Ggra10218.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10218.t1
Unique NameGgra10218.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:122220..123782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog55529.EKX43208
Preferred nameDDX52
PFAMsDEAD,Helicase_C
Max annot lvl2759|Eukaryota
KEGG koko:K14779,ko:K14807
GOsGO:0000166,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006403,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010467,GO:0010501,GO:0016070,GO:0016072,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0022613,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042274,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0048254,GO:0051179,GO:0070013,GO:0070035,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097367,GO:0140098,GO:1901265,GO:1901360,GO:1901363,GO:1990904
Evalue3.54e-80
EggNOG OGsKOG0344@1|root,KOG0344@2759|Eukaryota
EC3.6.4.13
Descriptionhelicase activity
COG categoryL
BRITEko00000,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10218Ggra10218Gracilaria gracilis GNS1m malegenetig00000016_pilon 122220..123782 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10218.t1Ggra10218.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 122220..123782 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10218.t1.start1Ggra10218.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 122220..122222 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10218.t1.CDS1Ggra10218.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 122220..122474 +
Ggra10218.t1.CDS2Ggra10218.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000016_pilon 122577..123782 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10218.t1.exon1Ggra10218.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 122220..122474 +
Ggra10218.t1.exon2Ggra10218.t1.exon2Gracilaria gracilis GNS1m maleexontig00000016_pilon 122577..123782 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10218.t1.intron1Ggra10218.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000016_pilon 122475..122576 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10218.t1.stop1Ggra10218.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 123780..123782 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10218.t1 ID=Ggra10218.t1|Name=Ggra10218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=487bp
MQHDPLRALLRGCSVPSASRASIRPPSSTTTPKSSHLDFFNQKRSANDSA
SPKLSSSFQKLVPNEKIQAALVKLEITSPTPVQQRQQRVKQPHALILAPT
RELAEQISRVLTRLLQLCHVKAHVRTLTTRASVAAWKAAPKAVHFIIATP
RRLLAAAEEIRFSAPSYLVLDEADELFDERFLPQLDQVLHVCGARAADKP
RMHLFSATIPPVVAELAASLMKDVKRVTVGASGFGGSFAVDEAVSHIDQR
FVFVGGRGEQGKVMAVRNLIRNGIKPPVLVFVQTKDRAADLFRELVFDGV
HVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINY
DMPSSGAAYVHRIGRTGRNGKSGHAITLFTEEDRKVVGGVVRVASASGAD
VPDWLLRLGERVRRDEVKRLEKRPPKRGRVGGPNRASLKHGGSKKRRTAP
RDEQHKSEADEEADEEADEEADEEADEEADDDGRAD*
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spliced messenger RNA

>Ggra10218.t1 ID=Ggra10218.t1|Name=Ggra10218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1461bp|location=Sequence derived from alignment at tig00000016_pilon:122220..123782+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACACGATCCGCTACGCGCGCTGCTTCGCGGCTGCAGCGTTCCCTC
AGCAAGCCGAGCCTCCATCAGGCCACCTTCTTCTACGACGACGCCCAAGT
CCTCACACCTCGACTTCTTCAACCAAAAGCGCTCCGCGAATGATTCCGCT
TCGCCCAAACTATCCTCGTCGTTCCAGAAACTGGTGCCAAACGAAAAGAT
TCAAGCAGCACTGGTCAAGCTGGAGATAACGTCACCAACCCCTGTTCAAC
AACGCcagcagcgcgtcaaaCAGCCTCACGCGCTCATTCTAGCGCCCACT
CGCGAGCTTGCAGAGCAGATATCGAGGGTTCTGACGCGCCTGTTGCAACT
ATGTCATGTGAAGGCCCATGTGCGCACACTCACGACGCGCGCGTCCGTGG
CGGCGTGGAAAGCGGCGCCCAAGGCGGTGCACTTTATCATTGCCACGCCG
CGTCGATTACTAGCGGCTGCTGAAGAGATTCGCTTCTCCGCACCCAGCTA
CCTGGTGTTGGACGAGGCGGACGAGCTTTTCGACGAACGCTTTTTGCCGC
AGTTGGATCAAGTGCTGCATGTGTGTGGCGCGCGTGCGGCGGATAAGCCG
AGGATGCATCTGTTCTCCGCTACCATCCCGCCCGTGGTGGCGGAGTTGGC
GGCGTCATTGATGAAGGACGTGAAGAGAGTGACGGTGGGTGCAAGCGGCT
TTGGCGGCTCGTTCGCGGTGGACGAGGCGGTGAGTCATATCGATCAACGC
TTCGTATTCGTGGGCGGACGAGGCGAACAAGGCAAGGTGATGGCGGTACG
AAACCTGATTCGAAACGGTATCAAACCGCCGGTGTTGGTGTTCGTGCAGA
CCAAAGATCGCGCGGCAGACCTGTTTCGAGAGCTGGTGTTCGACGGCGTG
CACGTGGATGCGATCCACGCGGACCGCACCGCTGCAGCCAGAGCATCGGC
CGTGGCGAGGTTCCGCGCAGGCAAGATCTGGGTGCTGATCGCGACGGACG
TGCTGGCGAGAGGACTGGACTTTCTGGCGGTACAGACGGTGATCAACTAT
GACATGCCTTCATCGGGCGCGGCGTATGTGCACCGCATTGGACGTACCGG
GCGTAACGGCAAGTCGGGACACGCCATCACGTTGTTCACGGAGGAGGATC
GCAAGGTGGTGGGCGGCGTGGTTCGAGTGGCCAGCGCGAGCGGAGCGGAC
GTGCCGGACTGGCTGCTGCGACTGGGCGAGCGGGTGCGGCGCGACGAGGT
GAAGCGGCTGGAGAAACGGCCGCCGAAGAGAGGGCGGGTGGGCGGCCCCA
ATCGCGCCAGCCTGAAGCACGGCGGCAGCAAGAAGCGGCGGACGGCGCCA
CGCGATGAGCAACACAAGTCGGAGGCGGACGAGGAGGCGGACGAGGAGGC
GGACGAGGAGGCGGACGAGGAGGCGGACGAGGAGGCGGATGACGACGGAC
GGGCAGATTGA
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protein sequence of Ggra10218.t1

>Ggra10218.t1 ID=Ggra10218.t1|Name=Ggra10218.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=487bp
MQHDPLRALLRGCSVPSASRASIRPPSSTTTPKSSHLDFFNQKRSANDSA
SPKLSSSFQKLVPNEKIQAALVKLEITSPTPVQQRQQRVKQPHALILAPT
RELAEQISRVLTRLLQLCHVKAHVRTLTTRASVAAWKAAPKAVHFIIATP
RRLLAAAEEIRFSAPSYLVLDEADELFDERFLPQLDQVLHVCGARAADKP
RMHLFSATIPPVVAELAASLMKDVKRVTVGASGFGGSFAVDEAVSHIDQR
FVFVGGRGEQGKVMAVRNLIRNGIKPPVLVFVQTKDRAADLFRELVFDGV
HVDAIHADRTAAARASAVARFRAGKIWVLIATDVLARGLDFLAVQTVINY
DMPSSGAAYVHRIGRTGRNGKSGHAITLFTEEDRKVVGGVVRVASASGAD
VPDWLLRLGERVRRDEVKRLEKRPPKRGRVGGPNRASLKHGGSKKRRTAP
RDEQHKSEADEEADEEADEEADEEADEEADDDGRAD*
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mRNA from alignment at tig00000016_pilon:122220..123782+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10218.t1 ID=Ggra10218.t1|Name=Ggra10218.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1563bp|location=Sequence derived from alignment at tig00000016_pilon:122220..123782+ (Gracilaria gracilis GNS1m male)
ATGCAACACGATCCGCTACGCGCGCTGCTTCGCGGCTGCAGCGTTCCCTC
AGCAAGCCGAGCCTCCATCAGGCCACCTTCTTCTACGACGACGCCCAAGT
CCTCACACCTCGACTTCTTCAACCAAAAGCGCTCCGCGAATGATTCCGCT
TCGCCCAAACTATCCTCGTCGTTCCAGAAACTGGTGCCAAACGAAAAGAT
TCAAGCAGCACTGGTCAAGCTGGAGATAACGTCACCAACCCCTGTTCAAC
AACGCGTAATTCCcttctttcacagccacgacgtgctggccgtggcgccc
accggctctggcaaaacgctgtgttaccttcttccactcgtggaggccct
cgcacagcagcagcgcgtcaaaCAGCCTCACGCGCTCATTCTAGCGCCCA
CTCGCGAGCTTGCAGAGCAGATATCGAGGGTTCTGACGCGCCTGTTGCAA
CTATGTCATGTGAAGGCCCATGTGCGCACACTCACGACGCGCGCGTCCGT
GGCGGCGTGGAAAGCGGCGCCCAAGGCGGTGCACTTTATCATTGCCACGC
CGCGTCGATTACTAGCGGCTGCTGAAGAGATTCGCTTCTCCGCACCCAGC
TACCTGGTGTTGGACGAGGCGGACGAGCTTTTCGACGAACGCTTTTTGCC
GCAGTTGGATCAAGTGCTGCATGTGTGTGGCGCGCGTGCGGCGGATAAGC
CGAGGATGCATCTGTTCTCCGCTACCATCCCGCCCGTGGTGGCGGAGTTG
GCGGCGTCATTGATGAAGGACGTGAAGAGAGTGACGGTGGGTGCAAGCGG
CTTTGGCGGCTCGTTCGCGGTGGACGAGGCGGTGAGTCATATCGATCAAC
GCTTCGTATTCGTGGGCGGACGAGGCGAACAAGGCAAGGTGATGGCGGTA
CGAAACCTGATTCGAAACGGTATCAAACCGCCGGTGTTGGTGTTCGTGCA
GACCAAAGATCGCGCGGCAGACCTGTTTCGAGAGCTGGTGTTCGACGGCG
TGCACGTGGATGCGATCCACGCGGACCGCACCGCTGCAGCCAGAGCATCG
GCCGTGGCGAGGTTCCGCGCAGGCAAGATCTGGGTGCTGATCGCGACGGA
CGTGCTGGCGAGAGGACTGGACTTTCTGGCGGTACAGACGGTGATCAACT
ATGACATGCCTTCATCGGGCGCGGCGTATGTGCACCGCATTGGACGTACC
GGGCGTAACGGCAAGTCGGGACACGCCATCACGTTGTTCACGGAGGAGGA
TCGCAAGGTGGTGGGCGGCGTGGTTCGAGTGGCCAGCGCGAGCGGAGCGG
ACGTGCCGGACTGGCTGCTGCGACTGGGCGAGCGGGTGCGGCGCGACGAG
GTGAAGCGGCTGGAGAAACGGCCGCCGAAGAGAGGGCGGGTGGGCGGCCC
CAATCGCGCCAGCCTGAAGCACGGCGGCAGCAAGAAGCGGCGGACGGCGC
CACGCGATGAGCAACACAAGTCGGAGGCGGACGAGGAGGCGGACGAGGAG
GCGGACGAGGAGGCGGACGAGGAGGCGGACGAGGAGGCGGATGACGACGG
ACGGGCAGATTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:122220..123782+

>Ggra10218.t1 ID=Ggra10218.t1|Name=Ggra10218.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1461bp|location=Sequence derived from alignment at tig00000016_pilon:122220..123782+ (Gracilaria gracilis GNS1m male)
ATGCAACACGATCCGCTACGCGCGCTGCTTCGCGGCTGCAGCGTTCCCTC
AGCAAGCCGAGCCTCCATCAGGCCACCTTCTTCTACGACGACGCCCAAGT
CCTCACACCTCGACTTCTTCAACCAAAAGCGCTCCGCGAATGATTCCGCT
TCGCCCAAACTATCCTCGTCGTTCCAGAAACTGGTGCCAAACGAAAAGAT
TCAAGCAGCACTGGTCAAGCTGGAGATAACGTCACCAACCCCTGTTCAAC
AACGCcagcagcgcgtcaaaCAGCCTCACGCGCTCATTCTAGCGCCCACT
CGCGAGCTTGCAGAGCAGATATCGAGGGTTCTGACGCGCCTGTTGCAACT
ATGTCATGTGAAGGCCCATGTGCGCACACTCACGACGCGCGCGTCCGTGG
CGGCGTGGAAAGCGGCGCCCAAGGCGGTGCACTTTATCATTGCCACGCCG
CGTCGATTACTAGCGGCTGCTGAAGAGATTCGCTTCTCCGCACCCAGCTA
CCTGGTGTTGGACGAGGCGGACGAGCTTTTCGACGAACGCTTTTTGCCGC
AGTTGGATCAAGTGCTGCATGTGTGTGGCGCGCGTGCGGCGGATAAGCCG
AGGATGCATCTGTTCTCCGCTACCATCCCGCCCGTGGTGGCGGAGTTGGC
GGCGTCATTGATGAAGGACGTGAAGAGAGTGACGGTGGGTGCAAGCGGCT
TTGGCGGCTCGTTCGCGGTGGACGAGGCGGTGAGTCATATCGATCAACGC
TTCGTATTCGTGGGCGGACGAGGCGAACAAGGCAAGGTGATGGCGGTACG
AAACCTGATTCGAAACGGTATCAAACCGCCGGTGTTGGTGTTCGTGCAGA
CCAAAGATCGCGCGGCAGACCTGTTTCGAGAGCTGGTGTTCGACGGCGTG
CACGTGGATGCGATCCACGCGGACCGCACCGCTGCAGCCAGAGCATCGGC
CGTGGCGAGGTTCCGCGCAGGCAAGATCTGGGTGCTGATCGCGACGGACG
TGCTGGCGAGAGGACTGGACTTTCTGGCGGTACAGACGGTGATCAACTAT
GACATGCCTTCATCGGGCGCGGCGTATGTGCACCGCATTGGACGTACCGG
GCGTAACGGCAAGTCGGGACACGCCATCACGTTGTTCACGGAGGAGGATC
GCAAGGTGGTGGGCGGCGTGGTTCGAGTGGCCAGCGCGAGCGGAGCGGAC
GTGCCGGACTGGCTGCTGCGACTGGGCGAGCGGGTGCGGCGCGACGAGGT
GAAGCGGCTGGAGAAACGGCCGCCGAAGAGAGGGCGGGTGGGCGGCCCCA
ATCGCGCCAGCCTGAAGCACGGCGGCAGCAAGAAGCGGCGGACGGCGCCA
CGCGATGAGCAACACAAGTCGGAGGCGGACGAGGAGGCGGACGAGGAGGC
GGACGAGGAGGCGGACGAGGAGGCGGACGAGGAGGCGGATGACGACGGAC
GGGCAGATTGA
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