Ggra847.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra847.t1
Unique NameGgra847.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length309
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:90860..91786 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708256.1
Preferred nameSCS-alpha
PFAMsCoA_binding,Ligase_CoA
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00014
KEGG koko:K01899
KEGG ReactionR00432,R00727
KEGG Pathwayko00020,ko00640,ko01100,ko01110,ko01120,ko01130,ko01200,map00020,map00640,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00009,M00011
GOsGO:0003674,GO:0003824,GO:0004774,GO:0004775,GO:0004776,GO:0005488,GO:0005507,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0006082,GO:0006091,GO:0006099,GO:0006101,GO:0006104,GO:0006105,GO:0006139,GO:0006163,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009150,GO:0009259,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016874,GO:0016877,GO:0016878,GO:0016999,GO:0017144,GO:0019637,GO:0019693,GO:0019752,GO:0030312,GO:0031974,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035383,GO:0042221,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043648,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046483,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0051186,GO:0055086,GO:0055114,GO:0070013,GO:0071704,GO:0071944,GO:0072350,GO:0072521,GO:1901135,GO:1901360,GO:1901564
Evalue1.93e-146
EggNOG OGsCOG0074@1|root,KOG1255@2759|Eukaryota
EC6.2.1.4,6.2.1.5
Descriptionsuccinate-CoA ligase (GDP-forming) activity
COG categoryC
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra847Ggra847Gracilaria gracilis GNS1m malegenetig00000202_pilon 90860..91786 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra847.t1.start1Ggra847.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000202_pilon 90860..90862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra847.t1.CDS1Ggra847.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000202_pilon 90860..91786 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra847.t1.exon1Ggra847.t1.exon1Gracilaria gracilis GNS1m maleexontig00000202_pilon 90860..91786 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra847.t1.stop1Ggra847.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000202_pilon 91784..91786 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra847.t1Ggra847.t1Gracilaria gracilis GNS1m malepolypeptidetig00000202_pilon 90860..91786 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra847.t1 ID=Ggra847.t1|Name=Ggra847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=309bp
MASPALRSFSTRPAPYVSAATRVLFQGFTGKQGTFHAEQAIAYGTNIVGG
TNPKRAGQLHLDRPVFATVAEARAHTAADASAIFVPPAGAASAIEEAIVA
EMPLVVCITEGIPQKDMVRVKGLLTDATATRLIGPNCPGIIKPDQCKIGI
MPGHIHKPGSIGVVSRSGTLTYEAVNQTTEVGLGQSVCVGIGGDPFNGTD
FIDCLDMFLNDQETKGIVMIGEIGGQAEEQAAEFLKQHPVKKPVVAFIAG
VTAPPGRRMGHAGAIISGGKGTAADKIAALEAADARVVRSPATLGIAMLE
EMQNAGLA*
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spliced messenger RNA

>Ggra847.t1 ID=Ggra847.t1|Name=Ggra847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000202_pilon:90860..91786+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTCCCCCGCTCTCAGATCCTTCTCAACCAGGCCCGCTCCCTACGT
CTCAGCCGCTACGCGCGTTCTTTTCCAGGGCTTCACTGGCAAACAAGGCA
CCTTTCATGCCGAGCAAGCCATTGCGTATGGCACCAACATCGTCGGTGGA
ACCAATCCAAAGCGAGCCGGTCAACTTCATTTAGATCGTCCCGTGTTTGC
AACCGTTGCAGAAGCAAGGGCTCACACTGCTGCCGATGCCTCCGCCATAT
TCGTACCGCCCGCGGGCGCTGCTTCTGCTATTGAGGAAGCGATTGTTGCT
GAGATGCCTTTGGTGGTGTGCATTACTGAGGGCATTCCGCAGAAGGATAT
GGTTCGAGTTAAGGGTCTTCTGACAGATGCCACTGCTACTCGTCTTATAG
GTCCCAACTGCCCAGGCATTATCAAACCGGATCAATGTAAGATCGGTATT
ATGCCTGGACACATTCATAAACCAGGTTCGATAGGAGTGGTATCTAGATC
AGGAACCCTCACATATGAAGCCGTCAACCAGACCACTGAGGTCGGTCTTG
GTCAGAGTGTTTGCGTTGGAATTGGCGGCGATCCTTTCAATGGCACTGAC
TTCATCGATTGCCTTGACATGTTTCTAAACGACCAAGAGACAAAGGGCAT
CGTTATGATCGGCGAAATAGGCGGTCAAGCTGAGGAACAAGCTGCCGAGT
TTCTCAAACAGCACCCTGTGAAAAAACCCGTTGTGGCCTTCATTGCTGGC
GTCACTGCCCCTCCTGGCAGACGTATGGGACATGCGGGAGCCATCATCTC
TGGTGGTAAGGGTACTGCCGCCGATAAGATTGCTGCGTTAGAAGCGGCTG
ATGCTAGAGTTGTTCGAAGTCCTGCCACTCTTGGCATTGCCATGTTGGAA
GAAATGCAGAATGCGGGCTTGGCCTGA
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protein sequence of Ggra847.t1

>Ggra847.t1 ID=Ggra847.t1|Name=Ggra847.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=309bp
MASPALRSFSTRPAPYVSAATRVLFQGFTGKQGTFHAEQAIAYGTNIVGG
TNPKRAGQLHLDRPVFATVAEARAHTAADASAIFVPPAGAASAIEEAIVA
EMPLVVCITEGIPQKDMVRVKGLLTDATATRLIGPNCPGIIKPDQCKIGI
MPGHIHKPGSIGVVSRSGTLTYEAVNQTTEVGLGQSVCVGIGGDPFNGTD
FIDCLDMFLNDQETKGIVMIGEIGGQAEEQAAEFLKQHPVKKPVVAFIAG
VTAPPGRRMGHAGAIISGGKGTAADKIAALEAADARVVRSPATLGIAMLE
EMQNAGLA*
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mRNA from alignment at tig00000202_pilon:90860..91786+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra847.t1 ID=Ggra847.t1|Name=Ggra847.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=927bp|location=Sequence derived from alignment at tig00000202_pilon:90860..91786+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCCCCGCTCTCAGATCCTTCTCAACCAGGCCCGCTCCCTACGT
CTCAGCCGCTACGCGCGTTCTTTTCCAGGGCTTCACTGGCAAACAAGGCA
CCTTTCATGCCGAGCAAGCCATTGCGTATGGCACCAACATCGTCGGTGGA
ACCAATCCAAAGCGAGCCGGTCAACTTCATTTAGATCGTCCCGTGTTTGC
AACCGTTGCAGAAGCAAGGGCTCACACTGCTGCCGATGCCTCCGCCATAT
TCGTACCGCCCGCGGGCGCTGCTTCTGCTATTGAGGAAGCGATTGTTGCT
GAGATGCCTTTGGTGGTGTGCATTACTGAGGGCATTCCGCAGAAGGATAT
GGTTCGAGTTAAGGGTCTTCTGACAGATGCCACTGCTACTCGTCTTATAG
GTCCCAACTGCCCAGGCATTATCAAACCGGATCAATGTAAGATCGGTATT
ATGCCTGGACACATTCATAAACCAGGTTCGATAGGAGTGGTATCTAGATC
AGGAACCCTCACATATGAAGCCGTCAACCAGACCACTGAGGTCGGTCTTG
GTCAGAGTGTTTGCGTTGGAATTGGCGGCGATCCTTTCAATGGCACTGAC
TTCATCGATTGCCTTGACATGTTTCTAAACGACCAAGAGACAAAGGGCAT
CGTTATGATCGGCGAAATAGGCGGTCAAGCTGAGGAACAAGCTGCCGAGT
TTCTCAAACAGCACCCTGTGAAAAAACCCGTTGTGGCCTTCATTGCTGGC
GTCACTGCCCCTCCTGGCAGACGTATGGGACATGCGGGAGCCATCATCTC
TGGTGGTAAGGGTACTGCCGCCGATAAGATTGCTGCGTTAGAAGCGGCTG
ATGCTAGAGTTGTTCGAAGTCCTGCCACTCTTGGCATTGCCATGTTGGAA
GAAATGCAGAATGCGGGCTTGGCCTGA
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Coding sequence (CDS) from alignment at tig00000202_pilon:90860..91786+

>Ggra847.t1 ID=Ggra847.t1|Name=Ggra847.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=927bp|location=Sequence derived from alignment at tig00000202_pilon:90860..91786+ (Gracilaria gracilis GNS1m male)
ATGGCCTCCCCCGCTCTCAGATCCTTCTCAACCAGGCCCGCTCCCTACGT
CTCAGCCGCTACGCGCGTTCTTTTCCAGGGCTTCACTGGCAAACAAGGCA
CCTTTCATGCCGAGCAAGCCATTGCGTATGGCACCAACATCGTCGGTGGA
ACCAATCCAAAGCGAGCCGGTCAACTTCATTTAGATCGTCCCGTGTTTGC
AACCGTTGCAGAAGCAAGGGCTCACACTGCTGCCGATGCCTCCGCCATAT
TCGTACCGCCCGCGGGCGCTGCTTCTGCTATTGAGGAAGCGATTGTTGCT
GAGATGCCTTTGGTGGTGTGCATTACTGAGGGCATTCCGCAGAAGGATAT
GGTTCGAGTTAAGGGTCTTCTGACAGATGCCACTGCTACTCGTCTTATAG
GTCCCAACTGCCCAGGCATTATCAAACCGGATCAATGTAAGATCGGTATT
ATGCCTGGACACATTCATAAACCAGGTTCGATAGGAGTGGTATCTAGATC
AGGAACCCTCACATATGAAGCCGTCAACCAGACCACTGAGGTCGGTCTTG
GTCAGAGTGTTTGCGTTGGAATTGGCGGCGATCCTTTCAATGGCACTGAC
TTCATCGATTGCCTTGACATGTTTCTAAACGACCAAGAGACAAAGGGCAT
CGTTATGATCGGCGAAATAGGCGGTCAAGCTGAGGAACAAGCTGCCGAGT
TTCTCAAACAGCACCCTGTGAAAAAACCCGTTGTGGCCTTCATTGCTGGC
GTCACTGCCCCTCCTGGCAGACGTATGGGACATGCGGGAGCCATCATCTC
TGGTGGTAAGGGTACTGCCGCCGATAAGATTGCTGCGTTAGAAGCGGCTG
ATGCTAGAGTTGTTCGAAGTCCTGCCACTCTTGGCATTGCCATGTTGGAA
GAAATGCAGAATGCGGGCTTGGCCTGA
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