Ggra10350.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10350.t1
Unique NameGgra10350.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length361
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:1608602..1609684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog756067.MicvaDRAFT_4342
PFAMsDala_Dala_lig_C
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00064,RC00141
KEGG koko:K01921
KEGG ReactionR01150
KEGG Pathwayko00473,ko00550,ko01100,ko01502,map00473,map00550,map01100,map01502
Evalue3.17e-113
EggNOG OGsCOG1181@1|root,COG1181@2|Bacteria,1G3G5@1117|Cyanobacteria,1HDRI@1150|Oscillatoriales
EC6.3.2.4
DescriptionBelongs to the D-alanine--D-alanine ligase family
COG categoryF
BRITEko00000,ko00001,ko01000,ko01011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10350Ggra10350Gracilaria gracilis GNS1m malegenetig00000016_pilon 1608602..1609684 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10350.t1.stop1Ggra10350.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 1608602..1608604 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10350.t1.CDS1Ggra10350.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 1608602..1609684 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10350.t1.exon1Ggra10350.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 1608602..1609684 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10350.t1.start1Ggra10350.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 1609682..1609684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10350.t1Ggra10350.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 1608602..1609684 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10350.t1 ID=Ggra10350.t1|Name=Ggra10350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=361bp
MRIAVIYSGCNQQKGAVLRSTSNPRGWKSYENVANDIAQSLSRLGFQNVF
VFPEDMQLSARLRDHSIDLGWLNTGGVQGFGSVAHAASMLEMLGIPYIGH
DPLNSLVLDNKHMFKQQLIHNRIPTSPFVHYGSDPNALPPTRTSQFKNAF
GDYGGPFVVKPVSGRASNNVSFVDDYHQLDEVVISGCHNTGNLMMIEAFL
PGREFCVAVSGPVVSQQRALQDLGNPFVFSAVERVLDNGEHIFTSMDRRQ
ITRDRVRLLDPDKDHLVIEKLHRLARDVQVVFSLRSIVRLDVRADANENL
FVLEANPKPDLTRDNGSRTSIISSGLSQSGMDYDDLIFSLIANRLNFLFN
SRKTAVKHLI*
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spliced messenger RNA

>Ggra10350.t1 ID=Ggra10350.t1|Name=Ggra10350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000016_pilon:1608602..1609684- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCATTGCCGTCATCTACAGCGGATGTAATCAACAAAAAGGAGCTGT
CCTCCGATCTACCTCAAACCCACGTGGTTGGAAGAGCTACGAGAACGTTG
CGAATGACATTGCTCAGTCTCTCTCGCGACTGGGCTTTCAGAATGTTTTT
GTCTTCCCGGAGGATATGCAACTATCTGCTCGTCTTCGTGATCATTCCAT
TGATCTAGGGTGGCTTAATACAGGCGGTGTACAGGGCTTTGGATCTGTTG
CACATGCCGCTTCAATGCTTGAAATGCTTGGGATTCCGTACATTGGCCAT
GACCCTCTCAACTCTCTTGTCTTGGACAACAAGCACATGTTTAAGCAGCA
ACTCATCCACAATCGCATCCCTACTTCACCATTTGTTCACTATGGCTCCG
ATCCAAACGCCCTACCTCCCACGCGCACCAGCCAGTTCAAGAATGCCTTC
GGAGACTATGGTGGTCCTTTTGTGGTGAAGCCAGTTTCTGGCCGCGCATC
CAACAACGTCTCATTTGTTGATGACTATCACCAATTGGATGAAGTTGTCA
TATCTGGATGTCACAACACTGGAAACTTGATGATGATTGAGGCTTTTCTC
CCAGGTCGCGAGTTCTGTGTGGCCGTAAGTGGTCCAGTGGTTTCTCAACA
ACGCGCTTTGCAAGACCTTGGCAATCCCTTTGTATTCTCAGCAGTAGAAC
GGGTTTTGGACAATGGTGAGCACATTTTCACTTCTATGGATCGAAGACAG
ATCACAAGAGATCGTGTTCGCCTTCTAGATCCGGACAAAGACCACCTCGT
GATCGAAAAACTACATCGTTTAGCCCGCGACGTGCAAGTGGTCTTTTCTT
TGAGGTCGATTGTCAGACTGGATGTTAGAGCAGATGCGAATGAGAATTTG
TTTGTACTTGAAGCAAATCCAAAGCCAGACTTAACGAGAGACAATGGATC
ACGAACCAGCATCATCAGCAGTGGGCTTAGCCAGAGTGGAATGGACTACG
ATGATTTGATCTTCTCTCTCATCGCCAATCGTTTGAATTTCTTGTTCAAC
AGTCGAAAGACGGCGGTTAAACATCTAATTTAG
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protein sequence of Ggra10350.t1

>Ggra10350.t1 ID=Ggra10350.t1|Name=Ggra10350.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=361bp
MRIAVIYSGCNQQKGAVLRSTSNPRGWKSYENVANDIAQSLSRLGFQNVF
VFPEDMQLSARLRDHSIDLGWLNTGGVQGFGSVAHAASMLEMLGIPYIGH
DPLNSLVLDNKHMFKQQLIHNRIPTSPFVHYGSDPNALPPTRTSQFKNAF
GDYGGPFVVKPVSGRASNNVSFVDDYHQLDEVVISGCHNTGNLMMIEAFL
PGREFCVAVSGPVVSQQRALQDLGNPFVFSAVERVLDNGEHIFTSMDRRQ
ITRDRVRLLDPDKDHLVIEKLHRLARDVQVVFSLRSIVRLDVRADANENL
FVLEANPKPDLTRDNGSRTSIISSGLSQSGMDYDDLIFSLIANRLNFLFN
SRKTAVKHLI*
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mRNA from alignment at tig00000016_pilon:1608602..1609684-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10350.t1 ID=Ggra10350.t1|Name=Ggra10350.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1083bp|location=Sequence derived from alignment at tig00000016_pilon:1608602..1609684- (Gracilaria gracilis GNS1m male)
ATGCGCATTGCCGTCATCTACAGCGGATGTAATCAACAAAAAGGAGCTGT
CCTCCGATCTACCTCAAACCCACGTGGTTGGAAGAGCTACGAGAACGTTG
CGAATGACATTGCTCAGTCTCTCTCGCGACTGGGCTTTCAGAATGTTTTT
GTCTTCCCGGAGGATATGCAACTATCTGCTCGTCTTCGTGATCATTCCAT
TGATCTAGGGTGGCTTAATACAGGCGGTGTACAGGGCTTTGGATCTGTTG
CACATGCCGCTTCAATGCTTGAAATGCTTGGGATTCCGTACATTGGCCAT
GACCCTCTCAACTCTCTTGTCTTGGACAACAAGCACATGTTTAAGCAGCA
ACTCATCCACAATCGCATCCCTACTTCACCATTTGTTCACTATGGCTCCG
ATCCAAACGCCCTACCTCCCACGCGCACCAGCCAGTTCAAGAATGCCTTC
GGAGACTATGGTGGTCCTTTTGTGGTGAAGCCAGTTTCTGGCCGCGCATC
CAACAACGTCTCATTTGTTGATGACTATCACCAATTGGATGAAGTTGTCA
TATCTGGATGTCACAACACTGGAAACTTGATGATGATTGAGGCTTTTCTC
CCAGGTCGCGAGTTCTGTGTGGCCGTAAGTGGTCCAGTGGTTTCTCAACA
ACGCGCTTTGCAAGACCTTGGCAATCCCTTTGTATTCTCAGCAGTAGAAC
GGGTTTTGGACAATGGTGAGCACATTTTCACTTCTATGGATCGAAGACAG
ATCACAAGAGATCGTGTTCGCCTTCTAGATCCGGACAAAGACCACCTCGT
GATCGAAAAACTACATCGTTTAGCCCGCGACGTGCAAGTGGTCTTTTCTT
TGAGGTCGATTGTCAGACTGGATGTTAGAGCAGATGCGAATGAGAATTTG
TTTGTACTTGAAGCAAATCCAAAGCCAGACTTAACGAGAGACAATGGATC
ACGAACCAGCATCATCAGCAGTGGGCTTAGCCAGAGTGGAATGGACTACG
ATGATTTGATCTTCTCTCTCATCGCCAATCGTTTGAATTTCTTGTTCAAC
AGTCGAAAGACGGCGGTTAAACATCTAATTTAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:1608602..1609684-

>Ggra10350.t1 ID=Ggra10350.t1|Name=Ggra10350.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1083bp|location=Sequence derived from alignment at tig00000016_pilon:1608602..1609684- (Gracilaria gracilis GNS1m male)
ATGCGCATTGCCGTCATCTACAGCGGATGTAATCAACAAAAAGGAGCTGT
CCTCCGATCTACCTCAAACCCACGTGGTTGGAAGAGCTACGAGAACGTTG
CGAATGACATTGCTCAGTCTCTCTCGCGACTGGGCTTTCAGAATGTTTTT
GTCTTCCCGGAGGATATGCAACTATCTGCTCGTCTTCGTGATCATTCCAT
TGATCTAGGGTGGCTTAATACAGGCGGTGTACAGGGCTTTGGATCTGTTG
CACATGCCGCTTCAATGCTTGAAATGCTTGGGATTCCGTACATTGGCCAT
GACCCTCTCAACTCTCTTGTCTTGGACAACAAGCACATGTTTAAGCAGCA
ACTCATCCACAATCGCATCCCTACTTCACCATTTGTTCACTATGGCTCCG
ATCCAAACGCCCTACCTCCCACGCGCACCAGCCAGTTCAAGAATGCCTTC
GGAGACTATGGTGGTCCTTTTGTGGTGAAGCCAGTTTCTGGCCGCGCATC
CAACAACGTCTCATTTGTTGATGACTATCACCAATTGGATGAAGTTGTCA
TATCTGGATGTCACAACACTGGAAACTTGATGATGATTGAGGCTTTTCTC
CCAGGTCGCGAGTTCTGTGTGGCCGTAAGTGGTCCAGTGGTTTCTCAACA
ACGCGCTTTGCAAGACCTTGGCAATCCCTTTGTATTCTCAGCAGTAGAAC
GGGTTTTGGACAATGGTGAGCACATTTTCACTTCTATGGATCGAAGACAG
ATCACAAGAGATCGTGTTCGCCTTCTAGATCCGGACAAAGACCACCTCGT
GATCGAAAAACTACATCGTTTAGCCCGCGACGTGCAAGTGGTCTTTTCTT
TGAGGTCGATTGTCAGACTGGATGTTAGAGCAGATGCGAATGAGAATTTG
TTTGTACTTGAAGCAAATCCAAAGCCAGACTTAACGAGAGACAATGGATC
ACGAACCAGCATCATCAGCAGTGGGCTTAGCCAGAGTGGAATGGACTACG
ATGATTTGATCTTCTCTCTCATCGCCAATCGTTTGAATTTCTTGTTCAAC
AGTCGAAAGACGGCGGTTAAACATCTAATTTAG
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