Ggra602.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra602.t1
Unique NameGgra602.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length543
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000203_piloncontigtig00000203_pilon:105921..107549 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36331.EPrPI00000016626
PFAMsPA,zf-RING_2
Max annot lvl121069|Pythiales
Evalue1.4e-15
EggNOG OGsKOG4628@1|root,KOG4628@2759|Eukaryota,1MENE@121069|Pythiales
DescriptionSource PGD
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra602Ggra602Gracilaria gracilis GNS1m malegenetig00000203_pilon 105921..107549 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra602.t1.stop1Ggra602.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000203_pilon 105921..105923 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra602.t1.CDS1Ggra602.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000203_pilon 105921..107549 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra602.t1.exon1Ggra602.t1.exon1Gracilaria gracilis GNS1m maleexontig00000203_pilon 105921..107549 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra602.t1.start1Ggra602.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000203_pilon 107547..107549 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra602.t1Ggra602.t1Gracilaria gracilis GNS1m malepolypeptidetig00000203_pilon 105921..107549 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra602.t1 ID=Ggra602.t1|Name=Ggra602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=543bp
MHQLRSRARPTAESSAQRPTRSTPVVSACPHASSFPFPLARAMLLLLLIL
PVATAIIITAPEACGGSRVVKHSTAFFGPNADGSAIANCNVPLFPPRAQR
DGAYVRLMSRVGRKHVHTLRSAAKSLFVGMVFGRVPDAVLLSDAPPQIPL
LETAAISVRARTTSDAWKNDPQKPAPTVGPTESPVPSSHTRQVLQSAPSY
EFIASAPRERPHAQSSPSLDPSAFALFDACCQLSVSADLQAVKGAVAVVA
RGVCDFAQKVRHMQDAGALGVIVVNFKDEGDHLANMKLNQSKTNPEINIP
AVMIRYRDWARIAPCWNETNIIFTSEGEAQGDYGHDALNWAMMRGMALWI
LCQCGVNVVRYKRRVSEYRARADAIAALPVETYHRNGHAEAPSTQEEVTP
LLADTSEPETSPIQPTANKAETSPAPSSSVMDHHAERVNLLHSQPQAGPS
CPLAPASAPSSSSTVPHEAVESEEEEPICAVCLEEFESGQQVRLLACSHL
YHRSCIDPWLQSSSNSCPLCKREIPNLPPPPTQLHYGSMLIS*
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spliced messenger RNA

>Ggra602.t1 ID=Ggra602.t1|Name=Ggra602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000203_pilon:105921..107549- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCATCAGCTGCGCAGTCGCGCCAGGCCAACCGCCGAAAGCAGCGCACA
GCGCCCAACTCGTAGCACCCCCGTCGTCAGTGCCTGTCCGCACGCGAGCT
CCTTCCCCTTCCCCTTAGCCCGCGCCATGCTGCTGCTGCTGCTCATTCTG
CCGGTCGCCACCGCCATCATCATAACCGCGCCTGAGGCGTGTGGCGGCTC
GCGAGTCGTCAAGCATTCCACCGCATTCTTCGGACCGAATGCGGATGGCT
CTGCTATCGCCAACTGCAACGTACCTTTGTTTCCACCTCGCGCGCAACGC
GATGGCGCTTATGTCCGCCTCATGTCGCGCGTCGGTCGGAAACATGTCCA
TACGCTGCGTTCCGCTGCGAAGTCATTGTTCGTCGGTATGGTGTTCGGTC
GCGTACCAGATGCTGTGCTGCTCTCAGATGCTCCACCACAGATTCCTCTG
CTTGAGACTGCTGCCATTTCCGTTCGTGCACGGACCACAAGCGACGCCTG
GAAGAATGACCCGCAAAAACCTGCACCCACCGTTGGTCCGACCGAATCGC
CCGTGCCGTCCTCTCATACGCGCCAGGTTCTACAAAGTGCTCCCTCCTAT
GAGTTTATAGCATCTGCTCCGCGGGAACGCCCCCATGCGCAGTCATCTCC
CTCTCTTGATCCTTCTGCGTTTGCTTTGTTTGATGCGTGCTGTCAACTTT
CGGTGTCTGCAGATCTTCAGGCGGTAAAGGGCGCCGTGGCCGTTGTAGCT
CGCGGAGTGTGTGACTTTGCACAGAAAGTTCGTCACATGCAGGATGCAGG
AGCTCTTGGAGTCATTGTGGTGAACTTTAAGGATGAAGGAGACCATCTTG
CGAATATGAAACTGAACCAGAGTAAGACCAACCCTGAAATTAACATCCCC
GCGGTGATGATACGTTATCGGGACTGGGCTAGAATAGCTCCATGCTGGAA
TGAGACAAATATTATATTTACCTCGGAAGGGGAAGCACAAGGGGACTATG
GACATGATGCTCTTAACTGGGCAATGATGAGAGGAATGGCTTTATGGATT
TTGTGTCAATGCGGCGTAAATGTTGTCAGATACAAACGCCGTGTTTCTGA
ATATCGCGCCCGCGCCGATGCGATAGCGGCCTTACCAGTGGAGACATATC
ATCGTAATGGCCATGCTGAGGCGCCATCCACGCAAGAGGAAGTTACTCCC
CTACTTGCGGACACCTCTGAACCCGAAACATCACCAATTCAACCAACTGC
TAACAAAGCCGAGACCTCGCCTGCTCCGTCTTCTTCTGTAATGGATCATC
ACGCAGAGCGAGTTAATCTTTTACACTCCCAACCTCAAGCAGGGCCTTCC
TGCCCTCTTGCTCCAGCATCGGCTCCGTCCTCATCGTCGACAGTTCCCCA
TGAAGCGGTGGAAAGCGAGGAGGAAGAACCTATATGTGCCGTTTGCCTCG
AAGAGTTTGAATCTGGGCAACAAGTACGCTTATTGGCGTGCTCTCATCTA
TACCACAGATCTTGCATCGACCCATGGCTTCAGTCAAGTTCGAATAGCTG
TCCACTCTGCAAAAGAGAGATTCCAAACTTACCACCTCCCCCCACCCAGT
TACACTATGGATCAATGCTCATCTCTTAA
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protein sequence of Ggra602.t1

>Ggra602.t1 ID=Ggra602.t1|Name=Ggra602.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=543bp
MHQLRSRARPTAESSAQRPTRSTPVVSACPHASSFPFPLARAMLLLLLIL
PVATAIIITAPEACGGSRVVKHSTAFFGPNADGSAIANCNVPLFPPRAQR
DGAYVRLMSRVGRKHVHTLRSAAKSLFVGMVFGRVPDAVLLSDAPPQIPL
LETAAISVRARTTSDAWKNDPQKPAPTVGPTESPVPSSHTRQVLQSAPSY
EFIASAPRERPHAQSSPSLDPSAFALFDACCQLSVSADLQAVKGAVAVVA
RGVCDFAQKVRHMQDAGALGVIVVNFKDEGDHLANMKLNQSKTNPEINIP
AVMIRYRDWARIAPCWNETNIIFTSEGEAQGDYGHDALNWAMMRGMALWI
LCQCGVNVVRYKRRVSEYRARADAIAALPVETYHRNGHAEAPSTQEEVTP
LLADTSEPETSPIQPTANKAETSPAPSSSVMDHHAERVNLLHSQPQAGPS
CPLAPASAPSSSSTVPHEAVESEEEEPICAVCLEEFESGQQVRLLACSHL
YHRSCIDPWLQSSSNSCPLCKREIPNLPPPPTQLHYGSMLIS*
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mRNA from alignment at tig00000203_pilon:105921..107549-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra602.t1 ID=Ggra602.t1|Name=Ggra602.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1629bp|location=Sequence derived from alignment at tig00000203_pilon:105921..107549- (Gracilaria gracilis GNS1m male)
ATGCATCAGCTGCGCAGTCGCGCCAGGCCAACCGCCGAAAGCAGCGCACA
GCGCCCAACTCGTAGCACCCCCGTCGTCAGTGCCTGTCCGCACGCGAGCT
CCTTCCCCTTCCCCTTAGCCCGCGCCATGCTGCTGCTGCTGCTCATTCTG
CCGGTCGCCACCGCCATCATCATAACCGCGCCTGAGGCGTGTGGCGGCTC
GCGAGTCGTCAAGCATTCCACCGCATTCTTCGGACCGAATGCGGATGGCT
CTGCTATCGCCAACTGCAACGTACCTTTGTTTCCACCTCGCGCGCAACGC
GATGGCGCTTATGTCCGCCTCATGTCGCGCGTCGGTCGGAAACATGTCCA
TACGCTGCGTTCCGCTGCGAAGTCATTGTTCGTCGGTATGGTGTTCGGTC
GCGTACCAGATGCTGTGCTGCTCTCAGATGCTCCACCACAGATTCCTCTG
CTTGAGACTGCTGCCATTTCCGTTCGTGCACGGACCACAAGCGACGCCTG
GAAGAATGACCCGCAAAAACCTGCACCCACCGTTGGTCCGACCGAATCGC
CCGTGCCGTCCTCTCATACGCGCCAGGTTCTACAAAGTGCTCCCTCCTAT
GAGTTTATAGCATCTGCTCCGCGGGAACGCCCCCATGCGCAGTCATCTCC
CTCTCTTGATCCTTCTGCGTTTGCTTTGTTTGATGCGTGCTGTCAACTTT
CGGTGTCTGCAGATCTTCAGGCGGTAAAGGGCGCCGTGGCCGTTGTAGCT
CGCGGAGTGTGTGACTTTGCACAGAAAGTTCGTCACATGCAGGATGCAGG
AGCTCTTGGAGTCATTGTGGTGAACTTTAAGGATGAAGGAGACCATCTTG
CGAATATGAAACTGAACCAGAGTAAGACCAACCCTGAAATTAACATCCCC
GCGGTGATGATACGTTATCGGGACTGGGCTAGAATAGCTCCATGCTGGAA
TGAGACAAATATTATATTTACCTCGGAAGGGGAAGCACAAGGGGACTATG
GACATGATGCTCTTAACTGGGCAATGATGAGAGGAATGGCTTTATGGATT
TTGTGTCAATGCGGCGTAAATGTTGTCAGATACAAACGCCGTGTTTCTGA
ATATCGCGCCCGCGCCGATGCGATAGCGGCCTTACCAGTGGAGACATATC
ATCGTAATGGCCATGCTGAGGCGCCATCCACGCAAGAGGAAGTTACTCCC
CTACTTGCGGACACCTCTGAACCCGAAACATCACCAATTCAACCAACTGC
TAACAAAGCCGAGACCTCGCCTGCTCCGTCTTCTTCTGTAATGGATCATC
ACGCAGAGCGAGTTAATCTTTTACACTCCCAACCTCAAGCAGGGCCTTCC
TGCCCTCTTGCTCCAGCATCGGCTCCGTCCTCATCGTCGACAGTTCCCCA
TGAAGCGGTGGAAAGCGAGGAGGAAGAACCTATATGTGCCGTTTGCCTCG
AAGAGTTTGAATCTGGGCAACAAGTACGCTTATTGGCGTGCTCTCATCTA
TACCACAGATCTTGCATCGACCCATGGCTTCAGTCAAGTTCGAATAGCTG
TCCACTCTGCAAAAGAGAGATTCCAAACTTACCACCTCCCCCCACCCAGT
TACACTATGGATCAATGCTCATCTCTTAA
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Coding sequence (CDS) from alignment at tig00000203_pilon:105921..107549-

>Ggra602.t1 ID=Ggra602.t1|Name=Ggra602.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1629bp|location=Sequence derived from alignment at tig00000203_pilon:105921..107549- (Gracilaria gracilis GNS1m male)
ATGCATCAGCTGCGCAGTCGCGCCAGGCCAACCGCCGAAAGCAGCGCACA
GCGCCCAACTCGTAGCACCCCCGTCGTCAGTGCCTGTCCGCACGCGAGCT
CCTTCCCCTTCCCCTTAGCCCGCGCCATGCTGCTGCTGCTGCTCATTCTG
CCGGTCGCCACCGCCATCATCATAACCGCGCCTGAGGCGTGTGGCGGCTC
GCGAGTCGTCAAGCATTCCACCGCATTCTTCGGACCGAATGCGGATGGCT
CTGCTATCGCCAACTGCAACGTACCTTTGTTTCCACCTCGCGCGCAACGC
GATGGCGCTTATGTCCGCCTCATGTCGCGCGTCGGTCGGAAACATGTCCA
TACGCTGCGTTCCGCTGCGAAGTCATTGTTCGTCGGTATGGTGTTCGGTC
GCGTACCAGATGCTGTGCTGCTCTCAGATGCTCCACCACAGATTCCTCTG
CTTGAGACTGCTGCCATTTCCGTTCGTGCACGGACCACAAGCGACGCCTG
GAAGAATGACCCGCAAAAACCTGCACCCACCGTTGGTCCGACCGAATCGC
CCGTGCCGTCCTCTCATACGCGCCAGGTTCTACAAAGTGCTCCCTCCTAT
GAGTTTATAGCATCTGCTCCGCGGGAACGCCCCCATGCGCAGTCATCTCC
CTCTCTTGATCCTTCTGCGTTTGCTTTGTTTGATGCGTGCTGTCAACTTT
CGGTGTCTGCAGATCTTCAGGCGGTAAAGGGCGCCGTGGCCGTTGTAGCT
CGCGGAGTGTGTGACTTTGCACAGAAAGTTCGTCACATGCAGGATGCAGG
AGCTCTTGGAGTCATTGTGGTGAACTTTAAGGATGAAGGAGACCATCTTG
CGAATATGAAACTGAACCAGAGTAAGACCAACCCTGAAATTAACATCCCC
GCGGTGATGATACGTTATCGGGACTGGGCTAGAATAGCTCCATGCTGGAA
TGAGACAAATATTATATTTACCTCGGAAGGGGAAGCACAAGGGGACTATG
GACATGATGCTCTTAACTGGGCAATGATGAGAGGAATGGCTTTATGGATT
TTGTGTCAATGCGGCGTAAATGTTGTCAGATACAAACGCCGTGTTTCTGA
ATATCGCGCCCGCGCCGATGCGATAGCGGCCTTACCAGTGGAGACATATC
ATCGTAATGGCCATGCTGAGGCGCCATCCACGCAAGAGGAAGTTACTCCC
CTACTTGCGGACACCTCTGAACCCGAAACATCACCAATTCAACCAACTGC
TAACAAAGCCGAGACCTCGCCTGCTCCGTCTTCTTCTGTAATGGATCATC
ACGCAGAGCGAGTTAATCTTTTACACTCCCAACCTCAAGCAGGGCCTTCC
TGCCCTCTTGCTCCAGCATCGGCTCCGTCCTCATCGTCGACAGTTCCCCA
TGAAGCGGTGGAAAGCGAGGAGGAAGAACCTATATGTGCCGTTTGCCTCG
AAGAGTTTGAATCTGGGCAACAAGTACGCTTATTGGCGTGCTCTCATCTA
TACCACAGATCTTGCATCGACCCATGGCTTCAGTCAAGTTCGAATAGCTG
TCCACTCTGCAAAAGAGAGATTCCAAACTTACCACCTCCCCCCACCCAGT
TACACTATGGATCAATGCTCATCTCTTAA
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