Ggra1263.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra1263.t1
Unique NameGgra1263.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length492
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000208_piloncontigtig00000208_pilon:68678..71356 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra1263Ggra1263Gracilaria gracilis GNS1m malegenetig00000208_pilon 68678..71356 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1263.t1Ggra1263.t1Gracilaria gracilis GNS1m malepolypeptidetig00000208_pilon 68678..71356 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1263.t1.start1Ggra1263.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000208_pilon 68678..68680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1263.t1.CDS1Ggra1263.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000208_pilon 68678..69345 +
Ggra1263.t1.CDS2Ggra1263.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000208_pilon 70549..71356 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1263.t1.exon1Ggra1263.t1.exon1Gracilaria gracilis GNS1m maleexontig00000208_pilon 68678..69345 +
Ggra1263.t1.exon2Ggra1263.t1.exon2Gracilaria gracilis GNS1m maleexontig00000208_pilon 70549..71356 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1263.t1.intron1Ggra1263.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000208_pilon 69346..70548 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra1263.t1.stop1Ggra1263.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000208_pilon 71354..71356 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=492bp
MAHRTPSKTRSLQIDTSPPSPSGESVSLKRLSSDQTDLYEDTVETPLSLP
GLNENSDEHGHQNAKDDVQNDSTLAQTAHNGSKSPSHSQISNNSADQNMS
FSFDSEGEETDSVYNPQNKEGNNEENDSSYSQSKISDQNQTVSEVELRQL
VMDNFMNYPEAGVTTSNSINARQVTVEDMWSSLFCEDYSLDSLHSAEKTD
NEAQREADEARASVDGLDDWEYASVSENGTESNLSAGGTGKSIASMKVMQ
ILSQVQEVTLLQSEDPGWFLARGFRYTSRTTQSFLRTLSENHEDNIEALA
FLIKEKQIDYRLVTFPQGEEELKQCLMSKLIIFSRSMNMQLSCHHTLDEQ
EHAISSLMSSTAESLQAKTKNEILSILSAVGCRQPQSLLKRQLIEKTLEL
KCSVQNGTVQLALPSMQSMSAAQRVEVKKEKLLEALYKTSLTSWVMKPLV
STPGMKEGNVNESQVLKALPLFFEKSSVVDGDCLRSRQLSY*
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spliced messenger RNA

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1476bp|location=Sequence derived from alignment at tig00000208_pilon:68678..71356+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCACAGGACGCCATCAAAAACGCGAAGTCTGCAGATTGACACATC
CCCACCGTCCCCAAGTGGTGAAAGTGTTTCGCTCAAGCGGCTCTCGAGCG
ACCAAACCGATCTGTATGAAGACACCGTAGAAACACCACTTTCTCTACCG
GGTTTGAACGAGAATTCTGATGAGCACGGTCATCAGAACGCAAAAGATGA
TGTTCAAAATGACTCAACTCTTGCACAGACAGCTCACAATGGCAGCAAAT
CTCCCTCACATTCCCAAATCAGCAACAATAGTGCTGACCAAAACATGAGC
TTTTCGTTTGACTCAGAGGGGGAAGAAACAGATTCTGTTTACAATCCTCA
GAACAAAGAAGGCAACAATGAAGAAAATGATTCCTCATACAGTCAGTCTA
AAATCAGCGATCAGAACCAAACTGTCTCAGAAGTGGAGCTCCGTCAACTC
GTAATGGATAACTTTATGAACTATCCAGAAGCTGGCGTAACTACGTCGAA
TTCTATTAATGCAAGACAAGTGACGGTGGAAGATATGTGGTCGTCACTCT
TTTGTGAAGATTACAGCCTTGATTCGCTGCATTCTGCAGAGAAGACTGAC
AATGAAGCTCAACGGGAGGCCGATGAAGCTCGTGCATCCgtggatggact
tgacgactgggaatatgcTTCTGTGTCAGAAAACGGCACAGAAAGCAATC
TTTCAGCTGGTGGTACCGGGAAATCAATTGCTAGTATGAAAGTCATGCAG
ATTCTCTCGCAAGTACAAGAAGTTACATTGCTACAGTCTGAGGATCCGGG
ATGGTTCCTCGCACGAGGATTTCGGTACACATCGCGAACCACGCAATCTT
TTCTTCGCACTTTGTCGGAGAACCATGAAGATAATATTGAGGCTCTTGCT
TTCCTAATTAAGGAAAAACAAATCGATTATCGCCTTGTAACATTTCCTCA
GGGAGAAGAAGAATTGAAACAGTGCTTAATGTCGAAGCTAATTATCTTCA
GTCGTTCGATGAATATGCAATTAAGCTGCCACCATACGTTAGACGAACAA
GAACATGCAATTTCTTCTCTCATGTCTAGTACTGCGGAGAGTTTACAAGC
GAAGACCAAGAACGAAATTCTCTCTATTTTGAGTGCTGTTGGATGTAGAC
AGCCTCAATCGCTTCTGAAACGACAGCTGATCGAGAAGACATTGGAACTT
AAATGTTCTGTGCAAAATGGTACGGTGCAGTTGGCATTACCATCCATGCA
GAGCATGTCAGCCGCTCAAAGAGTCGAAGTCAAAAAGGAAAAGCTTTTGG
AGGCCTTGTACAAAACCTCACTTACTTCTTGGGTCATGAAGCCCCTCGTG
AGTACACCCGGAATGAAAGAAGGGAACGTGAATGAGTCTCAGGTTTTAAA
GGCGTTGCCTTTGTTTTTCGAGAAGAGCAGTGTGGTTGATGGGGACTGTC
TTAGATCCAGACAACTATCTTATTGA
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protein sequence of Ggra1263.t1

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=492bp
MAHRTPSKTRSLQIDTSPPSPSGESVSLKRLSSDQTDLYEDTVETPLSLP
GLNENSDEHGHQNAKDDVQNDSTLAQTAHNGSKSPSHSQISNNSADQNMS
FSFDSEGEETDSVYNPQNKEGNNEENDSSYSQSKISDQNQTVSEVELRQL
VMDNFMNYPEAGVTTSNSINARQVTVEDMWSSLFCEDYSLDSLHSAEKTD
NEAQREADEARASVDGLDDWEYASVSENGTESNLSAGGTGKSIASMKVMQ
ILSQVQEVTLLQSEDPGWFLARGFRYTSRTTQSFLRTLSENHEDNIEALA
FLIKEKQIDYRLVTFPQGEEELKQCLMSKLIIFSRSMNMQLSCHHTLDEQ
EHAISSLMSSTAESLQAKTKNEILSILSAVGCRQPQSLLKRQLIEKTLEL
KCSVQNGTVQLALPSMQSMSAAQRVEVKKEKLLEALYKTSLTSWVMKPLV
STPGMKEGNVNESQVLKALPLFFEKSSVVDGDCLRSRQLSY*
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mRNA from alignment at tig00000208_pilon:68678..71356+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2679bp|location=Sequence derived from alignment at tig00000208_pilon:68678..71356+ (Gracilaria gracilis GNS1m male)
ATGGCGCACAGGACGCCATCAAAAACGCGAAGTCTGCAGATTGACACATC
CCCACCGTCCCCAAGTGGTGAAAGTGTTTCGCTCAAGCGGCTCTCGAGCG
ACCAAACCGATCTGTATGAAGACACCGTAGAAACACCACTTTCTCTACCG
GGTTTGAACGAGAATTCTGATGAGCACGGTCATCAGAACGCAAAAGATGA
TGTTCAAAATGACTCAACTCTTGCACAGACAGCTCACAATGGCAGCAAAT
CTCCCTCACATTCCCAAATCAGCAACAATAGTGCTGACCAAAACATGAGC
TTTTCGTTTGACTCAGAGGGGGAAGAAACAGATTCTGTTTACAATCCTCA
GAACAAAGAAGGCAACAATGAAGAAAATGATTCCTCATACAGTCAGTCTA
AAATCAGCGATCAGAACCAAACTGTCTCAGAAGTGGAGCTCCGTCAACTC
GTAATGGATAACTTTATGAACTATCCAGAAGCTGGCGTAACTACGTCGAA
TTCTATTAATGCAAGACAAGTGACGGTGGAAGATATGTGGTCGTCACTCT
TTTGTGAAGATTACAGCCTTGATTCGCTGCATTCTGCAGAGAAGACTGAC
AATGAAGCTCAACGGGAGGCCGATGAAGCTCGTGCATCCgtggatggact
tgacgactgggaatatgcgtcaccatttcaatcgctaacgattgacattg
atggcataaaccgagatctaggaaaacgttttttgtccgaagctaatcat
atattacaacaggtcaccaaagaagctcaagaaaaacatgtggtggaagg
ggtcctctctatgaacaacatgaccagactgaatgtcttggacgtgtttt
tgcctgagcatgtgcttctcaaagtggtttcaaatgttaatcgcgtactt
aaattcaaaaagcagaagcccaccactccctttgagttcaaaggtgttct
tatactacacgttttagcggcatcatatagttccacagtgagtacaataa
ctgcaaagcgaaacaaagagtttttctttcaaatgggaatttcgtgtgct
agatactccgaagtgtggtgttcgctgtcgtgtacagtaggaagaaggca
aagatttgagagcctaggagagggatggtcgaacttccctcaaagagcca
acccattgatcacagaattggaagatgaactcgcggccgtgaacagactg
cttttgtacgtaccgggtgtgacaatttttagtcttgacgacgaccatca
gaggcttcgatcgagagcagttgcgcaattaacgatgatgtctcatgtta
acaatccacataaagctcttggaccagttaataatgcgatgtgttctgcg
ctaaatccagtgtttttagcttctcactattcacgtccgtgcgaaaggat
catagatgtcttggagcgattggtccgcctgatacaaggtgtgccaactg
cagggcctgtacgccctatgacagacgctatatttgcctctgacagaggc
tataactcaaaagagtcagtagactacatcacagatcgagttggagcaac
tggaatcggaacgtataagcgtagtctgaattatccatttgtttttggag
aaggttcgattcggaagaagcataaggggatggtggtgagtgagagaaga
tgcagggcagtatatggtgcacgaaggaaagcaaagtccttaactggacg
aactgtagaagccgttgtgtatcgcgagagctgtagtggccgtatcgctg
ctatgtatcataataacgataacttgttttccgctacacactttaaactc
atagccaagacgggatacaagcaggtaaggacacagcgtgagagagagct
ttttcatttggtctttgatAGTTCTGTGTCAGAAAACGGCACAGAAAGCA
ATCTTTCAGCTGGTGGTACCGGGAAATCAATTGCTAGTATGAAAGTCATG
CAGATTCTCTCGCAAGTACAAGAAGTTACATTGCTACAGTCTGAGGATCC
GGGATGGTTCCTCGCACGAGGATTTCGGTACACATCGCGAACCACGCAAT
CTTTTCTTCGCACTTTGTCGGAGAACCATGAAGATAATATTGAGGCTCTT
GCTTTCCTAATTAAGGAAAAACAAATCGATTATCGCCTTGTAACATTTCC
TCAGGGAGAAGAAGAATTGAAACAGTGCTTAATGTCGAAGCTAATTATCT
TCAGTCGTTCGATGAATATGCAATTAAGCTGCCACCATACGTTAGACGAA
CAAGAACATGCAATTTCTTCTCTCATGTCTAGTACTGCGGAGAGTTTACA
AGCGAAGACCAAGAACGAAATTCTCTCTATTTTGAGTGCTGTTGGATGTA
GACAGCCTCAATCGCTTCTGAAACGACAGCTGATCGAGAAGACATTGGAA
CTTAAATGTTCTGTGCAAAATGGTACGGTGCAGTTGGCATTACCATCCAT
GCAGAGCATGTCAGCCGCTCAAAGAGTCGAAGTCAAAAAGGAAAAGCTTT
TGGAGGCCTTGTACAAAACCTCACTTACTTCTTGGGTCATGAAGCCCCTC
GTGAGTACACCCGGAATGAAAGAAGGGAACGTGAATGAGTCTCAGGTTTT
AAAGGCGTTGCCTTTGTTTTTCGAGAAGAGCAGTGTGGTTGATGGGGACT
GTCTTAGATCCAGACAACTATCTTATTGA
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Coding sequence (CDS) from alignment at tig00000208_pilon:68678..71356+

>Ggra1263.t1 ID=Ggra1263.t1|Name=Ggra1263.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1476bp|location=Sequence derived from alignment at tig00000208_pilon:68678..71356+ (Gracilaria gracilis GNS1m male)
ATGGCGCACAGGACGCCATCAAAAACGCGAAGTCTGCAGATTGACACATC
CCCACCGTCCCCAAGTGGTGAAAGTGTTTCGCTCAAGCGGCTCTCGAGCG
ACCAAACCGATCTGTATGAAGACACCGTAGAAACACCACTTTCTCTACCG
GGTTTGAACGAGAATTCTGATGAGCACGGTCATCAGAACGCAAAAGATGA
TGTTCAAAATGACTCAACTCTTGCACAGACAGCTCACAATGGCAGCAAAT
CTCCCTCACATTCCCAAATCAGCAACAATAGTGCTGACCAAAACATGAGC
TTTTCGTTTGACTCAGAGGGGGAAGAAACAGATTCTGTTTACAATCCTCA
GAACAAAGAAGGCAACAATGAAGAAAATGATTCCTCATACAGTCAGTCTA
AAATCAGCGATCAGAACCAAACTGTCTCAGAAGTGGAGCTCCGTCAACTC
GTAATGGATAACTTTATGAACTATCCAGAAGCTGGCGTAACTACGTCGAA
TTCTATTAATGCAAGACAAGTGACGGTGGAAGATATGTGGTCGTCACTCT
TTTGTGAAGATTACAGCCTTGATTCGCTGCATTCTGCAGAGAAGACTGAC
AATGAAGCTCAACGGGAGGCCGATGAAGCTCGTGCATCCgtggatggact
tgacgactgggaatatgcTTCTGTGTCAGAAAACGGCACAGAAAGCAATC
TTTCAGCTGGTGGTACCGGGAAATCAATTGCTAGTATGAAAGTCATGCAG
ATTCTCTCGCAAGTACAAGAAGTTACATTGCTACAGTCTGAGGATCCGGG
ATGGTTCCTCGCACGAGGATTTCGGTACACATCGCGAACCACGCAATCTT
TTCTTCGCACTTTGTCGGAGAACCATGAAGATAATATTGAGGCTCTTGCT
TTCCTAATTAAGGAAAAACAAATCGATTATCGCCTTGTAACATTTCCTCA
GGGAGAAGAAGAATTGAAACAGTGCTTAATGTCGAAGCTAATTATCTTCA
GTCGTTCGATGAATATGCAATTAAGCTGCCACCATACGTTAGACGAACAA
GAACATGCAATTTCTTCTCTCATGTCTAGTACTGCGGAGAGTTTACAAGC
GAAGACCAAGAACGAAATTCTCTCTATTTTGAGTGCTGTTGGATGTAGAC
AGCCTCAATCGCTTCTGAAACGACAGCTGATCGAGAAGACATTGGAACTT
AAATGTTCTGTGCAAAATGGTACGGTGCAGTTGGCATTACCATCCATGCA
GAGCATGTCAGCCGCTCAAAGAGTCGAAGTCAAAAAGGAAAAGCTTTTGG
AGGCCTTGTACAAAACCTCACTTACTTCTTGGGTCATGAAGCCCCTCGTG
AGTACACCCGGAATGAAAGAAGGGAACGTGAATGAGTCTCAGGTTTTAAA
GGCGTTGCCTTTGTTTTTCGAGAAGAGCAGTGTGGTTGATGGGGACTGTC
TTAGATCCAGACAACTATCTTATTGA
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