Ggra11081.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra11081.t1
Unique Name	Ggra11081.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	764

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000207_pilon	contig	tig00000207_pilon:66614..68905 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	314271.RB2654_08177
PFAMs	Glyco_transf_7C
Max annot lvl	28211\|Alphaproteobacteria
Evalue	4.72e-73
EggNOG OGs	COG1216@1\|root,COG1216@2\|Bacteria,1MZBS@1224\|Proteobacteria,2UEUD@28211\|Alphaproteobacteria
Description	N-terminal domain of galactosyltransferase
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra11081	Ggra11081	Gracilaria gracilis GNS1m male	gene	tig00000207_pilon 66614..68905 -

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11081.t1.stop1	Ggra11081.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000207_pilon 66614..66616 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11081.t1.CDS1	Ggra11081.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000207_pilon 66614..68905 -

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11081.t1.exon1	Ggra11081.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000207_pilon 66614..68905 -

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11081.t1.start1	Ggra11081.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000207_pilon 68903..68905 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra11081.t1	Ggra11081.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000207_pilon 66614..68905 -

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000207_pilon:66614..68905-
coding sequence from alignment at tig00000207_pilon:66614..68905-

mRNA sequence

>Ggra11081.t1 ID=Ggra11081.t1|Name=Ggra11081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=764bp
MVAFRSLRGTGDIEAEMPPPTLWRHSRTPSVGNIPNLQSNFPSVKFKPML
IQLLLMSVLIFYIMLPSHTVRRISSKASLSSVSEVGLKVISSVSNAASSV
IADARKEEGVGIVAACMNRQETLEKVLPTWLAVNGVEEIIIVDWGSDPPL
RSIVKPERDPRLHLYRVNKESSWVLSRAYNLALNMSSKEHVIRTDCDYSL
HPNVLEAHNLSNTHAGFYSGNWELARNENEVHLNGAMVLKRNVFWNVGGY
DERIQTYGWDDEDLYTRLQASKMRKLNVSYDHVKHVSHGDGKRAQRGVKF
AQVQIDLNQLLLEKLPQWSSSFLNANDSSQYEIVSEDGTGYHELQAIHVP
KALRHLVDAKVYEQAWAMALGRRLADDYQVPWDVLESTDCDNKEKMLRKL
MTLQDDLERERTESQSNGNETKALIPSKARLLLVHCMHGLGNRLRAIGSA
LAFAKNTRRVPVIIWESDAHIAAEFDALFNTSDIVLLNRFIPKWPFKDLH
QYDNSWNEFKFYNYMEMEEGGNKGELIKNDPNKHLYYKGAYIMEAPEYSW
WEVDNEQLRNLKPVGMVQNKLRELEKNGLSSCIGVHIRNRTLEKDIKNVD
FNQEYGSEAASTMEHWRTMSSYRTFVTEMERILKEEDKDVRFYVATDTFE
ILAIMNEKFPGKILRTERKCDDRDSECVKYAVIDMYALSKTKRLLGSNWS
SYTEMAERLGSLKASLAGQDFGAQSNSHANSHAKSTSAEAGKSKSDEEQL
AEEKDRMLDSGRE*

spliced messenger RNA

>Ggra11081.t1 ID=Ggra11081.t1|Name=Ggra11081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000207_pilon:66614..68905- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTGGCCTTCCGATCTCTGCGAGGAACAGGTGATATCGAGGCTGAAAT
GCCTCCACCAACACTTTGGCGTCATTCGCGAACGCCTTCAGTGGGAAATA
TTCCGAACTTGCAAAGTAATTTCCCATCTGTTAAGTTCAAACCAATGCTA
ATACAACTGCTTCTCATGTCCGTTCTTATCTTCTATATTATGCTACCTTC
ACATACTGTGCGAAGAATATCTTCAAAAGCATCATTGTCATCTGTATCTG
AAGTTGGATTAAAGGTAATATCAAGTGTTTCGAACGCTGCCTCTTCGGTC
ATCGCGGATGCACGCAAGGAGGAAGGAGTTGGTATCGTTGCAGCATGTAT
GAACCGCCAAGAAACATTGGAAAAAGTTCTTCCCACTTGGCTTGCTGTAA
ACGGAGTAGAAGAGATCATTATCGTTGATTGGGGAAGTGACCCGCCTCTG
CGATCCATCGTTAAACCTGAGCGCGATCCCCGCCTTCATTTATATCGAGT
CAACAAAGAATCATCATGGGTACTCTCCCGAGCTTACAATCTCGCTCTAA
ATATGTCTTCGAAGGAGCATGTTATTCGAACCGATTGCGACTATTCACTA
CATCCAAATGTTTTAGAGGCCCACAATCTAAGCAATACTCATGCCGGGTT
CTATTCGGGTAACTGGGAGCTTGCCAGAAATGAAAATGAAGTACATCTGA
ACGGTGCAATGGTCCTAAAAAGAAATGTGTTTTGGAACGTTGGGGGTTAT
GACGAACGAATCCAAACATACGGATGGGATGATGAAGACTTGTACACTCG
CTTACAGGCCAGTAAGATGAGAAAGCTTAATGTTAGTTACGATCATGTGA
AACATGTTTCGCACGGTGATGGGAAGAGAGCGCAACGTGGCGTCAAGTTT
GCTCAAGTACAAATTGACTTGAATCAACTTCTTCTCGAAAAGTTACCACA
ATGGTCGTCCTCTTTTCTGAATGCAAACGATTCTTCACAATATGAGATTG
TGTCCGAAGATGGTACAGGCTACCATGAACTGCAAGCGATTCATGTCCCG
AAAGCATTACGGCATCTTGTCGATGCTAAAGTATACGAACAGGCGTGGGC
TATGGCTCTAGGTCGCCGTCTCGCTGATGATTATCAAGTGCCATGGGATG
TACTAGAAAGCACCGATTGTGATAACAAAGAGAAAATGTTACGTAAACTT
ATGACTCTTCAGGATGACCTCGAACGGGAACGAACGGAATCTCAATCGAA
TGGAAATGAAACGAAAGCCTTAATTCCTTCTAAGGCGCGACTCCTTTTGG
TACATTGCATGCATGGTCTTGGAAACAGATTAAGGGCCATTGGAAGTGCC
CTAGCGTTTGCCAAGAATACGAGAAGAGTTCCGGTTATAATATGGGAGAG
CGATGCTCATATTGCTGCGGAATTTGATGCCTTGTTCAACACATCCGATA
TTGTTCTTCTAAATCGATTCATTCCGAAGTGGCCCTTCAAAGATCTACAT
CAGTATGACAACTCCTGGAACGAATTCAAGTTCTATAACTATATGGAAAT
GGAAGAGGGTGGAAACAAGGGTGAACTGATCAAGAACGACCCGAACAAGC
ATTTGTATTACAAAGGGGCTTACATTATGGAAGCCCCAGAATACTCATGG
TGGGAAGTAGATAATGAGCAGCTAAGGAATCTGAAACCCGTTGGAATGGT
GCAGAACAAGTTGAGAGAACTGGAGAAGAACGGCCTGTCAAGCTGTATTG
GGGTTCACATCCGCAATAGAACTCTTGAAAAGGATATAAAGAATGTAGAT
TTCAACCAGGAATACGGATCAGAAGCGGCTTCTACGATGGAACATTGGCG
CACCATGAGTTCCTACAGGACTTTCGTAACAGAAATGGAACGCATTCTGA
AGGAGGAGGACAAGGATGTGAGGTTTTACGTTGCCACAGATACGTTTGAA
ATTCTCGCAATCATGAATGAAAAGTTCCCGGGGAAGATTCTTCGCACTGA
ACGGAAATGTGACGACAGAGATTCTGAATGCGTAAAATATGCCGTTATCG
ACATGTACGCCTTGAGTAAGACTAAGAGGCTGCTTGGTTCGAATTGGAGC
AGTTACACTGAGATGGCAGAAAGGCTGGGAAGTCTCAAAGCAAGTCTGGC
TGGTCAGGATTTCGGAGCTCAGTCGAACTCTCATGCGAACTCTCATGCGA
AAAGCACTTCTGCAGAAGCAGGAAAGAGCAAATCAGACGAAGAACAGCTA
GCTGAAGAGAAAGATAGAATGCTGGACTCAGGTCGAGAATGA

protein sequence of Ggra11081.t1

>Ggra11081.t1 ID=Ggra11081.t1|Name=Ggra11081.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=764bp
MVAFRSLRGTGDIEAEMPPPTLWRHSRTPSVGNIPNLQSNFPSVKFKPML
IQLLLMSVLIFYIMLPSHTVRRISSKASLSSVSEVGLKVISSVSNAASSV
IADARKEEGVGIVAACMNRQETLEKVLPTWLAVNGVEEIIIVDWGSDPPL
RSIVKPERDPRLHLYRVNKESSWVLSRAYNLALNMSSKEHVIRTDCDYSL
HPNVLEAHNLSNTHAGFYSGNWELARNENEVHLNGAMVLKRNVFWNVGGY
DERIQTYGWDDEDLYTRLQASKMRKLNVSYDHVKHVSHGDGKRAQRGVKF
AQVQIDLNQLLLEKLPQWSSSFLNANDSSQYEIVSEDGTGYHELQAIHVP
KALRHLVDAKVYEQAWAMALGRRLADDYQVPWDVLESTDCDNKEKMLRKL
MTLQDDLERERTESQSNGNETKALIPSKARLLLVHCMHGLGNRLRAIGSA
LAFAKNTRRVPVIIWESDAHIAAEFDALFNTSDIVLLNRFIPKWPFKDLH
QYDNSWNEFKFYNYMEMEEGGNKGELIKNDPNKHLYYKGAYIMEAPEYSW
WEVDNEQLRNLKPVGMVQNKLRELEKNGLSSCIGVHIRNRTLEKDIKNVD
FNQEYGSEAASTMEHWRTMSSYRTFVTEMERILKEEDKDVRFYVATDTFE
ILAIMNEKFPGKILRTERKCDDRDSECVKYAVIDMYALSKTKRLLGSNWS
SYTEMAERLGSLKASLAGQDFGAQSNSHANSHAKSTSAEAGKSKSDEEQL
AEEKDRMLDSGRE*

mRNA from alignment at tig00000207_pilon:66614..68905-

Legend: polypeptideCDSexonstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra11081.t1 ID=Ggra11081.t1|Name=Ggra11081.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2292bp|location=Sequence derived from alignment at tig00000207_pilon:66614..68905- (Gracilaria gracilis GNS1m male)
ATGGTGGCCTTCCGATCTCTGCGAGGAACAGGTGATATCGAGGCTGAAAT
GCCTCCACCAACACTTTGGCGTCATTCGCGAACGCCTTCAGTGGGAAATA
TTCCGAACTTGCAAAGTAATTTCCCATCTGTTAAGTTCAAACCAATGCTA
ATACAACTGCTTCTCATGTCCGTTCTTATCTTCTATATTATGCTACCTTC
ACATACTGTGCGAAGAATATCTTCAAAAGCATCATTGTCATCTGTATCTG
AAGTTGGATTAAAGGTAATATCAAGTGTTTCGAACGCTGCCTCTTCGGTC
ATCGCGGATGCACGCAAGGAGGAAGGAGTTGGTATCGTTGCAGCATGTAT
GAACCGCCAAGAAACATTGGAAAAAGTTCTTCCCACTTGGCTTGCTGTAA
ACGGAGTAGAAGAGATCATTATCGTTGATTGGGGAAGTGACCCGCCTCTG
CGATCCATCGTTAAACCTGAGCGCGATCCCCGCCTTCATTTATATCGAGT
CAACAAAGAATCATCATGGGTACTCTCCCGAGCTTACAATCTCGCTCTAA
ATATGTCTTCGAAGGAGCATGTTATTCGAACCGATTGCGACTATTCACTA
CATCCAAATGTTTTAGAGGCCCACAATCTAAGCAATACTCATGCCGGGTT
CTATTCGGGTAACTGGGAGCTTGCCAGAAATGAAAATGAAGTACATCTGA
ACGGTGCAATGGTCCTAAAAAGAAATGTGTTTTGGAACGTTGGGGGTTAT
GACGAACGAATCCAAACATACGGATGGGATGATGAAGACTTGTACACTCG
CTTACAGGCCAGTAAGATGAGAAAGCTTAATGTTAGTTACGATCATGTGA
AACATGTTTCGCACGGTGATGGGAAGAGAGCGCAACGTGGCGTCAAGTTT
GCTCAAGTACAAATTGACTTGAATCAACTTCTTCTCGAAAAGTTACCACA
ATGGTCGTCCTCTTTTCTGAATGCAAACGATTCTTCACAATATGAGATTG
TGTCCGAAGATGGTACAGGCTACCATGAACTGCAAGCGATTCATGTCCCG
AAAGCATTACGGCATCTTGTCGATGCTAAAGTATACGAACAGGCGTGGGC
TATGGCTCTAGGTCGCCGTCTCGCTGATGATTATCAAGTGCCATGGGATG
TACTAGAAAGCACCGATTGTGATAACAAAGAGAAAATGTTACGTAAACTT
ATGACTCTTCAGGATGACCTCGAACGGGAACGAACGGAATCTCAATCGAA
TGGAAATGAAACGAAAGCCTTAATTCCTTCTAAGGCGCGACTCCTTTTGG
TACATTGCATGCATGGTCTTGGAAACAGATTAAGGGCCATTGGAAGTGCC
CTAGCGTTTGCCAAGAATACGAGAAGAGTTCCGGTTATAATATGGGAGAG
CGATGCTCATATTGCTGCGGAATTTGATGCCTTGTTCAACACATCCGATA
TTGTTCTTCTAAATCGATTCATTCCGAAGTGGCCCTTCAAAGATCTACAT
CAGTATGACAACTCCTGGAACGAATTCAAGTTCTATAACTATATGGAAAT
GGAAGAGGGTGGAAACAAGGGTGAACTGATCAAGAACGACCCGAACAAGC
ATTTGTATTACAAAGGGGCTTACATTATGGAAGCCCCAGAATACTCATGG
TGGGAAGTAGATAATGAGCAGCTAAGGAATCTGAAACCCGTTGGAATGGT
GCAGAACAAGTTGAGAGAACTGGAGAAGAACGGCCTGTCAAGCTGTATTG
GGGTTCACATCCGCAATAGAACTCTTGAAAAGGATATAAAGAATGTAGAT
TTCAACCAGGAATACGGATCAGAAGCGGCTTCTACGATGGAACATTGGCG
CACCATGAGTTCCTACAGGACTTTCGTAACAGAAATGGAACGCATTCTGA
AGGAGGAGGACAAGGATGTGAGGTTTTACGTTGCCACAGATACGTTTGAA
ATTCTCGCAATCATGAATGAAAAGTTCCCGGGGAAGATTCTTCGCACTGA
ACGGAAATGTGACGACAGAGATTCTGAATGCGTAAAATATGCCGTTATCG
ACATGTACGCCTTGAGTAAGACTAAGAGGCTGCTTGGTTCGAATTGGAGC
AGTTACACTGAGATGGCAGAAAGGCTGGGAAGTCTCAAAGCAAGTCTGGC
TGGTCAGGATTTCGGAGCTCAGTCGAACTCTCATGCGAACTCTCATGCGA
AAAGCACTTCTGCAGAAGCAGGAAAGAGCAAATCAGACGAAGAACAGCTA
GCTGAAGAGAAAGATAGAATGCTGGACTCAGGTCGAGAATGA

Coding sequence (CDS) from alignment at tig00000207_pilon:66614..68905-

>Ggra11081.t1 ID=Ggra11081.t1|Name=Ggra11081.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2292bp|location=Sequence derived from alignment at tig00000207_pilon:66614..68905- (Gracilaria gracilis GNS1m male)
ATGGTGGCCTTCCGATCTCTGCGAGGAACAGGTGATATCGAGGCTGAAAT
GCCTCCACCAACACTTTGGCGTCATTCGCGAACGCCTTCAGTGGGAAATA
TTCCGAACTTGCAAAGTAATTTCCCATCTGTTAAGTTCAAACCAATGCTA
ATACAACTGCTTCTCATGTCCGTTCTTATCTTCTATATTATGCTACCTTC
ACATACTGTGCGAAGAATATCTTCAAAAGCATCATTGTCATCTGTATCTG
AAGTTGGATTAAAGGTAATATCAAGTGTTTCGAACGCTGCCTCTTCGGTC
ATCGCGGATGCACGCAAGGAGGAAGGAGTTGGTATCGTTGCAGCATGTAT
GAACCGCCAAGAAACATTGGAAAAAGTTCTTCCCACTTGGCTTGCTGTAA
ACGGAGTAGAAGAGATCATTATCGTTGATTGGGGAAGTGACCCGCCTCTG
CGATCCATCGTTAAACCTGAGCGCGATCCCCGCCTTCATTTATATCGAGT
CAACAAAGAATCATCATGGGTACTCTCCCGAGCTTACAATCTCGCTCTAA
ATATGTCTTCGAAGGAGCATGTTATTCGAACCGATTGCGACTATTCACTA
CATCCAAATGTTTTAGAGGCCCACAATCTAAGCAATACTCATGCCGGGTT
CTATTCGGGTAACTGGGAGCTTGCCAGAAATGAAAATGAAGTACATCTGA
ACGGTGCAATGGTCCTAAAAAGAAATGTGTTTTGGAACGTTGGGGGTTAT
GACGAACGAATCCAAACATACGGATGGGATGATGAAGACTTGTACACTCG
CTTACAGGCCAGTAAGATGAGAAAGCTTAATGTTAGTTACGATCATGTGA
AACATGTTTCGCACGGTGATGGGAAGAGAGCGCAACGTGGCGTCAAGTTT
GCTCAAGTACAAATTGACTTGAATCAACTTCTTCTCGAAAAGTTACCACA
ATGGTCGTCCTCTTTTCTGAATGCAAACGATTCTTCACAATATGAGATTG
TGTCCGAAGATGGTACAGGCTACCATGAACTGCAAGCGATTCATGTCCCG
AAAGCATTACGGCATCTTGTCGATGCTAAAGTATACGAACAGGCGTGGGC
TATGGCTCTAGGTCGCCGTCTCGCTGATGATTATCAAGTGCCATGGGATG
TACTAGAAAGCACCGATTGTGATAACAAAGAGAAAATGTTACGTAAACTT
ATGACTCTTCAGGATGACCTCGAACGGGAACGAACGGAATCTCAATCGAA
TGGAAATGAAACGAAAGCCTTAATTCCTTCTAAGGCGCGACTCCTTTTGG
TACATTGCATGCATGGTCTTGGAAACAGATTAAGGGCCATTGGAAGTGCC
CTAGCGTTTGCCAAGAATACGAGAAGAGTTCCGGTTATAATATGGGAGAG
CGATGCTCATATTGCTGCGGAATTTGATGCCTTGTTCAACACATCCGATA
TTGTTCTTCTAAATCGATTCATTCCGAAGTGGCCCTTCAAAGATCTACAT
CAGTATGACAACTCCTGGAACGAATTCAAGTTCTATAACTATATGGAAAT
GGAAGAGGGTGGAAACAAGGGTGAACTGATCAAGAACGACCCGAACAAGC
ATTTGTATTACAAAGGGGCTTACATTATGGAAGCCCCAGAATACTCATGG
TGGGAAGTAGATAATGAGCAGCTAAGGAATCTGAAACCCGTTGGAATGGT
GCAGAACAAGTTGAGAGAACTGGAGAAGAACGGCCTGTCAAGCTGTATTG
GGGTTCACATCCGCAATAGAACTCTTGAAAAGGATATAAAGAATGTAGAT
TTCAACCAGGAATACGGATCAGAAGCGGCTTCTACGATGGAACATTGGCG
CACCATGAGTTCCTACAGGACTTTCGTAACAGAAATGGAACGCATTCTGA
AGGAGGAGGACAAGGATGTGAGGTTTTACGTTGCCACAGATACGTTTGAA
ATTCTCGCAATCATGAATGAAAAGTTCCCGGGGAAGATTCTTCGCACTGA
ACGGAAATGTGACGACAGAGATTCTGAATGCGTAAAATATGCCGTTATCG
ACATGTACGCCTTGAGTAAGACTAAGAGGCTGCTTGGTTCGAATTGGAGC
AGTTACACTGAGATGGCAGAAAGGCTGGGAAGTCTCAAAGCAAGTCTGGC
TGGTCAGGATTTCGGAGCTCAGTCGAACTCTCATGCGAACTCTCATGCGA
AAAGCACTTCTGCAGAAGCAGGAAAGAGCAAATCAGACGAAGAACAGCTA
GCTGAAGAGAAAGATAGAATGCTGGACTCAGGTCGAGAATGA