Ggra11079.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11079.t1
Unique Name	Ggra11079.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	326

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:63716..64693 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	861299.J421_6257
Preferred name	yyaK
PFAMs	Abi
Max annot lvl	2\|Bacteria
KEGG ko	ko:K07052
Evalue	3.32e-18
EggNOG OGs	COG1266@1\|root,COG1266@2\|Bacteria
Description	CAAX protease self-immunity
COG category	V
BRITE	ko00000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11079	Ggra11079	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 63716..64693 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11079.t1.start1	Ggra11079.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 63716..63718 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11079.t1.CDS1	Ggra11079.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 63716..64693 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11079.t1.exon1	Ggra11079.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 63716..64693 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11079.t1.stop1	Ggra11079.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 64691..64693 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11079.t1	Ggra11079.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 63716..64693 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:63716..64693+
coding sequence from alignment at tig00000207_pilon:63716..64693+

mRNA sequence

>Ggra11079.t1 ID=Ggra11079.t1|Name=Ggra11079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=326bp
MDDPNEFPSMPEPGGRGHAMEATASMIWTLLFLAYSSSTFLSEFSRGWAA
VWTIVLVILPITLAGLPKVFERKPGAVTNLIVYLAYGLVPSFIQLMQHGD
ISSMASEAADLITVLIIWLPLEFNLLAAELSATGRVTAWGQLTAALNIIN
IFSILRPLSDVPKARELGYSFKFNVQDVFYGTLFAALYTITGMVLATLIR
FARFTRPSRMKPEREIPTIIGVYMLSVTDELLFRGMMQNMFEQRLGPNSP
IALVLAALAFGMTRWRKPKQGFIPPNLRYVAVATVCGLFSGLAWRITGKV
TASAITHAGGDYLMWHVFLRKTNET*

spliced messenger RNA

>Ggra11079.t1 ID=Ggra11079.t1|Name=Ggra11079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000207_pilon:63716..64693+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATGATCCAAATGAATTCCCCTCCATGCCTGAGCCAGGTGGAAGGGG
GCATGCTATGGAGGCAACAGCTTCTATGATTTGGACTCTGCTGTTTCTAG
CATATTCATCGAGCACATTTCTTAGCGAATTCAGTAGAGGTTGGGCAGCT
GTGTGGACTATCGTCCTGGTCATCTTGCCAATCACATTAGCGGGCTTGCC
GAAAGTCTTTGAACGCAAACCAGGGGCTGTTACCAACCTCATTGTATACT
TAGCTTACGGCCTGGTCCCATCATTTATTCAACTTATGCAACACGGGGAT
ATTAGTTCGATGGCTTCCGAAGCTGCAGATCTCATCACCGTTCTTATCAT
TTGGCTCCCTTTAGAATTCAATTTGCTTGCGGCGGAATTATCAGCAACAG
GAAGGGTAACTGCATGGGGTCAATTAACAGCTGCCCTTAATATCATCAAC
ATTTTCTCTATTCTTCGACCTCTCTCCGATGTACCCAAGGCTCGCGAACT
TGGCTATTCTTTCAAGTTCAACGTCCAAGACGTATTCTACGGGACCTTGT
TTGCGGCCCTGTATACCATCACCGGAATGGTACTGGCGACCCTAATCAGG
TTTGCTCGGTTTACCCGTCCTAGTCGTATGAAACCGGAACGTGAAATTCC
AACGATAATCGGTGTGTACATGCTCTCTGTTACTGATGAATTGCTATTTC
GAGGAATGATGCAAAACATGTTTGAGCAACGTCTCGGTCCAAACTCTCCT
ATTGCGCTTGTCCTTGCCGCTCTGGCATTCGGAATGACTCGTTGGCGAAA
ACCCAAACAAGGGTTCATCCCTCCTAACCTACGATACGTAGCCGTTGCTA
CAGTGTGTGGCCTATTCAGCGGTCTAGCATGGCGTATAACAGGAAAGGTA
ACAGCCTCTGCCATTACGCACGCTGGAGGTGATTACTTGATGTGGCATGT
CTTTTTAAGGAAAACGAACGAGACATAA

protein sequence of Ggra11079.t1

>Ggra11079.t1 ID=Ggra11079.t1|Name=Ggra11079.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=326bp
MDDPNEFPSMPEPGGRGHAMEATASMIWTLLFLAYSSSTFLSEFSRGWAA
VWTIVLVILPITLAGLPKVFERKPGAVTNLIVYLAYGLVPSFIQLMQHGD
ISSMASEAADLITVLIIWLPLEFNLLAAELSATGRVTAWGQLTAALNIIN
IFSILRPLSDVPKARELGYSFKFNVQDVFYGTLFAALYTITGMVLATLIR
FARFTRPSRMKPEREIPTIIGVYMLSVTDELLFRGMMQNMFEQRLGPNSP
IALVLAALAFGMTRWRKPKQGFIPPNLRYVAVATVCGLFSGLAWRITGKV
TASAITHAGGDYLMWHVFLRKTNET*

mRNA from alignment at tig00000207_pilon:63716..64693+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11079.t1 ID=Ggra11079.t1|Name=Ggra11079.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=978bp|location=Sequence derived from alignment at tig00000207_pilon:63716..64693+ (Gracilaria gracilis GNS1m male)
ATGGATGATCCAAATGAATTCCCCTCCATGCCTGAGCCAGGTGGAAGGGG
GCATGCTATGGAGGCAACAGCTTCTATGATTTGGACTCTGCTGTTTCTAG
CATATTCATCGAGCACATTTCTTAGCGAATTCAGTAGAGGTTGGGCAGCT
GTGTGGACTATCGTCCTGGTCATCTTGCCAATCACATTAGCGGGCTTGCC
GAAAGTCTTTGAACGCAAACCAGGGGCTGTTACCAACCTCATTGTATACT
TAGCTTACGGCCTGGTCCCATCATTTATTCAACTTATGCAACACGGGGAT
ATTAGTTCGATGGCTTCCGAAGCTGCAGATCTCATCACCGTTCTTATCAT
TTGGCTCCCTTTAGAATTCAATTTGCTTGCGGCGGAATTATCAGCAACAG
GAAGGGTAACTGCATGGGGTCAATTAACAGCTGCCCTTAATATCATCAAC
ATTTTCTCTATTCTTCGACCTCTCTCCGATGTACCCAAGGCTCGCGAACT
TGGCTATTCTTTCAAGTTCAACGTCCAAGACGTATTCTACGGGACCTTGT
TTGCGGCCCTGTATACCATCACCGGAATGGTACTGGCGACCCTAATCAGG
TTTGCTCGGTTTACCCGTCCTAGTCGTATGAAACCGGAACGTGAAATTCC
AACGATAATCGGTGTGTACATGCTCTCTGTTACTGATGAATTGCTATTTC
GAGGAATGATGCAAAACATGTTTGAGCAACGTCTCGGTCCAAACTCTCCT
ATTGCGCTTGTCCTTGCCGCTCTGGCATTCGGAATGACTCGTTGGCGAAA
ACCCAAACAAGGGTTCATCCCTCCTAACCTACGATACGTAGCCGTTGCTA
CAGTGTGTGGCCTATTCAGCGGTCTAGCATGGCGTATAACAGGAAAGGTA
ACAGCCTCTGCCATTACGCACGCTGGAGGTGATTACTTGATGTGGCATGT
CTTTTTAAGGAAAACGAACGAGACATAA

Coding sequence (CDS) from alignment at tig00000207_pilon:63716..64693+

>Ggra11079.t1 ID=Ggra11079.t1|Name=Ggra11079.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=978bp|location=Sequence derived from alignment at tig00000207_pilon:63716..64693+ (Gracilaria gracilis GNS1m male)
ATGGATGATCCAAATGAATTCCCCTCCATGCCTGAGCCAGGTGGAAGGGG
GCATGCTATGGAGGCAACAGCTTCTATGATTTGGACTCTGCTGTTTCTAG
CATATTCATCGAGCACATTTCTTAGCGAATTCAGTAGAGGTTGGGCAGCT
GTGTGGACTATCGTCCTGGTCATCTTGCCAATCACATTAGCGGGCTTGCC
GAAAGTCTTTGAACGCAAACCAGGGGCTGTTACCAACCTCATTGTATACT
TAGCTTACGGCCTGGTCCCATCATTTATTCAACTTATGCAACACGGGGAT
ATTAGTTCGATGGCTTCCGAAGCTGCAGATCTCATCACCGTTCTTATCAT
TTGGCTCCCTTTAGAATTCAATTTGCTTGCGGCGGAATTATCAGCAACAG
GAAGGGTAACTGCATGGGGTCAATTAACAGCTGCCCTTAATATCATCAAC
ATTTTCTCTATTCTTCGACCTCTCTCCGATGTACCCAAGGCTCGCGAACT
TGGCTATTCTTTCAAGTTCAACGTCCAAGACGTATTCTACGGGACCTTGT
TTGCGGCCCTGTATACCATCACCGGAATGGTACTGGCGACCCTAATCAGG
TTTGCTCGGTTTACCCGTCCTAGTCGTATGAAACCGGAACGTGAAATTCC
AACGATAATCGGTGTGTACATGCTCTCTGTTACTGATGAATTGCTATTTC
GAGGAATGATGCAAAACATGTTTGAGCAACGTCTCGGTCCAAACTCTCCT
ATTGCGCTTGTCCTTGCCGCTCTGGCATTCGGAATGACTCGTTGGCGAAA
ACCCAAACAAGGGTTCATCCCTCCTAACCTACGATACGTAGCCGTTGCTA
CAGTGTGTGGCCTATTCAGCGGTCTAGCATGGCGTATAACAGGAAAGGTA
ACAGCCTCTGCCATTACGCACGCTGGAGGTGATTACTTGATGTGGCATGT
CTTTTTAAGGAAAACGAACGAGACATAA