Ggra11057.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11057.t1
Unique NameGgra11057.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length442
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:5773..7098 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704102.1
Preferred nameUBA3
PFAMsE2_bind,ThiF
Max annot lvl2759|Eukaryota
KEGG koko:K10686,ko:K12462
KEGG Pathwayko04120,ko04722,ko04962,map04120,map04722,map04962
GOsGO:0000278,GO:0003674,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006464,GO:0006508,GO:0006807,GO:0007049,GO:0007113,GO:0008134,GO:0008150,GO:0008152,GO:0008589,GO:0008641,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016740,GO:0016874,GO:0016877,GO:0016922,GO:0019219,GO:0019222,GO:0019538,GO:0019781,GO:0019787,GO:0019788,GO:0023051,GO:0023057,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032446,GO:0032991,GO:0035257,GO:0036211,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043516,GO:0043518,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0045116,GO:0045879,GO:0045892,GO:0045934,GO:0046982,GO:0046983,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051427,GO:0051726,GO:0060255,GO:0065007,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0140096,GO:1901564,GO:1901796,GO:1901797,GO:1902531,GO:1902532,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001020,GO:2001021,GO:2001141
Evalue1.44e-159
EggNOG OGsCOG0476@1|root,KOG2015@2759|Eukaryota
EC6.2.1.45
DescriptionNEDD8 activating enzyme activity
COG categoryH
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11057Ggra11057Gracilaria gracilis GNS1m malegenetig00000207_pilon 5773..7098 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11057.t1.start1Ggra11057.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 5773..5775 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11057.t1.CDS1Ggra11057.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 5773..7098 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11057.t1.exon1Ggra11057.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 5773..7098 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11057.t1.stop1Ggra11057.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 7096..7098 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11057.t1Ggra11057.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 5773..7098 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11057.t1 ID=Ggra11057.t1|Name=Ggra11057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=442bp
MQTGDESRDVPGWKPGAPSWGGLDHLLRNAGPLSGDLSVEGADSTERFLR
QHCKVLIIGAGGLGCELLKDVALSGFRHIHVIDLDTIDVTNLNRQFLFRS
TDVGKSKAEVAARFSNSRVPGCSVIAHHANIMDFESDFYQQFNIVIAGLD
SVEARRWLNAMLVSLVRFDSDGSVNRSSVIPLIDGGTEGFQGQARIIFPR
FTSCFECTLNLFPPQQNYPFCTIANTPRLPEHCIEYANVILWDKLKPFGN
AKLDMDNVEHTTWLYKTAKARAEQFGIGGVTLRLTQGVAKNIIPAVASTN
AIVAAACANEALKMISCIAANMDNYMMYNGTIGVYTYTYKNEKRPDCPVC
GVPQPKTMHVVGTDSLAEFLEQIAADPDIRSKKPFLRSNTGKTLYASTSP
LREATQLNLEKRLNELITSGTEVTLADKDLPFIRTLVINYK*
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spliced messenger RNA

>Ggra11057.t1 ID=Ggra11057.t1|Name=Ggra11057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000207_pilon:5773..7098+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAACTGGAGATGAGTCCCGCGATGTCCCAGGCTGGAAACCGGGGGC
ACCTTCGTGGGGTGGATTAGATCATCTTCTTCGCAATGCAGGACCTCTTT
CCGGAGATCTCAGTGTCGAAGGCGCAGATTCCACAGAGAGGTTCCTGCGT
CAACATTGCAAGGTACTTATCATCGGTGCGGGTGGTCTGGGATGCGAGCT
ATTAAAAGACGTTGCCCTCTCAGGGTTTCGTCACATCCATGTAATAGATC
TCGACACAATTGATGTTACCAACCTTAACAGACAGTTTTTATTTCGGTCC
ACTGATGTAGGCAAGTCAAAGGCCGAAGTCGCCGCACGGTTTAGCAATTC
ACGAGTGCCAGGATGCAGCGTCATAGCTCATCATGCTAATATCATGGATT
TCGAGAGTGACTTTTATCAACAGTTCAATATCGTTATTGCTGGTCTTGAT
TCTGTCGAAGCGCGTCGGTGGCTGAATGCTATGTTGGTCAGTTTGGTTCG
GTTTGATTCTGATGGTTCAGTCAACCGATCCTCAGTAATACCCCTGATTG
ATGGCGGTACCGAAGGCTTTCAAGGTCAGGCACGAATTATATTTCCGCGA
TTTACATCCTGCTTCGAATGTACGCTCAACTTGTTTCCACCACAACAAAA
TTATCCGTTCTGTACTATTGCAAACACACCAAGACTGCCTGAACATTGCA
TTGAGTATGCAAACGTCATTTTATGGGACAAACTCAAGCCTTTTGGAAAT
GCAAAGCTAGATATGGACAATGTTGAGCACACAACTTGGTTGTACAAAAC
AGCGAAGGCCAGAGCAGAACAATTTGGAATAGGGGGTGTTACCCTACGAT
TAACGCAAGGGGTTGCGAAAAATATCATTCCAGCAGTGGCATCCACAAAT
GCCATTGTAGCCGCTGCTTGTGCTAATGAAGCACTGAAGATGATATCTTG
CATTGCTGCAAACATGGACAATTATATGATGTATAATGGAACAATCGGAG
TATATACATACACTTATAAGAATGAAAAAAGACCCGATTGCCCGGTGTGT
GGAGTTCCTCAACCAAAGACTATGCACGTCGTAGGCACGGATTCTCTCGC
CGAGTTTCTTGAGCAAATAGCCGCAGATCCTGACATTCGCTCCAAGAAAC
CGTTCTTACGTTCAAACACGGGCAAGACCCTGTACGCGTCCACATCCCCA
CTTCGAGAAGCAACACAACTGAATTTGGAAAAGAGGTTAAACGAATTAAT
CACTTCGGGCACGGAGGTCACATTGGCAGACAAAGATTTGCCCTTTATTC
GAACTCTTGTCATTAACTACAAATAG
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protein sequence of Ggra11057.t1

>Ggra11057.t1 ID=Ggra11057.t1|Name=Ggra11057.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=442bp
MQTGDESRDVPGWKPGAPSWGGLDHLLRNAGPLSGDLSVEGADSTERFLR
QHCKVLIIGAGGLGCELLKDVALSGFRHIHVIDLDTIDVTNLNRQFLFRS
TDVGKSKAEVAARFSNSRVPGCSVIAHHANIMDFESDFYQQFNIVIAGLD
SVEARRWLNAMLVSLVRFDSDGSVNRSSVIPLIDGGTEGFQGQARIIFPR
FTSCFECTLNLFPPQQNYPFCTIANTPRLPEHCIEYANVILWDKLKPFGN
AKLDMDNVEHTTWLYKTAKARAEQFGIGGVTLRLTQGVAKNIIPAVASTN
AIVAAACANEALKMISCIAANMDNYMMYNGTIGVYTYTYKNEKRPDCPVC
GVPQPKTMHVVGTDSLAEFLEQIAADPDIRSKKPFLRSNTGKTLYASTSP
LREATQLNLEKRLNELITSGTEVTLADKDLPFIRTLVINYK*
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mRNA from alignment at tig00000207_pilon:5773..7098+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11057.t1 ID=Ggra11057.t1|Name=Ggra11057.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1326bp|location=Sequence derived from alignment at tig00000207_pilon:5773..7098+ (Gracilaria gracilis GNS1m male)
ATGCAAACTGGAGATGAGTCCCGCGATGTCCCAGGCTGGAAACCGGGGGC
ACCTTCGTGGGGTGGATTAGATCATCTTCTTCGCAATGCAGGACCTCTTT
CCGGAGATCTCAGTGTCGAAGGCGCAGATTCCACAGAGAGGTTCCTGCGT
CAACATTGCAAGGTACTTATCATCGGTGCGGGTGGTCTGGGATGCGAGCT
ATTAAAAGACGTTGCCCTCTCAGGGTTTCGTCACATCCATGTAATAGATC
TCGACACAATTGATGTTACCAACCTTAACAGACAGTTTTTATTTCGGTCC
ACTGATGTAGGCAAGTCAAAGGCCGAAGTCGCCGCACGGTTTAGCAATTC
ACGAGTGCCAGGATGCAGCGTCATAGCTCATCATGCTAATATCATGGATT
TCGAGAGTGACTTTTATCAACAGTTCAATATCGTTATTGCTGGTCTTGAT
TCTGTCGAAGCGCGTCGGTGGCTGAATGCTATGTTGGTCAGTTTGGTTCG
GTTTGATTCTGATGGTTCAGTCAACCGATCCTCAGTAATACCCCTGATTG
ATGGCGGTACCGAAGGCTTTCAAGGTCAGGCACGAATTATATTTCCGCGA
TTTACATCCTGCTTCGAATGTACGCTCAACTTGTTTCCACCACAACAAAA
TTATCCGTTCTGTACTATTGCAAACACACCAAGACTGCCTGAACATTGCA
TTGAGTATGCAAACGTCATTTTATGGGACAAACTCAAGCCTTTTGGAAAT
GCAAAGCTAGATATGGACAATGTTGAGCACACAACTTGGTTGTACAAAAC
AGCGAAGGCCAGAGCAGAACAATTTGGAATAGGGGGTGTTACCCTACGAT
TAACGCAAGGGGTTGCGAAAAATATCATTCCAGCAGTGGCATCCACAAAT
GCCATTGTAGCCGCTGCTTGTGCTAATGAAGCACTGAAGATGATATCTTG
CATTGCTGCAAACATGGACAATTATATGATGTATAATGGAACAATCGGAG
TATATACATACACTTATAAGAATGAAAAAAGACCCGATTGCCCGGTGTGT
GGAGTTCCTCAACCAAAGACTATGCACGTCGTAGGCACGGATTCTCTCGC
CGAGTTTCTTGAGCAAATAGCCGCAGATCCTGACATTCGCTCCAAGAAAC
CGTTCTTACGTTCAAACACGGGCAAGACCCTGTACGCGTCCACATCCCCA
CTTCGAGAAGCAACACAACTGAATTTGGAAAAGAGGTTAAACGAATTAAT
CACTTCGGGCACGGAGGTCACATTGGCAGACAAAGATTTGCCCTTTATTC
GAACTCTTGTCATTAACTACAAATAG
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Coding sequence (CDS) from alignment at tig00000207_pilon:5773..7098+

>Ggra11057.t1 ID=Ggra11057.t1|Name=Ggra11057.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1326bp|location=Sequence derived from alignment at tig00000207_pilon:5773..7098+ (Gracilaria gracilis GNS1m male)
ATGCAAACTGGAGATGAGTCCCGCGATGTCCCAGGCTGGAAACCGGGGGC
ACCTTCGTGGGGTGGATTAGATCATCTTCTTCGCAATGCAGGACCTCTTT
CCGGAGATCTCAGTGTCGAAGGCGCAGATTCCACAGAGAGGTTCCTGCGT
CAACATTGCAAGGTACTTATCATCGGTGCGGGTGGTCTGGGATGCGAGCT
ATTAAAAGACGTTGCCCTCTCAGGGTTTCGTCACATCCATGTAATAGATC
TCGACACAATTGATGTTACCAACCTTAACAGACAGTTTTTATTTCGGTCC
ACTGATGTAGGCAAGTCAAAGGCCGAAGTCGCCGCACGGTTTAGCAATTC
ACGAGTGCCAGGATGCAGCGTCATAGCTCATCATGCTAATATCATGGATT
TCGAGAGTGACTTTTATCAACAGTTCAATATCGTTATTGCTGGTCTTGAT
TCTGTCGAAGCGCGTCGGTGGCTGAATGCTATGTTGGTCAGTTTGGTTCG
GTTTGATTCTGATGGTTCAGTCAACCGATCCTCAGTAATACCCCTGATTG
ATGGCGGTACCGAAGGCTTTCAAGGTCAGGCACGAATTATATTTCCGCGA
TTTACATCCTGCTTCGAATGTACGCTCAACTTGTTTCCACCACAACAAAA
TTATCCGTTCTGTACTATTGCAAACACACCAAGACTGCCTGAACATTGCA
TTGAGTATGCAAACGTCATTTTATGGGACAAACTCAAGCCTTTTGGAAAT
GCAAAGCTAGATATGGACAATGTTGAGCACACAACTTGGTTGTACAAAAC
AGCGAAGGCCAGAGCAGAACAATTTGGAATAGGGGGTGTTACCCTACGAT
TAACGCAAGGGGTTGCGAAAAATATCATTCCAGCAGTGGCATCCACAAAT
GCCATTGTAGCCGCTGCTTGTGCTAATGAAGCACTGAAGATGATATCTTG
CATTGCTGCAAACATGGACAATTATATGATGTATAATGGAACAATCGGAG
TATATACATACACTTATAAGAATGAAAAAAGACCCGATTGCCCGGTGTGT
GGAGTTCCTCAACCAAAGACTATGCACGTCGTAGGCACGGATTCTCTCGC
CGAGTTTCTTGAGCAAATAGCCGCAGATCCTGACATTCGCTCCAAGAAAC
CGTTCTTACGTTCAAACACGGGCAAGACCCTGTACGCGTCCACATCCCCA
CTTCGAGAAGCAACACAACTGAATTTGGAAAAGAGGTTAAACGAATTAAT
CACTTCGGGCACGGAGGTCACATTGGCAGACAAAGATTTGCCCTTTATTC
GAACTCTTGTCATTAACTACAAATAG
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