Ggra330.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra330.t1
Unique NameGgra330.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000209_piloncontigtig00000209_pilon:116290..120305 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra330Ggra330Gracilaria gracilis GNS1m malegenetig00000209_pilon 116290..120305 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra330.t1Ggra330.t1Gracilaria gracilis GNS1m malepolypeptidetig00000209_pilon 116290..120305 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra330.t1.stop1Ggra330.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000209_pilon 116290..116292 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra330.t1.CDS1Ggra330.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000209_pilon 116290..116576 -
Ggra330.t1.CDS2Ggra330.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000209_pilon 118899..119440 -
Ggra330.t1.CDS3Ggra330.t1.CDS3Gracilaria gracilis GNS1m maleCDStig00000209_pilon 119539..119716 -
Ggra330.t1.CDS4Ggra330.t1.CDS4Gracilaria gracilis GNS1m maleCDStig00000209_pilon 119783..120305 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra330.t1.exon1Ggra330.t1.exon1Gracilaria gracilis GNS1m maleexontig00000209_pilon 116290..116576 -
Ggra330.t1.exon2Ggra330.t1.exon2Gracilaria gracilis GNS1m maleexontig00000209_pilon 118899..119440 -
Ggra330.t1.exon3Ggra330.t1.exon3Gracilaria gracilis GNS1m maleexontig00000209_pilon 119539..119716 -
Ggra330.t1.exon4Ggra330.t1.exon4Gracilaria gracilis GNS1m maleexontig00000209_pilon 119783..120305 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra330.t1.intron1Ggra330.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000209_pilon 116577..118898 -
Ggra330.t1.intron2Ggra330.t1.intron2Gracilaria gracilis GNS1m maleintrontig00000209_pilon 119441..119538 -
Ggra330.t1.intron3Ggra330.t1.intron3Gracilaria gracilis GNS1m maleintrontig00000209_pilon 119717..119782 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra330.t1.start1Ggra330.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000209_pilon 120303..120305 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra330.t1 ID=Ggra330.t1|Name=Ggra330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=510bp
MRERLVVKQELLQNAVEKGECLPFGAKGVEWRKEGEEEKGMYGYDGYKES
LGEFISELPVKFSYVKEMRKFDVNMLKWLTMILYLGGMSLEMEEKGRRGR
SWGGNKREVEERSKSRLKCGPDHMSSGEGDVASREKIGNVRRGGEAVKVL
CSQLGMKRGRYAGEWSKGVENGCGRNRMVRKVGKLMDMWMSLLCREGLRF
LVNELNEEWEKMCLGGDRGNIIGEAEEEGKSERRYVEECVTFMGYRMEIV
RTVIGRWAEGNEGKCDNDMFVGIGGEEMKNMRIDVELSEEVKLGLRDCRE
GGRKRGVGGRGFQCRLIWKLQNELERKLLEGEERWGEGNEKFLEMSISTI
RLMVLSFHAVRVEVGGCGTLGKLELLKRAMSGAASVLGVVEGVDVVMGER
KERGKRKMWKEIGLDKAKAMERLRSAVEVRNDVNGMVVLSVLYARGSVSE
IGADMETSRMMLRRAAEQGKQLEIDHWLLVRLWKGMRDGVDGFEQEVELA
NEIERYCVK*
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spliced messenger RNA

>Ggra330.t1 ID=Ggra330.t1|Name=Ggra330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000209_pilon:116290..120305- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGGAGAGGCTTGTTGTGAAACAAGAGCTGCTGCAAAATGCGGTGGA
GAAGGGAGAATGTCTTCCGTTCGGTGCAAAAGGTGTGGAGTGGAGGAAGG
AAGGGGAGGAAGAGAAGGGGATGTATGGGTACGATGGGTACAAAGAGAGT
CTGGGAGAATTTATATCGGAATTACCTGTGAAATTTTCGTATGTGAAGGA
GATGCGAAAGTTTGATGTGAACATGCTGAAATGGCTAACGATGATTCTAT
ACTTGGGAGGTATGAGTTTGGAGATGGAAGAGAAAGGGAGGAGAGGTAGA
AGTTGGGGTGGAAACAAAAGAGAAGTGGAAGAAAGGAGTAAGAGCCGGTT
GAAGTGTGGTCCCGACCACATGAGCAGTGGTGAAGGTGATGTTGCGAGCA
GGGAGAAGATAGGGAATGTGAGGAGAGGTGGGGAAGCAGTAAAGGTGTTG
TGCTCACAACTTGGTATGAAGCGGGGAAGATACGCTGGGGAGTGGAGCAA
GGGTGTGGAGAATGGGTGTGGAAGGAACCGGATGGTGCGCAAGGTGGGGA
AGCTAATGGATATGTGGATGAGTCTTTTGTGTCGAGAAGGACTTAGATTC
TTGGTGAATGAATTGAACGAGGAGTGGGAGAAGATGTGTTTAGGTGGAGA
CCGTGGGAATATTATCGGTGAAGCAGAAGAAGAAGGAAAGAGTGAGAGAA
GGTATGTGGAGGAATGTGTGACGTTCATGGGGTACCGAATGGAGATTGTA
CGAACTGTGATTGGTCGATGGGCGGAAGGGAATGAGGGAAAGTGCGACAA
TGATATGTTTGTTGGGATAGGTGGGGAAGAGATGAAAAATATGAGGATTG
ATGTGGAGTTGAGCGAAGAGGTGAAATTGGGTTTGAGGGATTGTAGAGAG
GGTGGTAGGAAGAGAGGTGTAGGAGGTCGTGGGTTTCAGTGTCGGTTAAT
ATGGAAGTTGCAGAACGAGTTGGAAAGGAAGTTGCTTGAGGGAGAAGAAA
GATGGGGAGAAGGGAACGAAAAGTTTTTGGAGATGAGTATTTCGACCATA
AGGCTGATGGTGCTATCATTCCATGCGGTGAGAGTTGAGGTGGGAGGATG
TGGGACGTTGGGGAAGTTAGAGTTGTTGAAGAGAGCAATGAGTGGTGCTG
CATCAGTATTGGGTGTAGTAGAGGGGGTGGATGTTGTTATGGGAGAGAGG
AAAGAGAGGGGGAAGAGAAAGATGTGGAAGGAAATAGGGTTAGACAAGGC
AAAAGCAATGGAGAGGCTGCGTAGCGCTGTTGAGGTCAGAAATGACGTGA
ACGGCATGGTGGTTCTGTCCGTGCTGTACGCCAGAGGCAGCGTGAGTGAG
ATCGGAGCTGATATGGAGACGTCGAGGATGATGTTGAGACGCGCCGCCGA
ACAGGGAAAGCAGTTAGAGATAGACCACTGGCTTTTGGTGAGGCTGTGGA
AGGGGATGCGAGACGGGGTAGATGGTTTTGAGCAAGAGGTTGAGTTGGCA
AACGAGATTGAACGATACTGCGTGAAGTGA
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protein sequence of Ggra330.t1

>Ggra330.t1 ID=Ggra330.t1|Name=Ggra330.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=510bp
MRERLVVKQELLQNAVEKGECLPFGAKGVEWRKEGEEEKGMYGYDGYKES
LGEFISELPVKFSYVKEMRKFDVNMLKWLTMILYLGGMSLEMEEKGRRGR
SWGGNKREVEERSKSRLKCGPDHMSSGEGDVASREKIGNVRRGGEAVKVL
CSQLGMKRGRYAGEWSKGVENGCGRNRMVRKVGKLMDMWMSLLCREGLRF
LVNELNEEWEKMCLGGDRGNIIGEAEEEGKSERRYVEECVTFMGYRMEIV
RTVIGRWAEGNEGKCDNDMFVGIGGEEMKNMRIDVELSEEVKLGLRDCRE
GGRKRGVGGRGFQCRLIWKLQNELERKLLEGEERWGEGNEKFLEMSISTI
RLMVLSFHAVRVEVGGCGTLGKLELLKRAMSGAASVLGVVEGVDVVMGER
KERGKRKMWKEIGLDKAKAMERLRSAVEVRNDVNGMVVLSVLYARGSVSE
IGADMETSRMMLRRAAEQGKQLEIDHWLLVRLWKGMRDGVDGFEQEVELA
NEIERYCVK*
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mRNA from alignment at tig00000209_pilon:116290..120305-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra330.t1 ID=Ggra330.t1|Name=Ggra330.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=4016bp|location=Sequence derived from alignment at tig00000209_pilon:116290..120305- (Gracilaria gracilis GNS1m male)
ATGAGGGAGAGGCTTGTTGTGAAACAAGAGCTGCTGCAAAATGCGGTGGA
GAAGGGAGAATGTCTTCCGTTCGGTGCAAAAGGTGTGGAGTGGAGGAAGG
AAGGGGAGGAAGAGAAGGGGATGTATGGGTACGATGGGTACAAAGAGAGT
CTGGGAGAATTTATATCGGAATTACCTGTGAAATTTTCGTATGTGAAGGA
GATGCGAAAGTTTGATGTGAACATGCTGAAATGGCTAACGATGATTCTAT
ACTTGGGAGGTATGAGTTTGGAGATGGAAGAGAAAGGGAGGAGAGGTAGA
AGTTGGGGTGGAAACAAAAGAGAAGTGGAAGAAAGGAGTAAGAGCCGGTT
GAAGTGTGGTCCCGACCACATGAGCAGTGGTGAAGGTGATGTTGCGAGCA
GGGAGAAGATAGGGAATGTGAGGAGAGGTGGGGAAGCAGTAAAGGTGTTG
TGCTCACAACTTGGTATGAAGCGGGGAAGATACGCTGGGGAGTGGAGCAA
GGGTGTGGAGAATGGGTGTGGAAGTGAGTGGGGAGTTCTGGTGAGCAGCA
TTTCGATGATAGGGAATGTGATAGCGGTTCTTTGAGAAGGGAACCGGATG
GTGCGCAAGGTGGGGAAGCTAATGGATATGTGGATGAGTCTTTTGTGTCG
AGAAGGACTTAGATTCTTGGTGAATGAATTGAACGAGGAGTGGGAGAAGA
TGTGTTTAGGTGGAGACCGTGGGAATATTATCGGTGAAGCAGAAGAAGAA
GGAAAGAGTGAGAGAAGGTAGGAATGCGAACATTGGGTATGCGTGAGGTT
CAAAAGGAGGTTGAAGAACGACGGTTGGAAGCGAGAGTTGAAAGTGCAGA
GGGGAGTCGATGTAGGTATGTGGAGGAATGTGTGACGTTCATGGGGTACC
GAATGGAGATTGTACGAACTGTGATTGGTCGATGGGCGGAAGGGAATGAG
GGAAAGTGCGACAATGATATGTTTGTTGGGATAGGTGGGGAAGAGATGAA
AAATATGAGGATTGATGTGGAGTTGAGCGAAGAGGTGAAATTGGGTTTGA
GGGATTGTAGAGAGGGTGGTAGGAAGAGAGGTGTAGGAGGTCGTGGGTTT
CAGTGTCGGTTAATATGGAAGTTGCAGAACGAGTTGGAAAGGAAGTTGCT
TGAGGGAGAAGAAAGATGGGGAGAAGGGAACGAAAAGTTTTTGGAGATGA
GTATTTCGACCATAAGGCTGATGGTGCTATCATTCCATGCGGTGAGAGTT
GAGGTGGGAGGATGTGGGACGTTGGGGAAGTTAGAGTTGTTGAAGAGAGC
AATGAGTGGTGCTGCATCAGTATTGGGTGTAGTAGAGGGGGTGGATGTTG
TTATGGGAGAGAGGAAAGAGAGGGGGAAGAGAAAGATGTGGAAGGAAATA
GGGTTAGGTGTGTGAGAGGGTGTGATGAATGGAAGAGGATTGAGATATCG
ACAATGTGTGGACCACAAAGAATGGGGATAGGAGGGGAGATGGGTGGTGG
GGGTTAAGTATTATTGAAGTTACTGAATGTAGACGGTAAGGAGTTCAAGT
GTGAATGGTGGCGAGATGCGTTTATGAGACGTTCGGAGGGGATGACAGAG
TGGAAGACTGAGGTTGGGATGAGTGGAGTAGGAGTGGAGCGGTGGGAGAT
AAGGAGAGGGCAAGGGGAAGGGATTATGAGGGAGGTAGAAACATGGGCAA
AAAGAAGGTAAGAAGTTGGAGTGAATGGGGGCCATTCTGGACGGAGTTTT
GTCAATTTAAACTGGAAAACAAGAAGTTGTTAGAACAACCGATTTGGAAT
GGCATGAAGATCGGGAATTTTGTGGACCACCAAAGAAATGTCATTTCGAG
AATAGCACATCAAGGACCGCAGCGGATGAAGAATGTGGGATATGATGAAG
TGGATGATTGGATGATGAAACATTATTGTGATACCGTGAGGGCAGGACTA
GAGTATTAAGTAGTGGATGGAAGAAATGAAGAAAGTGAGAAGAGTGAAAA
GAAGATGGAGGAGGAAAAAGGAGGGAAGAGGGGAAGGAGAAGGGCAGAAG
AAGTGGATGTTGGAATTTTTGAAGAGTTGGTTCGGTATCGAGCTGCTGCA
CTGAACGATGAAGACGTTGAGGGATTTGGACGGTGTATAAGAATATTATG
CACGTCAGCAGGAGAGAAAAGACGAGTTTCGGAAGGGTTGAGCTTACTTT
GTAGTCTTGTTGGAGCAATGCTGCGGGGCTCGGGGCATGGAGTGAAAGTT
AGAGCGGGAAGGGAAAGAGAAATAGGGGAGGTGACACTTCCGGAATGTTT
GAGAGTAGTGTAAATGGTAGAAAGTAATGAAGGACATGAGGAACAATTGC
TGCAAGCTCTATTGACATGTTTTGCCGTGGACGCGTGTAATCATGAAAAG
AAGGTGATGAGAATGATGCAACGAATGATTTTGATGAACAGTGGGACGAA
AAGAGGACAGGTTTGCCATTGTTACTTGCGACACGGAATGCAGTGCTTGG
GTCGTTGAAGGAAGAATTCCGAGAAAGCAAGAAGAAGAGAACGCGAATGG
GTGCGAACGTCATTGAGCTTTTTATAAGGCCTATAGAGGATTCTGGAGAT
TTAGAAAGGAAGAGAAGAGGCAGAGAGATGGGAGTATTGAAGTGGTTGGG
AACAAAGAGAAAGGATGTGTTAAAGAATCCCGAAATCGAAAGAGCGAGGT
TGAGGTATAGAAGAGCGAATGATGGGGTAGTAATAGGTATTTATGCCGAC
GCTCTGATGGACTTGGGTTTGGTGCTCCAGGATGGGGCAAAAGGAATACC
TAAGGATGGAACAAGAGCTATGAAGCTGTTCAAACGCCCAATGGAAGAAG
GGAATGACACTGGCGCAATGACCAATCTTGGTCGTTTATTCCAAGACGGG
GCAGATGGCGTGCCAAAGAATGCAGTACGAGCTAAGGAGCTGTACGAACT
CGCAATCGAAGAAGGAGATGATATCCATGCAATGTGCAGTCTTGGTCGTT
TATTGGTAGAGGGCTGCAGAGGGCGAGCCAAAAAATGCAAGACGAGCTAG
GGAGCGTTACGAACGCGCAATTAAAGAAGAGAATGACACTGCTGCTATGA
GTAATCTTGGGCTCTTGGTCGTTTATTGAAGGAGGGTGCTGACGGCGTGT
CAAAGAATGCAAGACGAGCGAAGGAGCTGTTCGAACTCGCAATCGAAGAA
AGGAATAACACCGATGCGATGTATAATCTTGTTTTCTTGTTGGAAAAGGG
TGCAGACGGCGTGCAAGTCAATGCAGGACGAGTTAAAAAGCTGTACGAAC
GCGCAATTGAAGAAGGGAGTCACATCTATGCAGTGAGCAATCTTGGTTAC
TTGTTGCAACAGGGAGCAGACGGCGTGCCAAATAATGCACGACGAGCGAA
GAAACTGTACGAACGCTCAATCGAAGAAGGAAACAACACTGATGCGATGT
ACAACCTTGGTTGTTTATTGGAAGAGGGTGCTGACGGCGCTCTAAAGAAT
GCAAGAAGAGCTAAGGAGCTGTTCCAACGCGCAATCGAAGAAGAAGGTAA
CAAGGGTGCCATGCGCAGGCTCGCAGAACTTTCACGAAGTAGAGCGGAAG
GTGTGCCAGGAGATATACCGCGCTCTATAGCTTTGTACGAGAGTGTTCTA
CGAATATACGCTCCAGTCTGGGCCATGGATGGATAGCTTTAAACGTTGCT
GGACGTTTTGGATGATTGTGCGAGTTTAGACAAGGCAAAAGCAATGGAGA
GGCTGCGTAGCGCTGTTGAGGTCAGAAATGACGTGAACGGCATGGTGGTT
CTGTCCGTGCTGTACGCCAGAGGCAGCGTGAGTGAGATCGGAGCTGATAT
GGAGACGTCGAGGATGATGTTGAGACGCGCCGCCGAACAGGGAAAGCAGT
TAGAGATAGACCACTGGCTTTTGGTGAGGCTGTGGAAGGGGATGCGAGAC
GGGGTAGATGGTTTTGAGCAAGAGGTTGAGTTGGCAAACGAGATTGAACG
ATACTGCGTGAAGTGA
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Coding sequence (CDS) from alignment at tig00000209_pilon:116290..120305-

>Ggra330.t1 ID=Ggra330.t1|Name=Ggra330.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000209_pilon:116290..120305- (Gracilaria gracilis GNS1m male)
ATGAGGGAGAGGCTTGTTGTGAAACAAGAGCTGCTGCAAAATGCGGTGGA
GAAGGGAGAATGTCTTCCGTTCGGTGCAAAAGGTGTGGAGTGGAGGAAGG
AAGGGGAGGAAGAGAAGGGGATGTATGGGTACGATGGGTACAAAGAGAGT
CTGGGAGAATTTATATCGGAATTACCTGTGAAATTTTCGTATGTGAAGGA
GATGCGAAAGTTTGATGTGAACATGCTGAAATGGCTAACGATGATTCTAT
ACTTGGGAGGTATGAGTTTGGAGATGGAAGAGAAAGGGAGGAGAGGTAGA
AGTTGGGGTGGAAACAAAAGAGAAGTGGAAGAAAGGAGTAAGAGCCGGTT
GAAGTGTGGTCCCGACCACATGAGCAGTGGTGAAGGTGATGTTGCGAGCA
GGGAGAAGATAGGGAATGTGAGGAGAGGTGGGGAAGCAGTAAAGGTGTTG
TGCTCACAACTTGGTATGAAGCGGGGAAGATACGCTGGGGAGTGGAGCAA
GGGTGTGGAGAATGGGTGTGGAAGGAACCGGATGGTGCGCAAGGTGGGGA
AGCTAATGGATATGTGGATGAGTCTTTTGTGTCGAGAAGGACTTAGATTC
TTGGTGAATGAATTGAACGAGGAGTGGGAGAAGATGTGTTTAGGTGGAGA
CCGTGGGAATATTATCGGTGAAGCAGAAGAAGAAGGAAAGAGTGAGAGAA
GGTATGTGGAGGAATGTGTGACGTTCATGGGGTACCGAATGGAGATTGTA
CGAACTGTGATTGGTCGATGGGCGGAAGGGAATGAGGGAAAGTGCGACAA
TGATATGTTTGTTGGGATAGGTGGGGAAGAGATGAAAAATATGAGGATTG
ATGTGGAGTTGAGCGAAGAGGTGAAATTGGGTTTGAGGGATTGTAGAGAG
GGTGGTAGGAAGAGAGGTGTAGGAGGTCGTGGGTTTCAGTGTCGGTTAAT
ATGGAAGTTGCAGAACGAGTTGGAAAGGAAGTTGCTTGAGGGAGAAGAAA
GATGGGGAGAAGGGAACGAAAAGTTTTTGGAGATGAGTATTTCGACCATA
AGGCTGATGGTGCTATCATTCCATGCGGTGAGAGTTGAGGTGGGAGGATG
TGGGACGTTGGGGAAGTTAGAGTTGTTGAAGAGAGCAATGAGTGGTGCTG
CATCAGTATTGGGTGTAGTAGAGGGGGTGGATGTTGTTATGGGAGAGAGG
AAAGAGAGGGGGAAGAGAAAGATGTGGAAGGAAATAGGGTTAGACAAGGC
AAAAGCAATGGAGAGGCTGCGTAGCGCTGTTGAGGTCAGAAATGACGTGA
ACGGCATGGTGGTTCTGTCCGTGCTGTACGCCAGAGGCAGCGTGAGTGAG
ATCGGAGCTGATATGGAGACGTCGAGGATGATGTTGAGACGCGCCGCCGA
ACAGGGAAAGCAGTTAGAGATAGACCACTGGCTTTTGGTGAGGCTGTGGA
AGGGGATGCGAGACGGGGTAGATGGTTTTGAGCAAGAGGTTGAGTTGGCA
AACGAGATTGAACGATACTGCGTGAAGTGA
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