Ggra590.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra590.t1
Unique NameGgra590.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length453
Homology
[Close]
BLAST of Ggra590.t1 vs. uniprot
Match: A0A2V3IIK4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IIK4_9FLOR)

HSP 1 Score: 71.6 bits (174), Expect = 9.480e-10
Identity = 37/107 (34.58%), Postives = 61/107 (57.01%), Query Frame = 0 
Query:   19 EFIIQVDEPVWNVILYICLNLVALPALEFLADRLVRKTASLKVLEDEKVLLSDSKLGILSLYSTYYGRRRSLSFMILLGVMVIIMETFAEFCSSSAELSEKIQVDVW 125
            + ++ +D   WNV+ +I L ++  P LEFL  R +   A+  V+  E V  ++S LG+LSL+S Y+GRRR+  +++L+  +V   E   EF  S+  L      +VW
Sbjct:    3 DIVLNLDPSTWNVLKFIILTIITTPLLEFLLQRFINTKATYDVMRGEHVQFAESNLGVLSLHSVYWGRRRNSIYLLLVASLVFASELIFEFSFSAQALDIAEPREVW 109
The following BLAST results are available for this feature:
BLAST of Ggra590.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IIK49.480e-1034.58Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 45..65
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 354..376
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 108..353
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 377..452
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..27
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 28..49
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 50..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 90..107
NoneNo IPR availableTMHMMTMhelixcoord: 27..49
NoneNo IPR availableTMHMMTMhelixcoord: 90..107
NoneNo IPR availableTMHMMTMhelixcoord: 354..376

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:19216..20864 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra590.t1Ggra590.t1Gracilaria gracilis GNS1m malemRNAtig00000203_pilon 19216..20864 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra590.t1 ID=Ggra590.t1|Name=Ggra590.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=453bp
MSENIALEQPKHCLSEIPEFIIQVDEPVWNVILYICLNLVALPALEFLAD
RLVRKTASLKVLEDEKVLLSDSKLGILSLYSTYYGRRRSLSFMILLGVMV
IIMETFAEFCSSSAELSEKIQVDVWRISETHNFSYINGSQGEIREQRPRG
DSENGINDFDSKGNVTFREDRLESVLHSKDCIFGGEDLVLQQNDSGRTSV
NKSHEEAYTCLQIFEDDDCGETCESVACAIFASRNFTLGFGFGEGSIANT
KNGQIAEIGRWRMESIAPVSKRRPKNLSKLLTLSERSVRFVVRMYLEGYI
WASENEEVERRRVVTMTRYVRSISSEALVNGELRELQPRLIQPGPENVRQ
VPTITVLAAIPLLLFLVIVLVQLVILRRLERKIRLRKAIRGVTKGAARVG
TSMQWLRKDFVKLLEGQGFHTELGDISLRLVSMDGKSQLGILPRVVANNK
QP*
back to top