Ggra11085.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11085.t1
Unique NameGgra11085.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:79952..81565 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706193.1
Preferred nameADSL
PFAMsADSL_C,Lyase_1
Max annot lvl2759|Eukaryota
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
GOsGO:0003674,GO:0003824,GO:0004018,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006091,GO:0006106,GO:0006139,GO:0006163,GO:0006164,GO:0006167,GO:0006188,GO:0006189,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009060,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009259,GO:0009260,GO:0009605,GO:0009987,GO:0009991,GO:0015980,GO:0016043,GO:0016829,GO:0016840,GO:0016842,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0022607,GO:0031667,GO:0034641,GO:0034654,GO:0042221,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044208,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045333,GO:0046033,GO:0046040,GO:0046390,GO:0046483,GO:0050896,GO:0051259,GO:0051262,GO:0055086,GO:0055114,GO:0065003,GO:0070626,GO:0071704,GO:0071840,GO:0072521,GO:0072522,GO:0090407,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Evalue1.71e-224
EggNOG OGsCOG0015@1|root,KOG2700@2759|Eukaryota
EC4.3.2.2
Description(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido)succinate AMP-lyase (fumarate-forming) activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11085Ggra11085Gracilaria gracilis GNS1m malegenetig00000207_pilon 79952..81565 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11085.t1.start1Ggra11085.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 79952..79954 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11085.t1.CDS1Ggra11085.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 79952..81565 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11085.t1.exon1Ggra11085.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 79952..81565 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11085.t1.stop1Ggra11085.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 81563..81565 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11085.t1Ggra11085.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 79952..81565 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11085.t1 ID=Ggra11085.t1|Name=Ggra11085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=538bp
MSTAFVAAAAVSPGRTPRGTLRERCSLRVMSSPRAPPKAQPAAMNAAAGA
GGGEQPELNYVSPLSTRYASKRMRENFADLTRFRLWRQLWVALAEAQHQL
GLSQVGEQQLHALRNAPDVDLQLAGEYEAKLRHDVMAHVHALGDQVPDAR
AIIHLGATSCFVTDNSEIIQMCNALDLLIASLWQSISNLSRFALQYCELP
TLAFTHLQAAQPTTVGKRAALWLQDFLFDAHNLEHVRASIKFRGAKGTTG
TQASFLSLFDGDHHKVQELDRMVTRAMGFEHCWPLTAQTYSRKQDFFVLS
ALAGVGQSAAKMANDIRLLQHMKELEEPFGAKQIGSSAMAYKRNPMRCER
INALARFLQTLMLNPAETACTQWLERSLDDSANRRLANSEAFLCTDSILQ
LVLNVSDGLVVYPKMIGKHVDEELPFMATENILMAGVQAGGDRQQLHEAI
RVHAMAAAKRVKQQALPNDLLQRLRDDPLFERVRARLPQLCDGGAFVGRA
PQQVRHFVQRHVQPALAERHALLHGGGGASASGDVRI*
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spliced messenger RNA

>Ggra11085.t1 ID=Ggra11085.t1|Name=Ggra11085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000207_pilon:79952..81565+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGACGGCGTTCGTTGCGGCTGCTGCAGTATCGCCCGGCCGTACGCC
GCGTGGGACGCTGCGGGAGCGCTGTTCGCTGCGCGTCATGTCTTCGCCGC
GCGCGCCGCCCAAGGCGCAGCCGGCCGCGATGAACGCCGCGGCTGGCGCT
GGCGGCGGTGAGCAACCAGAGCTCAACTATGTGTCGCCGTTGTCGACGCG
CTACGCGTCCAAGCGCATGCGCGAGAACTTTGCCGACTTGACGCGCTTCC
GGCTGTGGCGGCAGCTGTGGGTGGCGCTGGCCGAGGCGCAGCACCAGCTG
GGGCTGTCGCAGGTGGGCGAGCAGCAGCTACACGCGCTGCGCAACGCGCC
GGACGTGGATCTGCAGCTGGCGGGCGAGTACGAGGCCAAGCTGCGCCATG
ACGTGATGGCGCACGTTCACGCGCTGGGAGATCAGGTGCCGGACGCGCGC
GCCATCATCCACCTGGGCGCCACGTCGTGCTTCGTCACCGACAACTCGGA
GATCATTCAGATGTGCAACGCATTGGATCTGCTCATTGCATCGCTGTGGC
AGAGCATCTCCAACCTGTCGCGCTTCGCGCTGCAGTACTGCGAGCTGCCC
ACGTTGGCGTTCACGCACCTGCAGGCGGCGCAGCCGACGACGGTGGGCAA
GCGCGCCGCGCTGTGGCTGCAGGACTTTTTGTTCGACGCGCACAACCTGG
AGCACGTGCGCGCGTCCATCAAGTTCCGCGGCGCCAAGGGCACCACCGGC
ACACAGGCGTCGTTCCTGTCGCTGTTCGACGGCGACCACCACAAGGTGCA
GGAGCTGGACCGCATGGTCACGCGCGCCATGGGCTTTGAGCACTGCTGGC
CGCTTACCGCGCAGACGTACAGCCGCAAGCAGGACTTTTTCGTGCTGAGC
GCGCTGGCGGGCGTGGGGCAAAGCGCGGCCAAGATGGCCAACGACATTCG
GCTGCTGCAGCACATGAAGGAGCTGGAGGAACCGTTCGGCGCCAAGCAGA
TCGGCTCCAGCGCCATGGCGTACAAACGCAACCCCATGCGCTGCGAGCGC
ATCAACGCGCTGGCGCGTTTCCTGCAGACGCTGATGCTAAACCCGGCGGA
GACGGCGTGCACGCAGTGGCTGGAGCGCAGCCTGGACGACTCTGCCAACC
GAAGACTGGCCAACTCGGAGGCGTTCCTGTGCACGGACTCCATCCTGCAG
CTGGTGCTCAACGTGTCGGACGGGCTGGTGGTATACCCCAAGATGATCGG
GAAGCACGTGGACGAGGAGCTGCCGTTCATGGCGACGGAGAACATCCTGA
TGGCGGGCGTGCAGGCGGGCGGCGACCGACAGCAGCTGCACGAGGCCATC
CGCGTGCACGCCATGGCGGCGGCCAAGCGCGTCAAGCAGCAGGCGCTGCC
CAACGACCTGCTGCAGCGGCTGCGCGACGACCCGCTGTTCGAGCGCGTGC
GCGCGCGTCTGCCGCAGCTGTGCGACGGCGGCGCGTTTGTGGGGCGCGCG
CCGCAGCAGGTGCGCCACTTTGTGCAGCGCCACGTGCAGCcggcgctggc
ggagcgccacgcgctgctgcacggcggcggcggcgcgtccgccagcggcg
acgTTCGCATCTGA
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protein sequence of Ggra11085.t1

>Ggra11085.t1 ID=Ggra11085.t1|Name=Ggra11085.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=538bp
MSTAFVAAAAVSPGRTPRGTLRERCSLRVMSSPRAPPKAQPAAMNAAAGA
GGGEQPELNYVSPLSTRYASKRMRENFADLTRFRLWRQLWVALAEAQHQL
GLSQVGEQQLHALRNAPDVDLQLAGEYEAKLRHDVMAHVHALGDQVPDAR
AIIHLGATSCFVTDNSEIIQMCNALDLLIASLWQSISNLSRFALQYCELP
TLAFTHLQAAQPTTVGKRAALWLQDFLFDAHNLEHVRASIKFRGAKGTTG
TQASFLSLFDGDHHKVQELDRMVTRAMGFEHCWPLTAQTYSRKQDFFVLS
ALAGVGQSAAKMANDIRLLQHMKELEEPFGAKQIGSSAMAYKRNPMRCER
INALARFLQTLMLNPAETACTQWLERSLDDSANRRLANSEAFLCTDSILQ
LVLNVSDGLVVYPKMIGKHVDEELPFMATENILMAGVQAGGDRQQLHEAI
RVHAMAAAKRVKQQALPNDLLQRLRDDPLFERVRARLPQLCDGGAFVGRA
PQQVRHFVQRHVQPALAERHALLHGGGGASASGDVRI*
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mRNA from alignment at tig00000207_pilon:79952..81565+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11085.t1 ID=Ggra11085.t1|Name=Ggra11085.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000207_pilon:79952..81565+ (Gracilaria gracilis GNS1m male)
ATGTCGACGGCGTTCGTTGCGGCTGCTGCAGTATCGCCCGGCCGTACGCC
GCGTGGGACGCTGCGGGAGCGCTGTTCGCTGCGCGTCATGTCTTCGCCGC
GCGCGCCGCCCAAGGCGCAGCCGGCCGCGATGAACGCCGCGGCTGGCGCT
GGCGGCGGTGAGCAACCAGAGCTCAACTATGTGTCGCCGTTGTCGACGCG
CTACGCGTCCAAGCGCATGCGCGAGAACTTTGCCGACTTGACGCGCTTCC
GGCTGTGGCGGCAGCTGTGGGTGGCGCTGGCCGAGGCGCAGCACCAGCTG
GGGCTGTCGCAGGTGGGCGAGCAGCAGCTACACGCGCTGCGCAACGCGCC
GGACGTGGATCTGCAGCTGGCGGGCGAGTACGAGGCCAAGCTGCGCCATG
ACGTGATGGCGCACGTTCACGCGCTGGGAGATCAGGTGCCGGACGCGCGC
GCCATCATCCACCTGGGCGCCACGTCGTGCTTCGTCACCGACAACTCGGA
GATCATTCAGATGTGCAACGCATTGGATCTGCTCATTGCATCGCTGTGGC
AGAGCATCTCCAACCTGTCGCGCTTCGCGCTGCAGTACTGCGAGCTGCCC
ACGTTGGCGTTCACGCACCTGCAGGCGGCGCAGCCGACGACGGTGGGCAA
GCGCGCCGCGCTGTGGCTGCAGGACTTTTTGTTCGACGCGCACAACCTGG
AGCACGTGCGCGCGTCCATCAAGTTCCGCGGCGCCAAGGGCACCACCGGC
ACACAGGCGTCGTTCCTGTCGCTGTTCGACGGCGACCACCACAAGGTGCA
GGAGCTGGACCGCATGGTCACGCGCGCCATGGGCTTTGAGCACTGCTGGC
CGCTTACCGCGCAGACGTACAGCCGCAAGCAGGACTTTTTCGTGCTGAGC
GCGCTGGCGGGCGTGGGGCAAAGCGCGGCCAAGATGGCCAACGACATTCG
GCTGCTGCAGCACATGAAGGAGCTGGAGGAACCGTTCGGCGCCAAGCAGA
TCGGCTCCAGCGCCATGGCGTACAAACGCAACCCCATGCGCTGCGAGCGC
ATCAACGCGCTGGCGCGTTTCCTGCAGACGCTGATGCTAAACCCGGCGGA
GACGGCGTGCACGCAGTGGCTGGAGCGCAGCCTGGACGACTCTGCCAACC
GAAGACTGGCCAACTCGGAGGCGTTCCTGTGCACGGACTCCATCCTGCAG
CTGGTGCTCAACGTGTCGGACGGGCTGGTGGTATACCCCAAGATGATCGG
GAAGCACGTGGACGAGGAGCTGCCGTTCATGGCGACGGAGAACATCCTGA
TGGCGGGCGTGCAGGCGGGCGGCGACCGACAGCAGCTGCACGAGGCCATC
CGCGTGCACGCCATGGCGGCGGCCAAGCGCGTCAAGCAGCAGGCGCTGCC
CAACGACCTGCTGCAGCGGCTGCGCGACGACCCGCTGTTCGAGCGCGTGC
GCGCGCGTCTGCCGCAGCTGTGCGACGGCGGCGCGTTTGTGGGGCGCGCG
CCGCAGCAGGTGCGCCACTTTGTGCAGCGCCACGTGCAGCcggcgctggc
ggagcgccacgcgctgctgcacggcggcggcggcgcgtccgccagcggcg
acgTTCGCATCTGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:79952..81565+

>Ggra11085.t1 ID=Ggra11085.t1|Name=Ggra11085.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00000207_pilon:79952..81565+ (Gracilaria gracilis GNS1m male)
ATGTCGACGGCGTTCGTTGCGGCTGCTGCAGTATCGCCCGGCCGTACGCC
GCGTGGGACGCTGCGGGAGCGCTGTTCGCTGCGCGTCATGTCTTCGCCGC
GCGCGCCGCCCAAGGCGCAGCCGGCCGCGATGAACGCCGCGGCTGGCGCT
GGCGGCGGTGAGCAACCAGAGCTCAACTATGTGTCGCCGTTGTCGACGCG
CTACGCGTCCAAGCGCATGCGCGAGAACTTTGCCGACTTGACGCGCTTCC
GGCTGTGGCGGCAGCTGTGGGTGGCGCTGGCCGAGGCGCAGCACCAGCTG
GGGCTGTCGCAGGTGGGCGAGCAGCAGCTACACGCGCTGCGCAACGCGCC
GGACGTGGATCTGCAGCTGGCGGGCGAGTACGAGGCCAAGCTGCGCCATG
ACGTGATGGCGCACGTTCACGCGCTGGGAGATCAGGTGCCGGACGCGCGC
GCCATCATCCACCTGGGCGCCACGTCGTGCTTCGTCACCGACAACTCGGA
GATCATTCAGATGTGCAACGCATTGGATCTGCTCATTGCATCGCTGTGGC
AGAGCATCTCCAACCTGTCGCGCTTCGCGCTGCAGTACTGCGAGCTGCCC
ACGTTGGCGTTCACGCACCTGCAGGCGGCGCAGCCGACGACGGTGGGCAA
GCGCGCCGCGCTGTGGCTGCAGGACTTTTTGTTCGACGCGCACAACCTGG
AGCACGTGCGCGCGTCCATCAAGTTCCGCGGCGCCAAGGGCACCACCGGC
ACACAGGCGTCGTTCCTGTCGCTGTTCGACGGCGACCACCACAAGGTGCA
GGAGCTGGACCGCATGGTCACGCGCGCCATGGGCTTTGAGCACTGCTGGC
CGCTTACCGCGCAGACGTACAGCCGCAAGCAGGACTTTTTCGTGCTGAGC
GCGCTGGCGGGCGTGGGGCAAAGCGCGGCCAAGATGGCCAACGACATTCG
GCTGCTGCAGCACATGAAGGAGCTGGAGGAACCGTTCGGCGCCAAGCAGA
TCGGCTCCAGCGCCATGGCGTACAAACGCAACCCCATGCGCTGCGAGCGC
ATCAACGCGCTGGCGCGTTTCCTGCAGACGCTGATGCTAAACCCGGCGGA
GACGGCGTGCACGCAGTGGCTGGAGCGCAGCCTGGACGACTCTGCCAACC
GAAGACTGGCCAACTCGGAGGCGTTCCTGTGCACGGACTCCATCCTGCAG
CTGGTGCTCAACGTGTCGGACGGGCTGGTGGTATACCCCAAGATGATCGG
GAAGCACGTGGACGAGGAGCTGCCGTTCATGGCGACGGAGAACATCCTGA
TGGCGGGCGTGCAGGCGGGCGGCGACCGACAGCAGCTGCACGAGGCCATC
CGCGTGCACGCCATGGCGGCGGCCAAGCGCGTCAAGCAGCAGGCGCTGCC
CAACGACCTGCTGCAGCGGCTGCGCGACGACCCGCTGTTCGAGCGCGTGC
GCGCGCGTCTGCCGCAGCTGTGCGACGGCGGCGCGTTTGTGGGGCGCGCG
CCGCAGCAGGTGCGCCACTTTGTGCAGCGCCACGTGCAGCcggcgctggc
ggagcgccacgcgctgctgcacggcggcggcggcgcgtccgccagcggcg
acgTTCGCATCTGA
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