Ggra11084.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11084.t1
Unique NameGgra11084.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length205
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:78725..79339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog296587.XP_002508554.1
PFAMsDUF2046
Max annot lvl3041|Chlorophyta
KEGG koko:K09288
KEGG Pathwayko05200,ko05216,map05200,map05216
Evalue0.000657
EggNOG OGsKOG2129@1|root,KOG2129@2759|Eukaryota,3807V@33090|Viridiplantae,34KWU@3041|Chlorophyta
DescriptionUncharacterized conserved protein H4 (DUF2046)
COG categoryS
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11084Ggra11084Gracilaria gracilis GNS1m malegenetig00000207_pilon 78725..79339 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11084.t1.stop1Ggra11084.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 78725..78727 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11084.t1.CDS1Ggra11084.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 78725..79339 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11084.t1.exon1Ggra11084.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 78725..79339 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11084.t1.start1Ggra11084.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 79337..79339 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11084.t1Ggra11084.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 78725..79339 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11084.t1 ID=Ggra11084.t1|Name=Ggra11084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=205bp
MSDEASREHDASELQIRELRRQLSALKLDLAREKHRRQAAEEHVRELRRE
STLNQIRVEEEEEMISNKLMKRLSELKHEKEQIARASETDSEYVTNSLSQ
RLEELQRQKHRIIAAAEEENEYIVNRLNKELDALRSEKHELERKVQRLSR
STTPGALTPTSSPALSLRSVDGSLSRNGSYRLSAPASTFAQSALHQTANP
SPPQ*
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spliced messenger RNA

>Ggra11084.t1 ID=Ggra11084.t1|Name=Ggra11084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000207_pilon:78725..79339- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTGACGAAGCTTCGCGTGAGCACGACGCTTCCGAGCTGCAGATCCG
CGAGCTGCGCCGACAGCTGTCCGCGCTCAAGCTCGACCTGGCTCGCGAGA
AGCACCGCCGACAGGCCGCTGAGGAGCATGTCCGCGAGCTGCGTCGCGAG
TCCACGCTCAATCAGATCCGCGTCGAGGAGGAGGAGGAGATGATTTCCAA
CAAACTCATGAAGCGACTATCCGAGCTCAAGCACGAGAAGGAGCAGATTG
CGCGCGCCTCCGAGACAGACTCCGAGTATGTCACCAACTCGCTCAGCCAG
CGTCTGGAGGAGCTGCAGCGTCAGAAGCACCGCATCATTGCCGCCGCCGA
GGAGGAGAATGAGTACATTGTCAATCGCCTCAACAAGGAGCTGGACGCCT
TGAGGAGCGAGAAGCATGAGCTGGAGAGAAAGGTGCAGCGCTTGTCTCGT
TCCACAACTCCGGGAGCTCTTACTCCCACCTCATCTCCGGCGCTCAGCTT
GCGTTCCGTCGATGGCTCGCTGTCCAGGAACGGATCGTACAGACTCTCTG
CGCCTGCCTCCACCTTTGCACAGTCTGCCTTGCACCAAACTGCCAACCCA
TCGCCACCGCAATGA
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protein sequence of Ggra11084.t1

>Ggra11084.t1 ID=Ggra11084.t1|Name=Ggra11084.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=205bp
MSDEASREHDASELQIRELRRQLSALKLDLAREKHRRQAAEEHVRELRRE
STLNQIRVEEEEEMISNKLMKRLSELKHEKEQIARASETDSEYVTNSLSQ
RLEELQRQKHRIIAAAEEENEYIVNRLNKELDALRSEKHELERKVQRLSR
STTPGALTPTSSPALSLRSVDGSLSRNGSYRLSAPASTFAQSALHQTANP
SPPQ*
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mRNA from alignment at tig00000207_pilon:78725..79339-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11084.t1 ID=Ggra11084.t1|Name=Ggra11084.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=615bp|location=Sequence derived from alignment at tig00000207_pilon:78725..79339- (Gracilaria gracilis GNS1m male)
ATGAGTGACGAAGCTTCGCGTGAGCACGACGCTTCCGAGCTGCAGATCCG
CGAGCTGCGCCGACAGCTGTCCGCGCTCAAGCTCGACCTGGCTCGCGAGA
AGCACCGCCGACAGGCCGCTGAGGAGCATGTCCGCGAGCTGCGTCGCGAG
TCCACGCTCAATCAGATCCGCGTCGAGGAGGAGGAGGAGATGATTTCCAA
CAAACTCATGAAGCGACTATCCGAGCTCAAGCACGAGAAGGAGCAGATTG
CGCGCGCCTCCGAGACAGACTCCGAGTATGTCACCAACTCGCTCAGCCAG
CGTCTGGAGGAGCTGCAGCGTCAGAAGCACCGCATCATTGCCGCCGCCGA
GGAGGAGAATGAGTACATTGTCAATCGCCTCAACAAGGAGCTGGACGCCT
TGAGGAGCGAGAAGCATGAGCTGGAGAGAAAGGTGCAGCGCTTGTCTCGT
TCCACAACTCCGGGAGCTCTTACTCCCACCTCATCTCCGGCGCTCAGCTT
GCGTTCCGTCGATGGCTCGCTGTCCAGGAACGGATCGTACAGACTCTCTG
CGCCTGCCTCCACCTTTGCACAGTCTGCCTTGCACCAAACTGCCAACCCA
TCGCCACCGCAATGA
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Coding sequence (CDS) from alignment at tig00000207_pilon:78725..79339-

>Ggra11084.t1 ID=Ggra11084.t1|Name=Ggra11084.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=615bp|location=Sequence derived from alignment at tig00000207_pilon:78725..79339- (Gracilaria gracilis GNS1m male)
ATGAGTGACGAAGCTTCGCGTGAGCACGACGCTTCCGAGCTGCAGATCCG
CGAGCTGCGCCGACAGCTGTCCGCGCTCAAGCTCGACCTGGCTCGCGAGA
AGCACCGCCGACAGGCCGCTGAGGAGCATGTCCGCGAGCTGCGTCGCGAG
TCCACGCTCAATCAGATCCGCGTCGAGGAGGAGGAGGAGATGATTTCCAA
CAAACTCATGAAGCGACTATCCGAGCTCAAGCACGAGAAGGAGCAGATTG
CGCGCGCCTCCGAGACAGACTCCGAGTATGTCACCAACTCGCTCAGCCAG
CGTCTGGAGGAGCTGCAGCGTCAGAAGCACCGCATCATTGCCGCCGCCGA
GGAGGAGAATGAGTACATTGTCAATCGCCTCAACAAGGAGCTGGACGCCT
TGAGGAGCGAGAAGCATGAGCTGGAGAGAAAGGTGCAGCGCTTGTCTCGT
TCCACAACTCCGGGAGCTCTTACTCCCACCTCATCTCCGGCGCTCAGCTT
GCGTTCCGTCGATGGCTCGCTGTCCAGGAACGGATCGTACAGACTCTCTG
CGCCTGCCTCCACCTTTGCACAGTCTGCCTTGCACCAAACTGCCAACCCA
TCGCCACCGCAATGA
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