Ggra11059.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra11059.t1
Unique NameGgra11059.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Homology
BLAST of Ggra11059.t1 vs. uniprot
Match: A0A2V3J5V6 (50S ribosomal protein L3, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5V6_9FLOR)

HSP 1 Score: 433 bits (1113), Expect = 3.330e-152
Identity = 205/231 (88.74%), Postives = 218/231 (94.37%), Query Frame = 0
Query:    1 MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKKLRRNDQAPPALRLSTDGIVEWRKKGIVEAI 231
            M+LWD EG RHPITVLCVDRCHVIS+APPNPNDHR RWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPK KLAEFGVHEMFKL +GTE+RA+HF+ GQ VDVTGTSIGKGTQGVMKRWGFSGAPATHGTSK HRKGGSIGMSTKPGRVFKGKKMAGRMGNE+VTVQNLMVYRID DRNLIYVRGAVPGNSGNWVRVRDAVKKL+RN +APPALR STDG++EW+  G+VEAI
Sbjct:   49 MNLWDDEGQRHPITVLCVDRCHVISIAPPNPNDHRDRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKQKLAEFGVHEMFKLPIGTELRASHFAPGQFVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKAHRKGGSIGMSTKPGRVFKGKKMAGRMGNEKVTVQNLMVYRIDADRNLIYVRGAVPGNSGNWVRVRDAVKKLKRNAEAPPALRHSTDGVIEWKNAGLVEAI 279          
BLAST of Ggra11059.t1 vs. uniprot
Match: R7Q360 (50S ribosomal protein L3, chloroplastic n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q360_CHOCR)

HSP 1 Score: 382 bits (981), Expect = 6.940e-133
Identity = 179/232 (77.16%), Postives = 204/232 (87.93%), Query Frame = 0
Query:    1 MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKKLRRNDQAPPALRLSTDGIVEWRKKGIVEAIA 232
            M+LWD  GTRHPITVLCVDRCHV+ +  PN ND +QRW +QVGAGPKRPYKT KAHRYHCAKAGVEPK KL EF V++MF + +GTE+RANHF VGQ +DVTGTSIGKGTQGVMKRWGF+G PA+HG SK HRKGGSIGMSTKPGRVFKGKKMAG MGNER TVQ+LMVYRID  RNLIY+RGAVPGNSGNWVRVRDAV+KL+   +APPALR ST+G+VEW+K+G+V A++
Sbjct:    1 MNLWDDNGTRHPITVLCVDRCHVLRIREPNTNDRKQRWGVQVGAGPKRPYKTNKAHRYHCAKAGVEPKQKLCEFMVNKMFTIPIGTELRANHFEVGQYIDVTGTSIGKGTQGVMKRWGFAGGPASHGCSKAHRKGGSIGMSTKPGRVFKGKKMAGHMGNERKTVQSLMVYRIDNVRNLIYLRGAVPGNSGNWVRVRDAVRKLKIGMEAPPALRFSTEGVVEWKKEGVVAALS 232          
BLAST of Ggra11059.t1 vs. uniprot
Match: 50S ribosomal protein L3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF405 (50S ribosomal protein L3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF405)

HSP 1 Score: 289 bits (739), Expect = 5.730e-94
Identity = 143/201 (71.14%), Postives = 160/201 (79.60%), Query Frame = 0
Query:    1 MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKK 201
            M+LWD+   RHPITVLCVDRCHV+ V  P  ++ R RW +QVGAGP+RPYKT K+ RYH AKAGVEPK ++ EF V +   + VGTE+RA+HF  GQ VDVTG SIGKG QG MKRWGF G  ATHG SK HR  GS GMSTKPGR FKGKKMAGRMG ++VTVQNL VYR+D  RNLIYVRGAVPGNSGNWVRVRDAVKK
Sbjct:   54 MNLWDSGSIRHPITVLCVDRCHVLQVKEPQISEKRGRWALQVGAGPQRPYKTNKSLRYHFAKAGVEPKQEVTEFLVPKDAVVPVGTELRASHFQPGQFVDVTGISIGKGFQGPMKRWGFKGGNATHGNSKAHRSHGSTGMSTKPGRTFKGKKMAGRMGADKVTVQNLRVYRVDDPRNLIYVRGAVPGNSGNWVRVRDAVKK 254          
BLAST of Ggra11059.t1 vs. uniprot
Match: A0A1X6P033 (50S ribosomal protein L3, chloroplastic n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P033_PORUM)

HSP 1 Score: 246 bits (627), Expect = 1.380e-78
Identity = 127/201 (63.18%), Postives = 146/201 (72.64%), Query Frame = 0
Query:    1 MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGM-STKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVK 200
            MSL+D+ GT HPITVLC+DRCHV +  PP P+D R   R+QV AGP+R + T KA RYH A AGVEPK   AEF V E   L VGT + A HF  GQLVDV GT+IGKG QG MKRW F+G  A+HG SK HRK G IG  ST PGRV+ GKKMAGRMG    TV NL V+R+D  R L++VRGAVPGN+G WVRVRDA+K
Sbjct:   20 MSLYDSYGTMHPITVLCIDRCHVTAAMPPLPSDPRCLHRLQVAAGPRRAHDTPKAQRYHYAAAGVEPKEIAAEFRVSEAALLPVGTAVTAAHFVPGQLVDVAGTTIGKGFQGTMKRWNFAGGAASHGNSKAHRKPGGIGAGSTVPGRVWPGKKMAGRMGGAPRTVMNLRVFRVDAARGLVFVRGAVPGNAGGWVRVRDALK 220          
BLAST of Ggra11059.t1 vs. uniprot
Match: M2XP97 (50S ribosomal protein L3, chloroplastic n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XP97_GALSU)

HSP 1 Score: 225 bits (573), Expect = 1.120e-69
Identity = 117/212 (55.19%), Postives = 149/212 (70.28%), Query Frame = 0
Query:    1 MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMS-TKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKKLRRNDQAPPA 211
            M  WD +G  HP TV+ +DRC V+ + P    D + R  +QVGAG +RPY+ +K  R H A  GVEPK KLAEF V E   + +GTE+ ANHF VGQ VDV GTS GKGTQG M+RWGF+G  A+HG SK HRK GS+G   ++P    KGKKMAG+MG +RVT+Q+L V R+D +RNL+Y+ GAVPG+ G+WVRVRDA KK    ++ PP+
Sbjct:   93 MQYWDEKGIMHPCTVVVIDRCQVVYINPVK--DSKGRVGLQVGAGLERPYQMRKFLRMHFAYNGVEPKKKLAEFRVTEDAIVPIGTELSANHFVVGQYVDVIGTSKGKGTQGAMRRWGFAGQNASHGVSKAHRKIGSVGGGRSRPQETPKGKKMAGKMGRKRVTIQSLEVLRVDAERNLLYLHGAVPGHRGSWVRVRDAKKKPFEPEKVPPS 302          
BLAST of Ggra11059.t1 vs. uniprot
Match: E1ZGM1 (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZGM1_CHLVA)

HSP 1 Score: 215 bits (547), Expect = 6.950e-67
Identity = 118/207 (57.00%), Postives = 139/207 (67.15%), Query Frame = 0
Query:    4 WDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKKLRRNDQAPP 210
            WDA G R P+TVL VD C V+ V     +D      +Q+G+G KRP + +   R H   AGV PK +LAEF V     L VG E+RA+HF  GQ VDVTGTSIGKG QGVMKRWGF+G PA+HG S  HR  GS G    PG+VFKGKKM GRMG ERVTVQN  V+R+D  RNL+YVRG VPG+ GN+V VRD+ KK    +Q PP
Sbjct:    5 WDAWGVRVPLTVLWVDDCQVVQVKT---DDKEGYTALQLGSGSKRPKQLRGTLRGHFDAAGVAPKRRLAEFRVSPDALLPVGHELRASHFVAGQFVDVTGTSIGKGFQGVMKRWGFAGQPASHGNSLAHRAAGSTGACQDPGKVFKGKKMPGRMGGERVTVQNNQVFRVDPLRNLLYVRGHVPGHKGNFVLVRDSAKKTL--EQQPP 206          
BLAST of Ggra11059.t1 vs. uniprot
Match: A0A7J7ISZ9 (50S ribosomal protein L3, chloroplastic n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7ISZ9_9RHOD)

HSP 1 Score: 219 bits (558), Expect = 9.300e-67
Identity = 120/206 (58.25%), Postives = 136/206 (66.02%), Query Frame = 0
Query:    1 MSLWDAEGTRHPITVLCVDRCHVISVA--PPN--PNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDV--GTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVK 200
            +  WDA G  H +TVL VD  HVI V   P N  P      W +Q+GAG  RPY+ KK HRYHCA AG + K KLAEF V       V  GT I   HF  GQ +DVTGTS+GKG QGVMKR GFSG PA+HG S THR  G+ G    PGRVFKGK+M GRMG  R TVQNL + RIDC RNL++V G VPG++GNWV VRDAVK
Sbjct:  109 LPYWDANGVYHCLTVLHVDNNHVIQVKRLPDNASPLKGLSEWSVQIGAGFMRPYQAKKPHRYHCAYAGCDVKEKLAEFRVAPAAAACVQPGTPITVRHFVPGQYLDVTGTSLGKGFQGVMKRHGFSGLPASHGVSLTHRSLGATGQRQDPGRVFKGKRMPGRMGGRRTTVQNLRLERIDCSRNLLFVSGPVPGHAGNWVLVRDAVK 314          
BLAST of Ggra11059.t1 vs. uniprot
Match: A0A7V5M3N0 (50S ribosomal protein L3 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7V5M3N0_9BACT)

HSP 1 Score: 215 bits (548), Expect = 8.550e-66
Identity = 115/204 (56.37%), Postives = 136/204 (66.67%), Query Frame = 0
Query:    4 WDAEGTRHPITVLCVDRCHVISVA--PPNPNDHR--QRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFK--LDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKK 201
            WDA G    +TVL +D  HVI V   P N ++ +    W +Q+GAG  RPY+ KK HRYHCA AG + K KL EF V       ++ GT I A HF  GQ +DV GTSIGKG QG MKR GF G PA+HG S THR  G+ G    PGRVFKGK+M GRMG ER TVQ+L + RIDC RNL++V G VPG++GNWV VRDAVKK
Sbjct:   73 WDANGVYRCVTVLHIDNNHVIQVKQLPSNASNLKGLSEWSVQIGAGSMRPYQAKKPHRYHCAYAGTDVKEKLVEFRVAPAAAACIEPGTPITARHFIPGQYLDVIGTSIGKGFQGAMKRHGFGGLPASHGVSLTHRSLGATGQRQDPGRVFKGKRMPGRMGGERTTVQSLRLERIDCKRNLLFVSGPVPGHTGNWVLVRDAVKK 276          
BLAST of Ggra11059.t1 vs. uniprot
Match: A0A2P6TTY5 (50S ribosomal L3-chloroplastic n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTY5_CHLSO)

HSP 1 Score: 214 bits (544), Expect = 3.420e-65
Identity = 118/208 (56.73%), Postives = 140/208 (67.31%), Query Frame = 0
Query:    4 WDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWR-IQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKKLRRNDQAPP 210
            WDA G R P+TVL VD C V+ V      D R+ +  +Q+GAG KRP + + + R H   AGV  K K+AEF V     L VG E+RA+HF  GQ VDV GTSIGKG QGVMKRWGF+G PA+HG S  HR  GS G    PG+VFKGKKM GRMG ERVTVQN  V+R+D  RNL+YV+G VPG+ GNWV V+D+VKK     Q PP
Sbjct:   99 WDAWGVRVPLTVLWVDDCQVVQVK----TDEREGYTALQLGAGAKRPKQLRGSLRGHFEAAGVPLKRKVAEFRVTPDALLPVGHELRASHFVAGQFVDVAGTSIGKGFQGVMKRWGFAGQPASHGNSLAHRAAGSTGACQDPGKVFKGKKMPGRMGGERVTVQNCKVFRVDPVRNLLYVQGQVPGHKGNWVLVKDSVKKSAA--QQPP 300          
BLAST of Ggra11059.t1 vs. uniprot
Match: A0A2P6VDP6 (50S ribosomal L3 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VDP6_9CHLO)

HSP 1 Score: 214 bits (544), Expect = 4.060e-65
Identity = 116/207 (56.04%), Postives = 136/207 (65.70%), Query Frame = 0
Query:    4 WDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPYKTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVDVTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKGKKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVKKLRRNDQAPP 210
            WDA G R P+TVL VD C V+ V       +     +Q+G+G KRP +       H A AGV PK  LAEF V     L VG E+RA+HF  GQ VDV+GTSIGKG QGVMKRWGF+G PA+HG S  HR  GS G    PG+VFKGKKM GRMG ERVTVQN  V+R+D  RNL+YVRG VPG+ GNWV ++D+VKK     Q PP
Sbjct:  104 WDAWGMRQPLTVLWVDDCQVVQVKTAEKEGYTA---VQLGSGAKRPKQLPGTLIGHYAAAGVPPKRMLAEFRVSPDALLPVGHELRASHFIAGQYVDVSGTSIGKGFQGVMKRWGFAGQPASHGNSLAHRAAGSTGGCQDPGKVFKGKKMPGRMGGERVTVQNCQVFRVDPARNLLYVRGQVPGHKGNWVLIKDSVKKTVA--QQPP 305          
The following BLAST results are available for this feature:
BLAST of Ggra11059.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J5V63.330e-15288.7450S ribosomal protein L3, chloroplastic n=1 Tax=Gr... [more]
R7Q3606.940e-13377.1650S ribosomal protein L3, chloroplastic n=1 Tax=Ch... [more]
50S ribosomal protein L3-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DF4055.730e-9471.1450S ribosomal protein L3-like n=1 Tax=Mercenaria m... [more]
A0A1X6P0331.380e-7863.1850S ribosomal protein L3, chloroplastic n=1 Tax=Po... [more]
M2XP971.120e-6955.1950S ribosomal protein L3, chloroplastic n=1 Tax=Ga... [more]
E1ZGM16.950e-6757.00Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
A0A7J7ISZ99.300e-6758.2550S ribosomal protein L3, chloroplastic n=1 Tax=Cy... [more]
A0A7V5M3N08.550e-6656.3750S ribosomal protein L3 n=2 Tax=cellular organism... [more]
A0A2P6TTY53.420e-6556.7350S ribosomal L3-chloroplastic n=1 Tax=Chlorella s... [more]
A0A2P6VDP64.060e-6556.0450S ribosomal L3 n=1 Tax=Micractinium conductrix T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019927Ribosomal protein L3, bacterial/organelle-typeTIGRFAMTIGR03625TIGR03625coord: 3..196
e-value: 1.2E-66
score: 222.4
IPR019927Ribosomal protein L3, bacterial/organelle-typePANTHERPTHR1122950S RIBOSOMAL PROTEIN L3coord: 1..208
NoneNo IPR availableGENE3D2.40.30.10Translation factorscoord: 120..202
e-value: 1.6E-25
score: 91.4
NoneNo IPR availableGENE3D3.30.160.810coord: 31..88
e-value: 1.9E-10
score: 43.0
IPR000597Ribosomal protein L3PFAMPF00297Ribosomal_L3coord: 86..174
e-value: 2.6E-20
score: 72.8
IPR019926Ribosomal protein L3, conserved sitePROSITEPS00474RIBOSOMAL_L3coord: 93..116
IPR009000Translation protein, beta-barrel domain superfamilySUPERFAMILY50447Translation proteinscoord: 2..204

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:12870..13568 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11059.t1Ggra11059.t1Gracilaria gracilis GNS1m malemRNAtig00000207_pilon 12870..13568 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra11059.t1 ID=Ggra11059.t1|Name=Ggra11059.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPY
KTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVD
VTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKG
KKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVK
KLRRNDQAPPALRLSTDGIVEWRKKGIVEAIA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019927Ribosomal_L3_bac/org-type
IPR000597Ribosomal_L3
IPR019926Ribosomal_L3_CS
IPR009000Transl_B-barrel_sf