC
GCGTGGGCGCTCGGAACTCTTAACGCGCTTTCGTTTGACCTTCGCAACAT
ATTCGTCGCTCAAGAATTCCCTGGCGTGCTCGATGCGCTTCATGAAGTAT
TGAACCGTCACATGGAGGACATAGTTCGAGCTAGACCGTTTGGTGTGGAG
GCCGGTATGGAAGAATTTGATCCGTGTGCGCCGCGTGATGTTTCTCTACC
TGCAATGGATGTTCAGGCTGCCGGTTATTTCGACACAGGGCCTGGTGTAG
GTGTTTCCCATCGTCCCATGCGAGAAGATCATTTGCGTACGTCTACTCTG
CAGCAGTATAGTAATCTGTTCAACATTGCGGATCCTATTGCGGTTGACCG
TGAACAGTGTGCAGTTGTTGCGTCCAACGTGCTGAGGAACATGAGTTTTT
TCGATCGAAATGCCATCTTTCTGGCTAACTCCATGTCCATTCTCAACATA
TCAGCCGTGATGATTCAGACCATGCAGGTTCCAGCAAATTTGCGGGAGGC
GTTGATGGACATGTGGATCAACGTATCACCATACCTGAACGCGTCTCCCG
GTTCTGCGGGAAGTGCTGTGCTGGGGACATGTATAAAACTATTGGACCCC
TTCAACGATGGAGCCGAACAGTCACGCTTTATGAACTGTGGCGAAGTTCT
GGCACGTCTAGCCGCAAGTCCCGAGCGAAATGAGGCAGCCATTGTCTCTG
CTTTTGACGATGTGTTGCCGCGTTTGGTAGACATGTTGGGAGGGAGAAGT
CGGCGGTATGTGAATGCCAGTCTGGCAGCGCTCTGCAACTTCAGTGCATT
TGACTGGCCGGCACGGGACCGAATTGCACGCACACCTCGCGCATTAGAAC
GACTAGTTGGCATGCTTTCAGACGCAGAACTGGCTCCGCGAGCGGCGTTG
ACGCTGCTGAATCTAGCGGAGGCTCCGAATAACAGGTCGGTTCTGATGTA
TTATGAGTCGCGACTGGTTGAGCTGGCACTGAACCCGTCTCCTGCGGCTG
ATACAGTGGCTTCGATTCTTTTTGAACTCACGCATGATTGA

Coding sequence (CDS) from alignment at tig00000211_pilon:222545..224635+

>Ggra7011.t1 ID=Ggra7011.t1|Name=Ggra7011.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2091bp|location=Sequence derived from alignment at tig00000211_pilon:222545..224635+ (Gracilaria gracilis GNS1m male)
ATGAGCGCCGACGTACAAGCCGCCCCATCTACAACTGCCCCATCTACAAC
TGCCCCATCAAACACCGCCCCCGCCCCTGCAGCCCCGCCCGACGAAACCC
AGCCTCCAGCCACCACAACCACCGCGCCGCCAACCTCCAAGTCCCCATCC
GCATCGCCCGATGAACCTTCTTCAAATGTCGCCAAAGACTCACAACCCTC
CACAGCCATCCCCGTGGTAACCAATGTTTCAAACCTTCCAGATGTACTCA
CGGAGGAAGCCATGGCGCGGAATCAACGAGCCGCCACTGAGATTGGCGCC
AAATTACTCGCAAAGATGTCCGTTGGACAGCCCATTACCGGCGACAGACG
CACAGATTTTATCACAGATCATTATCGCTTCATGAATGAAATTGGCCGCC
CGTTCAAGTTGCGTCGCATTGGCGGCGCTGAACTCGACCTTTACGGCCTG
TACAAGGCCGTGTTAGAACGCGGTGGTTTACAGGCTGTCATTTGTACTCG
CGCTTTCAAAATGGTGGCACAGGCGTTGGAGCTGCCCAAAACGTGCACGT
CAGCCGCCTTCATCCTTCGCATTGAGTATGAGAAGCTGCTATACATGTAT
GAGCAGAAGCACGTTTGGAACCGCGAGCCGCACCAAGCCGCACCGCTCTA
CGCCGTTGACAGATCGCGGCGTGCGTTTAACCCTTTTCGCCACCAAATAG
CTCTTCCGCCTCCACCTCCTTCACCGCCGCCACCGCTGCCTGCTCCCACC
GCTCCGGCTGCCGTTCATCCGCTGCAGAAACCGAGCAGCAGGCCTCGTCG
ACACGCGGCCGTCGCGGCCAGCACTGCCGTCGCCGCCGCCGTTTCCGACG
ACCCGTACGCGTATCCCATTTTCCCCAGACGCTCTCGACTCACTGGGCTC
GATGAACAGTCCCTTACTGTTCATGAAGAACAATTGCTTGAGGATCAGGT
GGTGAACGAAAGCGCTCCACACGCTATATACGTCCCGAATCAACCCGGTG
AACGAGAGCGAGTGGTTGCCGCTTTATGGAGCCCCATTCATGATGACGTC
GCGTGGGCGCTCGGAACTCTTAACGCGCTTTCGTTTGACCTTCGCAACAT
ATTCGTCGCTCAAGAATTCCCTGGCGTGCTCGATGCGCTTCATGAAGTAT
TGAACCGTCACATGGAGGACATAGTTCGAGCTAGACCGTTTGGTGTGGAG
GCCGGTATGGAAGAATTTGATCCGTGTGCGCCGCGTGATGTTTCTCTACC
TGCAATGGATGTTCAGGCTGCCGGTTATTTCGACACAGGGCCTGGTGTAG
GTGTTTCCCATCGTCCCATGCGAGAAGATCATTTGCGTACGTCTACTCTG
CAGCAGTATAGTAATCTGTTCAACATTGCGGATCCTATTGCGGTTGACCG
TGAACAGTGTGCAGTTGTTGCGTCCAACGTGCTGAGGAACATGAGTTTTT
TCGATCGAAATGCCATCTTTCTGGCTAACTCCATGTCCATTCTCAACATA
TCAGCCGTGATGATTCAGACCATGCAGGTTCCAGCAAATTTGCGGGAGGC
GTTGATGGACATGTGGATCAACGTATCACCATACCTGAACGCGTCTCCCG
GTTCTGCGGGAAGTGCTGTGCTGGGGACATGTATAAAACTATTGGACCCC
TTCAACGATGGAGCCGAACAGTCACGCTTTATGAACTGTGGCGAAGTTCT
GGCACGTCTAGCCGCAAGTCCCGAGCGAAATGAGGCAGCCATTGTCTCTG
CTTTTGACGATGTGTTGCCGCGTTTGGTAGACATGTTGGGAGGGAGAAGT
CGGCGGTATGTGAATGCCAGTCTGGCAGCGCTCTGCAACTTCAGTGCATT
TGACTGGCCGGCACGGGACCGAATTGCACGCACACCTCGCGCATTAGAAC
GACTAGTTGGCATGCTTTCAGACGCAGAACTGGCTCCGCGAGCGGCGTTG
ACGCTGCTGAATCTAGCGGAGGCTCCGAATAACAGGTCGGTTCTGATGTA
TTATGAGTCGCGACTGGTTGAGCTGGCACTGAACCCGTCTCCTGCGGCTG
ATACAGTGGCTTCGATTCTTTTTGAACTCACGCATGATTGA