Ggra7002.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra7002.t1
Unique NameGgra7002.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length226
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000211_piloncontigtig00000211_pilon:163507..164184 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra7002Ggra7002Gracilaria gracilis GNS1m malegenetig00000211_pilon 163507..164184 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7002.t1.start1Ggra7002.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000211_pilon 163507..163509 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7002.t1.CDS1Ggra7002.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000211_pilon 163507..164184 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7002.t1.exon1Ggra7002.t1.exon1Gracilaria gracilis GNS1m maleexontig00000211_pilon 163507..164184 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7002.t1.stop1Ggra7002.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000211_pilon 164182..164184 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra7002.t1Ggra7002.t1Gracilaria gracilis GNS1m malepolypeptidetig00000211_pilon 163507..164184 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra7002.t1 ID=Ggra7002.t1|Name=Ggra7002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=226bp
MHRINTVSYHDVTHRVHEEDICIDREDISQKACHRGRVFNVCRAYVGEED
ERVVVKWVREGHDCEKDHYWEAIKQAKETAKIVRAFMSETDTHGWKVKVL
IPKNAKGWLRREGHHTHVLVERYLRDYEVFYKKSDDIHLWHGHMCFMVME
ALMHFSIRHSQRESMIANLKGFVDREEKIIYLSGPSVLDHKLFGDGDGVI
SAFLREHNCSRMCRGSNVWRRHLHC*
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spliced messenger RNA

>Ggra7002.t1 ID=Ggra7002.t1|Name=Ggra7002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000211_pilon:163507..164184+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACAGAATCAATACGGTGTCATATCACGATGTAACGCACCGTGTACA
TGAAGAGGATATCTGCATCGATCGAGAAGACATAAGCCAAAAGGCATGTC
ATCGTGGTAGGGTATTCAATGTGTGTCGAGCATACGTTGGTGAGGAAGAC
GAACGAGTGGTCGTGAAGTGGGTGCGTGAAGGTCATGATTGTGAGAAGGA
CCATTACTGGGAAGCCATTAAACAGGCGAAAGAGACTGCCAAAATCGTTC
GAGCATTCATGAGCGAGACTGACACGCATGGATGGAAGGTGAAAGTCTTG
ATTCCCAAGAACGCCAAAGGATGGCTTCGGCGCGAAGGACATCACACGCA
CGTTCTTGTAGAGCGATATCTGAGAGATTACGAAGTGTTCTACAAGAAGT
CTGACGATATTCATCTTTGGCATGGCCATATGTGTTTCATGGTTATGGAA
GCTTTAATGCACTTTAGTATTCGTCACAGCCAAAGGGAAAGCATGATTGC
AAATCTGAAGGGGTTTGTTGACAGGGAGGAGAAGATAATCTATTTATCCG
GACCATCTGTGCTTGATCATAAGTTGTTTGGAGACGGAGATGGAGTTATT
TCAGCATTTCTGAGGGAGCACAACTGCTCCAGGATGTGCAGAGGATCTAA
TGTGTGGAGAAGGCATCTGCATTGCTAG
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protein sequence of Ggra7002.t1

>Ggra7002.t1 ID=Ggra7002.t1|Name=Ggra7002.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=226bp
MHRINTVSYHDVTHRVHEEDICIDREDISQKACHRGRVFNVCRAYVGEED
ERVVVKWVREGHDCEKDHYWEAIKQAKETAKIVRAFMSETDTHGWKVKVL
IPKNAKGWLRREGHHTHVLVERYLRDYEVFYKKSDDIHLWHGHMCFMVME
ALMHFSIRHSQRESMIANLKGFVDREEKIIYLSGPSVLDHKLFGDGDGVI
SAFLREHNCSRMCRGSNVWRRHLHC*
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mRNA from alignment at tig00000211_pilon:163507..164184+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra7002.t1 ID=Ggra7002.t1|Name=Ggra7002.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=678bp|location=Sequence derived from alignment at tig00000211_pilon:163507..164184+ (Gracilaria gracilis GNS1m male)
ATGCACAGAATCAATACGGTGTCATATCACGATGTAACGCACCGTGTACA
TGAAGAGGATATCTGCATCGATCGAGAAGACATAAGCCAAAAGGCATGTC
ATCGTGGTAGGGTATTCAATGTGTGTCGAGCATACGTTGGTGAGGAAGAC
GAACGAGTGGTCGTGAAGTGGGTGCGTGAAGGTCATGATTGTGAGAAGGA
CCATTACTGGGAAGCCATTAAACAGGCGAAAGAGACTGCCAAAATCGTTC
GAGCATTCATGAGCGAGACTGACACGCATGGATGGAAGGTGAAAGTCTTG
ATTCCCAAGAACGCCAAAGGATGGCTTCGGCGCGAAGGACATCACACGCA
CGTTCTTGTAGAGCGATATCTGAGAGATTACGAAGTGTTCTACAAGAAGT
CTGACGATATTCATCTTTGGCATGGCCATATGTGTTTCATGGTTATGGAA
GCTTTAATGCACTTTAGTATTCGTCACAGCCAAAGGGAAAGCATGATTGC
AAATCTGAAGGGGTTTGTTGACAGGGAGGAGAAGATAATCTATTTATCCG
GACCATCTGTGCTTGATCATAAGTTGTTTGGAGACGGAGATGGAGTTATT
TCAGCATTTCTGAGGGAGCACAACTGCTCCAGGATGTGCAGAGGATCTAA
TGTGTGGAGAAGGCATCTGCATTGCTAG
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Coding sequence (CDS) from alignment at tig00000211_pilon:163507..164184+

>Ggra7002.t1 ID=Ggra7002.t1|Name=Ggra7002.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=678bp|location=Sequence derived from alignment at tig00000211_pilon:163507..164184+ (Gracilaria gracilis GNS1m male)
ATGCACAGAATCAATACGGTGTCATATCACGATGTAACGCACCGTGTACA
TGAAGAGGATATCTGCATCGATCGAGAAGACATAAGCCAAAAGGCATGTC
ATCGTGGTAGGGTATTCAATGTGTGTCGAGCATACGTTGGTGAGGAAGAC
GAACGAGTGGTCGTGAAGTGGGTGCGTGAAGGTCATGATTGTGAGAAGGA
CCATTACTGGGAAGCCATTAAACAGGCGAAAGAGACTGCCAAAATCGTTC
GAGCATTCATGAGCGAGACTGACACGCATGGATGGAAGGTGAAAGTCTTG
ATTCCCAAGAACGCCAAAGGATGGCTTCGGCGCGAAGGACATCACACGCA
CGTTCTTGTAGAGCGATATCTGAGAGATTACGAAGTGTTCTACAAGAAGT
CTGACGATATTCATCTTTGGCATGGCCATATGTGTTTCATGGTTATGGAA
GCTTTAATGCACTTTAGTATTCGTCACAGCCAAAGGGAAAGCATGATTGC
AAATCTGAAGGGGTTTGTTGACAGGGAGGAGAAGATAATCTATTTATCCG
GACCATCTGTGCTTGATCATAAGTTGTTTGGAGACGGAGATGGAGTTATT
TCAGCATTTCTGAGGGAGCACAACTGCTCCAGGATGTGCAGAGGATCTAA
TGTGTGGAGAAGGCATCTGCATTGCTAG
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