Ggra11059.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra11059.t1
Unique NameGgra11059.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length233
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000207_piloncontigtig00000207_pilon:12870..13568 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708527.1
PFAMsRibosomal_L3
Max annot lvl2759|Eukaryota
KEGG koko:K02906
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Evalue7.8e-70
EggNOG OGsCOG0087@1|root,KOG3141@2759|Eukaryota
Descriptionstructural constituent of ribosome
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra11059Ggra11059Gracilaria gracilis GNS1m malegenetig00000207_pilon 12870..13568 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11059.t1.stop1Ggra11059.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000207_pilon 12870..12872 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11059.t1.CDS1Ggra11059.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000207_pilon 12870..13568 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11059.t1.exon1Ggra11059.t1.exon1Gracilaria gracilis GNS1m maleexontig00000207_pilon 12870..13568 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11059.t1.start1Ggra11059.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000207_pilon 13566..13568 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra11059.t1Ggra11059.t1Gracilaria gracilis GNS1m malepolypeptidetig00000207_pilon 12870..13568 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra11059.t1 ID=Ggra11059.t1|Name=Ggra11059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=233bp
MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPY
KTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVD
VTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKG
KKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVK
KLRRNDQAPPALRLSTDGIVEWRKKGIVEAIA*
back to top

spliced messenger RNA

>Ggra11059.t1 ID=Ggra11059.t1|Name=Ggra11059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000207_pilon:12870..13568- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTCTGTGGGATGCAGAAGGAACTCGTCATCCAATCACAGTACTCTG
CGTTGATCGATGCCATGTTATCAGTGTTGCGCCACCAAACCCAAACGATC
ATCGGCAACGGTGGCGAATTCAAGTTGGAGCTGGTCCAAAACGACCTTAT
AAGACGAAGAAAGCTCATCGGTATCATTGTGCGAAAGCGGGTGTTGAACC
AAAGCATAAATTGGCTGAATTCGGGGTACATGAAATGTTTAAACTTGATG
TGGGTACCGAGATTCGTGCCAATCATTTTTCAGTTGGACAGCTTGTGGAT
GTTACAGGGACCTCCATAGGAAAGGGAACTCAGGGTGTGATGAAACGGTG
GGGATTTTCCGGGGCTCCTGCCACTCATGGTACCAGCAAGACGCATAGAA
AAGGAGGTTCTATTGGTATGTCGACGAAACCGGGACGTGTGTTCAAGGGA
AAGAAAATGGCTGGTCGTATGGGTAATGAAAGAGTCACCGTGCAGAATTT
AATGGTGTATCGAATCGATTGTGATCGTAATCTTATATATGTGCGGGGAG
CTGTACCTGGAAACTCGGGCAATTGGGTCCGCGTGAGAGATGCTGTTAAG
AAACTGCGAAGAAATGATCAAGCGCCTCCTGCTTTGCGACTGAGTACAGA
CGGTATTGTCGAATGGCGGAAAAAAGGGATCGTCGAGGCTATTGCATAA
back to top

protein sequence of Ggra11059.t1

>Ggra11059.t1 ID=Ggra11059.t1|Name=Ggra11059.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=233bp
MSLWDAEGTRHPITVLCVDRCHVISVAPPNPNDHRQRWRIQVGAGPKRPY
KTKKAHRYHCAKAGVEPKHKLAEFGVHEMFKLDVGTEIRANHFSVGQLVD
VTGTSIGKGTQGVMKRWGFSGAPATHGTSKTHRKGGSIGMSTKPGRVFKG
KKMAGRMGNERVTVQNLMVYRIDCDRNLIYVRGAVPGNSGNWVRVRDAVK
KLRRNDQAPPALRLSTDGIVEWRKKGIVEAIA*
back to top

mRNA from alignment at tig00000207_pilon:12870..13568-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra11059.t1 ID=Ggra11059.t1|Name=Ggra11059.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=699bp|location=Sequence derived from alignment at tig00000207_pilon:12870..13568- (Gracilaria gracilis GNS1m male)
ATGAGTCTGTGGGATGCAGAAGGAACTCGTCATCCAATCACAGTACTCTG
CGTTGATCGATGCCATGTTATCAGTGTTGCGCCACCAAACCCAAACGATC
ATCGGCAACGGTGGCGAATTCAAGTTGGAGCTGGTCCAAAACGACCTTAT
AAGACGAAGAAAGCTCATCGGTATCATTGTGCGAAAGCGGGTGTTGAACC
AAAGCATAAATTGGCTGAATTCGGGGTACATGAAATGTTTAAACTTGATG
TGGGTACCGAGATTCGTGCCAATCATTTTTCAGTTGGACAGCTTGTGGAT
GTTACAGGGACCTCCATAGGAAAGGGAACTCAGGGTGTGATGAAACGGTG
GGGATTTTCCGGGGCTCCTGCCACTCATGGTACCAGCAAGACGCATAGAA
AAGGAGGTTCTATTGGTATGTCGACGAAACCGGGACGTGTGTTCAAGGGA
AAGAAAATGGCTGGTCGTATGGGTAATGAAAGAGTCACCGTGCAGAATTT
AATGGTGTATCGAATCGATTGTGATCGTAATCTTATATATGTGCGGGGAG
CTGTACCTGGAAACTCGGGCAATTGGGTCCGCGTGAGAGATGCTGTTAAG
AAACTGCGAAGAAATGATCAAGCGCCTCCTGCTTTGCGACTGAGTACAGA
CGGTATTGTCGAATGGCGGAAAAAAGGGATCGTCGAGGCTATTGCATAA
back to top

Coding sequence (CDS) from alignment at tig00000207_pilon:12870..13568-

>Ggra11059.t1 ID=Ggra11059.t1|Name=Ggra11059.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=699bp|location=Sequence derived from alignment at tig00000207_pilon:12870..13568- (Gracilaria gracilis GNS1m male)
ATGAGTCTGTGGGATGCAGAAGGAACTCGTCATCCAATCACAGTACTCTG
CGTTGATCGATGCCATGTTATCAGTGTTGCGCCACCAAACCCAAACGATC
ATCGGCAACGGTGGCGAATTCAAGTTGGAGCTGGTCCAAAACGACCTTAT
AAGACGAAGAAAGCTCATCGGTATCATTGTGCGAAAGCGGGTGTTGAACC
AAAGCATAAATTGGCTGAATTCGGGGTACATGAAATGTTTAAACTTGATG
TGGGTACCGAGATTCGTGCCAATCATTTTTCAGTTGGACAGCTTGTGGAT
GTTACAGGGACCTCCATAGGAAAGGGAACTCAGGGTGTGATGAAACGGTG
GGGATTTTCCGGGGCTCCTGCCACTCATGGTACCAGCAAGACGCATAGAA
AAGGAGGTTCTATTGGTATGTCGACGAAACCGGGACGTGTGTTCAAGGGA
AAGAAAATGGCTGGTCGTATGGGTAATGAAAGAGTCACCGTGCAGAATTT
AATGGTGTATCGAATCGATTGTGATCGTAATCTTATATATGTGCGGGGAG
CTGTACCTGGAAACTCGGGCAATTGGGTCCGCGTGAGAGATGCTGTTAAG
AAACTGCGAAGAAATGATCAAGCGCCTCCTGCTTTGCGACTGAGTACAGA
CGGTATTGTCGAATGGCGGAAAAAAGGGATCGTCGAGGCTATTGCATAA
back to top