Ggra10179.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10179.t1
Unique NameGgra10179.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length255
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:23952..24795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog529818.AMSG_05308T0
PFAMsMyb_DNA-binding
Max annot lvl2759|Eukaryota
KEGG koko:K09420,ko:K21769
KEGG Pathwayko04151,ko04218,ko05166,map04151,map04218,map05166
Evalue1.37e-29
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
COG categoryADK
BRITEko00000,ko00001,ko03000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10179Ggra10179Gracilaria gracilis GNS1m malegenetig00000016_pilon 23952..24795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10179.t1Ggra10179.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 23952..24795 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10179.t1.stop1Ggra10179.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 23952..23954 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10179.t1.CDS1Ggra10179.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 23952..24127 -
Ggra10179.t1.CDS2Ggra10179.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 24207..24795 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10179.t1.exon1Ggra10179.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 23952..24127 -
Ggra10179.t1.exon2Ggra10179.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 24207..24795 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10179.t1.intron1Ggra10179.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 24128..24206 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10179.t1.start1Ggra10179.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 24793..24795 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10179.t1 ID=Ggra10179.t1|Name=Ggra10179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=255bp
MPKLLHLPEQPRSLHAASPNHLPYLPPQAPHPHQHLPALSFRQTALTSLA
TPFVPPPPPPPLHAAPSTLRPQQHVHLLPSAHYLTPHCVLPPQSHYYPLQ
PPSSDERSVHSAPSLYDSSWRSPSYPSIHLHNNAPHSISKRPRKRGTVKR
LWTPHEDDRLRCLARLRPENWNVIAESLPGRTGKQCRERWLNHLQDGIRK
GFWTAREDAIILREQARRGNRWSDIARLLPGRSDNAVKNRFNATLKKQYM
RHPY*
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spliced messenger RNA

>Ggra10179.t1 ID=Ggra10179.t1|Name=Ggra10179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=765bp|location=Sequence derived from alignment at tig00000016_pilon:23952..24795- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCCAAGTTGTTACACCTCCCTGAGCAGCCTCGCTCGTTGCATGCTGC
CAGTCCCAATCACCTTCCCTATCTTCCGCCTCAAGCTCCGCATCCTCATC
AACACCTGCCCGCCTTATCGTTTCGACAAACAGCCCTCACCTCTTTGGCC
ACCCCTTTTGTGCCGCCTCCGCCTCCCCCGCCACTACACGCAGCACCATC
CACACTACGTCCCCAACAACATGTACATTTGCTTCCTTCTGCGCATTACC
TCACGCCTCACTGTGTACTTCCGCCCCAATCGCACTACTACCCGCTGCAG
CCACCAAGTTCGGACGAGCGTTCCGTACACTCTGCGCCCTCGTTGTATGA
TTCGAGCTGGCGCTCACCCTCCTACCCATCCATCCATCTTCACAACAACG
CGCCACACTCTATTTCGAAACGCCCCCGGAAGAGGGGTACTGTCAAGAGA
CTGTGGACGCCGCATGAGGACGATCGCCTTCGCTGTCTGGCGCGCCTTCG
CCCCGAGAACTGGAATGTGATCGCAGAGTCACTGCCCGGCCGTACCGGCA
AGCAGTGCCGAGAGAGGTGGCTCAATCATTTACAAGACGGCATTCGAAAG
GGTTTCTGGACTGCGCGGGAGGATGCCATCATTCTGCGGGAGCAGGCTAG
ACGAGGAAATCGCTGGAGCGACATTGCAAGGCTGTTGCCAGGGCGGAGCG
ATAACGCTGTGAAGAATCGCTTCAACGCCACGCTCAAAAAGCAATACATG
CGTCATCCATACTGA
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protein sequence of Ggra10179.t1

>Ggra10179.t1 ID=Ggra10179.t1|Name=Ggra10179.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=255bp
MPKLLHLPEQPRSLHAASPNHLPYLPPQAPHPHQHLPALSFRQTALTSLA
TPFVPPPPPPPLHAAPSTLRPQQHVHLLPSAHYLTPHCVLPPQSHYYPLQ
PPSSDERSVHSAPSLYDSSWRSPSYPSIHLHNNAPHSISKRPRKRGTVKR
LWTPHEDDRLRCLARLRPENWNVIAESLPGRTGKQCRERWLNHLQDGIRK
GFWTAREDAIILREQARRGNRWSDIARLLPGRSDNAVKNRFNATLKKQYM
RHPY*
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mRNA from alignment at tig00000016_pilon:23952..24795-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10179.t1 ID=Ggra10179.t1|Name=Ggra10179.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=844bp|location=Sequence derived from alignment at tig00000016_pilon:23952..24795- (Gracilaria gracilis GNS1m male)
ATGCCCAAGTTGTTACACCTCCCTGAGCAGCCTCGCTCGTTGCATGCTGC
CAGTCCCAATCACCTTCCCTATCTTCCGCCTCAAGCTCCGCATCCTCATC
AACACCTGCCCGCCTTATCGTTTCGACAAACAGCCCTCACCTCTTTGGCC
ACCCCTTTTGTGCCGCCTCCGCCTCCCCCGCCACTACACGCAGCACCATC
CACACTACGTCCCCAACAACATGTACATTTGCTTCCTTCTGCGCATTACC
TCACGCCTCACTGTGTACTTCCGCCCCAATCGCACTACTACCCGCTGCAG
CCACCAAGTTCGGACGAGCGTTCCGTACACTCTGCGCCCTCGTTGTATGA
TTCGAGCTGGCGCTCACCCTCCTACCCATCCATCCATCTTCACAACAACG
CGCCACACTCTATTTCGAAACGCCCCCGGAAGAGGGGTACTGTCAAGAGA
CTGTGGACGCCGCATGAGGACGATCGCCTTCGCTGTCTGGCGCGCCTTCG
CCCCGAGAACTGGAATGTGATCGCAGAGTCACTGCCCGGCCGTACCGGCA
AGCAGTGCCGAGAGAGGTGGCTCAATCATTTACAAGACGGTACGCCTGAG
TCATATACTTGTCTACTCTTTGCCCGCATGCAACTCTAACACAAACGCTC
GTGCTTCTGCCTGAACAGGCATTCGAAAGGGTTTCTGGACTGCGCGGGAG
GATGCCATCATTCTGCGGGAGCAGGCTAGACGAGGAAATCGCTGGAGCGA
CATTGCAAGGCTGTTGCCAGGGCGGAGCGATAACGCTGTGAAGAATCGCT
TCAACGCCACGCTCAAAAAGCAATACATGCGTCATCCATACTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:23952..24795-

>Ggra10179.t1 ID=Ggra10179.t1|Name=Ggra10179.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=765bp|location=Sequence derived from alignment at tig00000016_pilon:23952..24795- (Gracilaria gracilis GNS1m male)
ATGCCCAAGTTGTTACACCTCCCTGAGCAGCCTCGCTCGTTGCATGCTGC
CAGTCCCAATCACCTTCCCTATCTTCCGCCTCAAGCTCCGCATCCTCATC
AACACCTGCCCGCCTTATCGTTTCGACAAACAGCCCTCACCTCTTTGGCC
ACCCCTTTTGTGCCGCCTCCGCCTCCCCCGCCACTACACGCAGCACCATC
CACACTACGTCCCCAACAACATGTACATTTGCTTCCTTCTGCGCATTACC
TCACGCCTCACTGTGTACTTCCGCCCCAATCGCACTACTACCCGCTGCAG
CCACCAAGTTCGGACGAGCGTTCCGTACACTCTGCGCCCTCGTTGTATGA
TTCGAGCTGGCGCTCACCCTCCTACCCATCCATCCATCTTCACAACAACG
CGCCACACTCTATTTCGAAACGCCCCCGGAAGAGGGGTACTGTCAAGAGA
CTGTGGACGCCGCATGAGGACGATCGCCTTCGCTGTCTGGCGCGCCTTCG
CCCCGAGAACTGGAATGTGATCGCAGAGTCACTGCCCGGCCGTACCGGCA
AGCAGTGCCGAGAGAGGTGGCTCAATCATTTACAAGACGGCATTCGAAAG
GGTTTCTGGACTGCGCGGGAGGATGCCATCATTCTGCGGGAGCAGGCTAG
ACGAGGAAATCGCTGGAGCGACATTGCAAGGCTGTTGCCAGGGCGGAGCG
ATAACGCTGTGAAGAATCGCTTCAACGCCACGCTCAAAAAGCAATACATG
CGTCATCCATACTGA
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