Ggra10176.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10176.t1
Unique NameGgra10176.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length839
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:8007..10523 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10176Ggra10176Gracilaria gracilis GNS1m malegenetig00000016_pilon 8007..10523 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10176.t1.stop1Ggra10176.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 8007..8009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10176.t1.CDS1Ggra10176.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 8007..10523 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10176.t1.exon1Ggra10176.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 8007..10523 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10176.t1.start1Ggra10176.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 10521..10523 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10176.t1Ggra10176.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 8007..10523 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10176.t1 ID=Ggra10176.t1|Name=Ggra10176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=839bp
MKLTDTTKCKQAAALAAVNLPEIQPLPPSSTAPSASTAVPASVLIPASIQ
PAVANGTPAVKSEPTSASWMISRDPSPERFPVECKLRTVQTPQPSQPHQT
PKPTPAIGKRPLLHPEPEHRHLPDPRPSKKRRAQEIDKPTAKRPKTNNQH
LILSPGYSFQTTRAPIAKSDFMFPVLLEEGSAKPKWAACLLCCSAPSPKA
FIYFKKLPLKKSRLHTHFNTSHRAFMGEQKYTCLDPDQKIAFIRKGVSTF
DVFKNNNHIRSLESSPNWNCHEFDRLFRSYSSFADLRSFAVQNFDQGPAK
SHEAKKSARPTATKQKVSDRPFSNTRKLLGLEPVPSTQGREKKIRKQLSN
LFNQGSKDVKETASPSFCTKDPEHSCGRRNLTNDTELQSDIFRFTRNPIE
GTLSGAIAYKNLKQWIRGSGRRAHENIQLLVLGDMLGDPLNDNSATANNA
FLNPISFHSLNELDSPEERSGKRSNFRPLSVLTLFYLMRGVPCPVIAELV
DAMTAGEQNGANERAGSILPLIVQGGNSMCAENLRLMRNALDEEHQYNWA
LVLLTRPCPELDEDGVEVLVAVRNCKMVRCDLHVVSVRLAEGIDDRILPF
FDAICTDWKRRFVGINSGIDGSDLKRKAVERKLFEVLQAVEGVEEVRLID
KEVGRDGRPIFSDVVADMSDEDFSDFVDWHEKRFEKYLSKARLISARKAL
VQSGRVKDGYGAQPTSEPNNTDLYHNRELQLSVQDWVPFDELRDFAYTLK
PLYEKFGELTNQSGCIRAGVTCGRMRYEKTIVDAGLERVFHARSLMKAWC
MTKIGEGKVPSPKTRSQMSIWEDNWSNAMREVQSEKSE*
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spliced messenger RNA

>Ggra10176.t1 ID=Ggra10176.t1|Name=Ggra10176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2517bp|location=Sequence derived from alignment at tig00000016_pilon:8007..10523- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTCACGGATACCACCAAATGCAAGCAAGCTGCCGCGCTCGCCGC
AGTCAATCTGCCGGAAATCCAGCCACTGCCGCCCTCGTCCACGGCACCCT
CAGCCTCCACAGCAGTTCCAGCTTCAGTGCTGATCCCTGCGTCGATACAG
CCTGCTGTCGCCAATGGCACGCCGGCAGTCAAGTCGGAGCCAACCAGCGC
CTCATGGATGATTTCGAGAGATCCTTCGCCGGAGAGGTTTCCTGTGGAGT
GCAAGCTGCGTACAGTACAAACGCCACAACCTTCACAACCGCACCAGACG
CCGAAGCCAACTCCTGCTATTGGCAAAAGGCCTTTGCTGCACCCAGAACC
CGAGCATCGCCATCTGCCCGACCCTAGACCTTCGAAGAAGAGACGTGCTC
AAGAAATCGACAAGCCTACCGCAAAGCGTCCTAAGACCAACAACCAGCAC
TTGATCTTATCTCCAGGGTATAGCTTCCAGACGACTCGTGCTCCTATAGC
GAAAAGCGATTTCATGTTCCCGGTCTTGCTGGAGGAAGGGAGTGCAAAGC
CGAAATGGGCTGCGTGCCTTCTGTGTTGCTCCGCACCCTCTCCGAAAGCC
TTCATATATTTCAAAAAGCTTCCACTCAAAAAATCTAGGCTCCACACTCA
CTTCAATACATCTCACCGCGCTTTTATGGGTGAACAAAAGTACACTTGCC
TGGACCCAGATCAGAAGATCGCATTCATACGGAAAGGTGTTTCAACTTTT
GATGTCTTCAAGAACAACAACCACATTCGAAGCTTGGAAAGCTCTCCCAA
TTGGAACTGCCATGAGTTTGATCGTCTCTTCCGCTCCTACTCTTCCTTCG
CAGATCTTCGTTCATTTGCAGTACAAAACTTTGATCAAGGACCAGCCAAA
TCTCACGAAGCAAAGAAAAGCGCTCGACCAACTGCTACGAAGCAGAAAGT
GAGTGACAGGCCGTTTTCGAATACGAGAAAGTTGTTGGGTCTAGAGCCTG
TACCTTCGACGCAAGGTCGAGAAAAAAAGATAAGGAAACAGCTATCCAAC
CTGTTCAATCAGGGCAGCAAAGATGTCAAGGAAACCGCTTCTCCATCTTT
TTGTACTAAAGATCCTGAACACAGTTGCGGTCGACGAAACCTTACGAATG
ACACGGAGCTGCAATCAGATATTTTTCGATTCACACGCAATCCTATCGAA
GGAACGTTGAGTGGTGCGATTGCGTACAAAAATCTTAAACAGTGGATTCG
AGGCAGTGGGAGACGGGCACATGAGAATATACAACTGCTGGTTTTGGGGG
ACATGCTGGGGGATCCATTGAATGACAATTCGGCGACAGCAAACAACGCC
TTTCTCAACCCGATATCATTCCATTCGCTCAACGAGCTGGATTCTCCTGA
GGAAAGGTCGGGAAAAAGAAGTAACTTCCGCCCTTTGTCAGTGTTAACGT
TATTCTATCTGATGCGAGGTGTACCATGTCCTGTGATTGCAGAACTTGTC
GATGCTATGACAGCCGGAGAACAAAACGGTGCGAATGAGCGCGCTGGCAG
CATCTTGCCATTGATTGTACAAGGGGGGAACTCTATGTGCGCGGAGAACT
TGCGATTGATGCGAAATGCACTTGATGAAGAGCATCAGTACAACTGGGCC
TTAGTGCTTCTGACGCGCCCATGCCCGGAACTTGATGAGGACGGCGTGGA
GGTTTTGGTTGCGGTGCGCAATTGCAAAATGGTACGATGCGATTTGCATG
TTGTATCAGTCCGTCTTGCGGAGGGTATTGATGACCGAATACTACCGTTC
TTCGATGCAATTTGTACAGACTGGAAAAGGCGATTTGTAGGGATCAACTC
CGGAATTGACGGCTCAGACCTCAAGCGAAAGGCGGTGGAACGAAAGCTTT
TCGAAGTGTTGCAGGCCGTGGAAGGTGTGGAAGAAGTTCGATTGATTGAT
AAGGAAGTGGGCAGAGATGGAAGACCAATCTTCTCAGATGTTGTGGCAGA
TATGAGTGATGAAGACTTTTCAGATTTCGTAGATTGGCATGAGAAACGGT
TCGAGAAGTACCTGAGCAAGGCACGATTGATAAGCGCTCGCAAAGCGCTT
GTTCAAAGTGGACGTGTTAAAGATGGATATGGAGCACAACCGACTTCCGA
ACCAAACAACACTGACCTGTATCACAACCGCGAATTGCAGCTCTCTGTGC
AGGATTGGGTGCCCTTCGACGAATTAAGAGACTTTGCGTACACTTTGAAA
CCGCTATACGAAAAGTTTGGGGAGCTCACGAACCAGAGCGGGTGCATTCG
TGCAGGCGTGACTTGTGGCAGGATGAGATATGAGAAGACGATTGTCGACG
CTGGGTTGGAACGTGTCTTTCATGCACGATCCTTGATGAAGGCGTGGTGT
ATGACGAAGATCGGGGAGGGCAAGGTGCCCTCCCCGAAAACACGGAGCCA
GATGTCCATCTGGGAGGATAATTGGTCCAATGCCATGCGCGAGGTACAGT
CAGAGAAATCTGAATAG
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protein sequence of Ggra10176.t1

>Ggra10176.t1 ID=Ggra10176.t1|Name=Ggra10176.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=839bp
MKLTDTTKCKQAAALAAVNLPEIQPLPPSSTAPSASTAVPASVLIPASIQ
PAVANGTPAVKSEPTSASWMISRDPSPERFPVECKLRTVQTPQPSQPHQT
PKPTPAIGKRPLLHPEPEHRHLPDPRPSKKRRAQEIDKPTAKRPKTNNQH
LILSPGYSFQTTRAPIAKSDFMFPVLLEEGSAKPKWAACLLCCSAPSPKA
FIYFKKLPLKKSRLHTHFNTSHRAFMGEQKYTCLDPDQKIAFIRKGVSTF
DVFKNNNHIRSLESSPNWNCHEFDRLFRSYSSFADLRSFAVQNFDQGPAK
SHEAKKSARPTATKQKVSDRPFSNTRKLLGLEPVPSTQGREKKIRKQLSN
LFNQGSKDVKETASPSFCTKDPEHSCGRRNLTNDTELQSDIFRFTRNPIE
GTLSGAIAYKNLKQWIRGSGRRAHENIQLLVLGDMLGDPLNDNSATANNA
FLNPISFHSLNELDSPEERSGKRSNFRPLSVLTLFYLMRGVPCPVIAELV
DAMTAGEQNGANERAGSILPLIVQGGNSMCAENLRLMRNALDEEHQYNWA
LVLLTRPCPELDEDGVEVLVAVRNCKMVRCDLHVVSVRLAEGIDDRILPF
FDAICTDWKRRFVGINSGIDGSDLKRKAVERKLFEVLQAVEGVEEVRLID
KEVGRDGRPIFSDVVADMSDEDFSDFVDWHEKRFEKYLSKARLISARKAL
VQSGRVKDGYGAQPTSEPNNTDLYHNRELQLSVQDWVPFDELRDFAYTLK
PLYEKFGELTNQSGCIRAGVTCGRMRYEKTIVDAGLERVFHARSLMKAWC
MTKIGEGKVPSPKTRSQMSIWEDNWSNAMREVQSEKSE*
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mRNA from alignment at tig00000016_pilon:8007..10523-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10176.t1 ID=Ggra10176.t1|Name=Ggra10176.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=2517bp|location=Sequence derived from alignment at tig00000016_pilon:8007..10523- (Gracilaria gracilis GNS1m male)
ATGAAGCTCACGGATACCACCAAATGCAAGCAAGCTGCCGCGCTCGCCGC
AGTCAATCTGCCGGAAATCCAGCCACTGCCGCCCTCGTCCACGGCACCCT
CAGCCTCCACAGCAGTTCCAGCTTCAGTGCTGATCCCTGCGTCGATACAG
CCTGCTGTCGCCAATGGCACGCCGGCAGTCAAGTCGGAGCCAACCAGCGC
CTCATGGATGATTTCGAGAGATCCTTCGCCGGAGAGGTTTCCTGTGGAGT
GCAAGCTGCGTACAGTACAAACGCCACAACCTTCACAACCGCACCAGACG
CCGAAGCCAACTCCTGCTATTGGCAAAAGGCCTTTGCTGCACCCAGAACC
CGAGCATCGCCATCTGCCCGACCCTAGACCTTCGAAGAAGAGACGTGCTC
AAGAAATCGACAAGCCTACCGCAAAGCGTCCTAAGACCAACAACCAGCAC
TTGATCTTATCTCCAGGGTATAGCTTCCAGACGACTCGTGCTCCTATAGC
GAAAAGCGATTTCATGTTCCCGGTCTTGCTGGAGGAAGGGAGTGCAAAGC
CGAAATGGGCTGCGTGCCTTCTGTGTTGCTCCGCACCCTCTCCGAAAGCC
TTCATATATTTCAAAAAGCTTCCACTCAAAAAATCTAGGCTCCACACTCA
CTTCAATACATCTCACCGCGCTTTTATGGGTGAACAAAAGTACACTTGCC
TGGACCCAGATCAGAAGATCGCATTCATACGGAAAGGTGTTTCAACTTTT
GATGTCTTCAAGAACAACAACCACATTCGAAGCTTGGAAAGCTCTCCCAA
TTGGAACTGCCATGAGTTTGATCGTCTCTTCCGCTCCTACTCTTCCTTCG
CAGATCTTCGTTCATTTGCAGTACAAAACTTTGATCAAGGACCAGCCAAA
TCTCACGAAGCAAAGAAAAGCGCTCGACCAACTGCTACGAAGCAGAAAGT
GAGTGACAGGCCGTTTTCGAATACGAGAAAGTTGTTGGGTCTAGAGCCTG
TACCTTCGACGCAAGGTCGAGAAAAAAAGATAAGGAAACAGCTATCCAAC
CTGTTCAATCAGGGCAGCAAAGATGTCAAGGAAACCGCTTCTCCATCTTT
TTGTACTAAAGATCCTGAACACAGTTGCGGTCGACGAAACCTTACGAATG
ACACGGAGCTGCAATCAGATATTTTTCGATTCACACGCAATCCTATCGAA
GGAACGTTGAGTGGTGCGATTGCGTACAAAAATCTTAAACAGTGGATTCG
AGGCAGTGGGAGACGGGCACATGAGAATATACAACTGCTGGTTTTGGGGG
ACATGCTGGGGGATCCATTGAATGACAATTCGGCGACAGCAAACAACGCC
TTTCTCAACCCGATATCATTCCATTCGCTCAACGAGCTGGATTCTCCTGA
GGAAAGGTCGGGAAAAAGAAGTAACTTCCGCCCTTTGTCAGTGTTAACGT
TATTCTATCTGATGCGAGGTGTACCATGTCCTGTGATTGCAGAACTTGTC
GATGCTATGACAGCCGGAGAACAAAACGGTGCGAATGAGCGCGCTGGCAG
CATCTTGCCATTGATTGTACAAGGGGGGAACTCTATGTGCGCGGAGAACT
TGCGATTGATGCGAAATGCACTTGATGAAGAGCATCAGTACAACTGGGCC
TTAGTGCTTCTGACGCGCCCATGCCCGGAACTTGATGAGGACGGCGTGGA
GGTTTTGGTTGCGGTGCGCAATTGCAAAATGGTACGATGCGATTTGCATG
TTGTATCAGTCCGTCTTGCGGAGGGTATTGATGACCGAATACTACCGTTC
TTCGATGCAATTTGTACAGACTGGAAAAGGCGATTTGTAGGGATCAACTC
CGGAATTGACGGCTCAGACCTCAAGCGAAAGGCGGTGGAACGAAAGCTTT
TCGAAGTGTTGCAGGCCGTGGAAGGTGTGGAAGAAGTTCGATTGATTGAT
AAGGAAGTGGGCAGAGATGGAAGACCAATCTTCTCAGATGTTGTGGCAGA
TATGAGTGATGAAGACTTTTCAGATTTCGTAGATTGGCATGAGAAACGGT
TCGAGAAGTACCTGAGCAAGGCACGATTGATAAGCGCTCGCAAAGCGCTT
GTTCAAAGTGGACGTGTTAAAGATGGATATGGAGCACAACCGACTTCCGA
ACCAAACAACACTGACCTGTATCACAACCGCGAATTGCAGCTCTCTGTGC
AGGATTGGGTGCCCTTCGACGAATTAAGAGACTTTGCGTACACTTTGAAA
CCGCTATACGAAAAGTTTGGGGAGCTCACGAACCAGAGCGGGTGCATTCG
TGCAGGCGTGACTTGTGGCAGGATGAGATATGAGAAGACGATTGTCGACG
CTGGGTTGGAACGTGTCTTTCATGCACGATCCTTGATGAAGGCGTGGTGT
ATGACGAAGATCGGGGAGGGCAAGGTGCCCTCCCCGAAAACACGGAGCCA
GATGTCCATCTGGGAGGATAATTGGTCCAATGCCATGCGCGAGGTACAGT
CAGAGAAATCTGAATAG
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Coding sequence (CDS) from alignment at tig00000016_pilon:8007..10523-

>Ggra10176.t1 ID=Ggra10176.t1|Name=Ggra10176.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=2517bp|location=Sequence derived from alignment at tig00000016_pilon:8007..10523- (Gracilaria gracilis GNS1m male)
ATGAAGCTCACGGATACCACCAAATGCAAGCAAGCTGCCGCGCTCGCCGC
AGTCAATCTGCCGGAAATCCAGCCACTGCCGCCCTCGTCCACGGCACCCT
CAGCCTCCACAGCAGTTCCAGCTTCAGTGCTGATCCCTGCGTCGATACAG
CCTGCTGTCGCCAATGGCACGCCGGCAGTCAAGTCGGAGCCAACCAGCGC
CTCATGGATGATTTCGAGAGATCCTTCGCCGGAGAGGTTTCCTGTGGAGT
GCAAGCTGCGTACAGTACAAACGCCACAACCTTCACAACCGCACCAGACG
CCGAAGCCAACTCCTGCTATTGGCAAAAGGCCTTTGCTGCACCCAGAACC
CGAGCATCGCCATCTGCCCGACCCTAGACCTTCGAAGAAGAGACGTGCTC
AAGAAATCGACAAGCCTACCGCAAAGCGTCCTAAGACCAACAACCAGCAC
TTGATCTTATCTCCAGGGTATAGCTTCCAGACGACTCGTGCTCCTATAGC
GAAAAGCGATTTCATGTTCCCGGTCTTGCTGGAGGAAGGGAGTGCAAAGC
CGAAATGGGCTGCGTGCCTTCTGTGTTGCTCCGCACCCTCTCCGAAAGCC
TTCATATATTTCAAAAAGCTTCCACTCAAAAAATCTAGGCTCCACACTCA
CTTCAATACATCTCACCGCGCTTTTATGGGTGAACAAAAGTACACTTGCC
TGGACCCAGATCAGAAGATCGCATTCATACGGAAAGGTGTTTCAACTTTT
GATGTCTTCAAGAACAACAACCACATTCGAAGCTTGGAAAGCTCTCCCAA
TTGGAACTGCCATGAGTTTGATCGTCTCTTCCGCTCCTACTCTTCCTTCG
CAGATCTTCGTTCATTTGCAGTACAAAACTTTGATCAAGGACCAGCCAAA
TCTCACGAAGCAAAGAAAAGCGCTCGACCAACTGCTACGAAGCAGAAAGT
GAGTGACAGGCCGTTTTCGAATACGAGAAAGTTGTTGGGTCTAGAGCCTG
TACCTTCGACGCAAGGTCGAGAAAAAAAGATAAGGAAACAGCTATCCAAC
CTGTTCAATCAGGGCAGCAAAGATGTCAAGGAAACCGCTTCTCCATCTTT
TTGTACTAAAGATCCTGAACACAGTTGCGGTCGACGAAACCTTACGAATG
ACACGGAGCTGCAATCAGATATTTTTCGATTCACACGCAATCCTATCGAA
GGAACGTTGAGTGGTGCGATTGCGTACAAAAATCTTAAACAGTGGATTCG
AGGCAGTGGGAGACGGGCACATGAGAATATACAACTGCTGGTTTTGGGGG
ACATGCTGGGGGATCCATTGAATGACAATTCGGCGACAGCAAACAACGCC
TTTCTCAACCCGATATCATTCCATTCGCTCAACGAGCTGGATTCTCCTGA
GGAAAGGTCGGGAAAAAGAAGTAACTTCCGCCCTTTGTCAGTGTTAACGT
TATTCTATCTGATGCGAGGTGTACCATGTCCTGTGATTGCAGAACTTGTC
GATGCTATGACAGCCGGAGAACAAAACGGTGCGAATGAGCGCGCTGGCAG
CATCTTGCCATTGATTGTACAAGGGGGGAACTCTATGTGCGCGGAGAACT
TGCGATTGATGCGAAATGCACTTGATGAAGAGCATCAGTACAACTGGGCC
TTAGTGCTTCTGACGCGCCCATGCCCGGAACTTGATGAGGACGGCGTGGA
GGTTTTGGTTGCGGTGCGCAATTGCAAAATGGTACGATGCGATTTGCATG
TTGTATCAGTCCGTCTTGCGGAGGGTATTGATGACCGAATACTACCGTTC
TTCGATGCAATTTGTACAGACTGGAAAAGGCGATTTGTAGGGATCAACTC
CGGAATTGACGGCTCAGACCTCAAGCGAAAGGCGGTGGAACGAAAGCTTT
TCGAAGTGTTGCAGGCCGTGGAAGGTGTGGAAGAAGTTCGATTGATTGAT
AAGGAAGTGGGCAGAGATGGAAGACCAATCTTCTCAGATGTTGTGGCAGA
TATGAGTGATGAAGACTTTTCAGATTTCGTAGATTGGCATGAGAAACGGT
TCGAGAAGTACCTGAGCAAGGCACGATTGATAAGCGCTCGCAAAGCGCTT
GTTCAAAGTGGACGTGTTAAAGATGGATATGGAGCACAACCGACTTCCGA
ACCAAACAACACTGACCTGTATCACAACCGCGAATTGCAGCTCTCTGTGC
AGGATTGGGTGCCCTTCGACGAATTAAGAGACTTTGCGTACACTTTGAAA
CCGCTATACGAAAAGTTTGGGGAGCTCACGAACCAGAGCGGGTGCATTCG
TGCAGGCGTGACTTGTGGCAGGATGAGATATGAGAAGACGATTGTCGACG
CTGGGTTGGAACGTGTCTTTCATGCACGATCCTTGATGAAGGCGTGGTGT
ATGACGAAGATCGGGGAGGGCAAGGTGCCCTCCCCGAAAACACGGAGCCA
GATGTCCATCTGGGAGGATAATTGGTCCAATGCCATGCGCGAGGTACAGT
CAGAGAAATCTGAATAG
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