Ggra848.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra848.t1
Unique NameGgra848.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length536
Homology
[Close]
BLAST of Ggra848.t1 vs. uniprot
Match: A0A2V3J053 (PsbB mRNA maturation factor Mbb1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J053_9FLOR)

HSP 1 Score: 229 bits (585), Expect = 6.320e-65
Identity = 431/518 (83.20%), Postives = 464/518 (89.58%), Query Frame = 0 
Query:   21 PSTCARTPHRRPT---VRMTCAPYTPTPNDNSDIPPLPVLARLELRAGDPAAAARLLSKHLSETPTDARSWLAYGKASRKAHGDKHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRTVRRNKTAPLYTAYAGLEANRGKLERARFLYMRGAEADPKDKLVWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQEAADRVGEGKTAMLYMNXXXXXXXXXXXXXXXXXXKRGISSRKERPQDVVRLLHSXXXXXXXXXXXXXXXXXXXXALRINSRDYKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLEWKHFAKDGGIERARKLFAETARQRGGDASLLRVWAAFEEDQGDRDMADRLRILANRRK 535
            P+T    P RRP+   +RMTC P TPTP+DNSDIP LP LA+LELRAGD AAAARLLSKH+++ P DARSWLAYGKA R AHG K AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GV+ V+   TA LYTAYAGLEANRG  +RARFLYMR A  DPKDKLVWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EAA R+G+  +A+L+  XXXXXXXXXXXXXXXXXX+RG+S R ER  DVVRL+H XXXXXXXXXXXXXXXXXXXXALR+N+RDY+TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  LA+LEWKHF  DGG++RAR+LF+ T+RQ+  DASLLRVWA+ EEDQGD  +A+RLR LANR+K
Sbjct:   24 PATTTHAPPRRPSAKPLRMTCVPITPTPHDNSDIPALPTLAQLELRAGDFAAAARLLSKHVAQQPYDARSWLAYGKAVRTAHGPKQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETGVKRVQTASTAALYTAYAGLEANRGNAQRARFLYMRAAGVDPKDKLVWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAAQRLGKRNSALLFSXXXXXXXXXXXXXXXXXXXQRGVSGRSERRDDVVRLIHXXXXXXXXXXXXXXXXXXXXXALRVNARDYRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSLAILEWKHFGHDGGVDRARELFSRTSRQKRHDASLLRVWASLEEDQGDSGLAERLRSLANRKK 541
[Close]
BLAST of Ggra848.t1 vs. uniprot
Match: R7QHJ0 (TPR repeat-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ0_CHOCR)

HSP 1 Score: 108 bits (270), Expect = 1.650e-21
Identity = 310/478 (64.85%), Postives = 347/478 (72.59%), Query Frame = 0 
Query:   58 ARLELRAGDPAAAARLLSKHLSETPTDARSWLAYGKASRKAHGDKHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVRTVRRNKTAPLYTAYAGLEANRGKLERARFLYMRGAEADPKDKLVWHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFQEAADRVGE-GKTAMLYMNXXXXXXXXXXXXXXXXXXKRGISSRKERPQDVVRLLHSXXXXXXXXXXXXXXXXXXXXALRINSRDYKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAMLEWKHFAKDGGIERARKLFAETARQRGGDASLLRVWAAFEEDQGDRDMADRLRILANRR 534
            A LELRAGD AAAARL  +HL+  P DAR WL + KA R+A     A                                XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GV+ V + +   LY  YA L AN    ++ARFLYMRGAEADPKDKL+W               XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  EA +R+G+  + A++++ XXXXXXXXXXXXXXXXXX+ G   ++ERPQD+VRLLHS                    AL +N RD++TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    E KHFA++GG+ RAR+LF  T++Q    AS++R WA FEE QGD ++A RLR +A +R
Sbjct:   35 AHLELRAGDVAAAARLFDQHLTLRPDDARVWLDWAKAERRAD-PAAAAAILQRAVATVPRDPYLWHFRAACVTAANGKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGVKNVPKIRAVVLYAGYAQLAANGRMPDKARFLYMRGAEADPKDKLIWQAWACLEEREGNVSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAGERIGQDARAAVMFLGXXXXXXXXXXXXXXXXXXRAGSIRKRERPQDLVRLLHSWAGLERKEGEAEEARRLYRRALDLNERDHRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEAKHFAEEGGVGRARELFLRTSKQMRKPASVIRAWAGFEEQQGDAELATRLRCVAEKR 511
The following BLAST results are available for this feature:
BLAST of Ggra848.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J0536.320e-6583.20PsbB mRNA maturation factor Mbb1, chloroplastic n=... [more]
R7QHJ01.650e-2164.85TPR repeat-containing protein n=1 Tax=Chondrus cri... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019734Tetratricopeptide repeatSMARTSM00028tpr_5coord: 119..152
e-value: 130.0
score: 5.1
coord: 257..290
e-value: 400.0
score: 0.8
coord: 153..186
e-value: 66.0
score: 7.8
coord: 361..394
e-value: 430.0
score: 0.6
coord: 399..432
e-value: 0.35
score: 19.9
coord: 187..220
e-value: 67.0
score: 7.7
IPR003107HAT (Half-A-TPR) repeatSMARTSM00386hat_new_1coord: 133..165
e-value: 7.0
score: 15.6
coord: 167..199
e-value: 1.8
score: 17.6
coord: 271..303
e-value: 0.62
score: 19.1
coord: 375..411
e-value: 86.0
score: 8.6
coord: 447..479
e-value: 870.0
score: 1.2
coord: 413..445
e-value: 12.0
score: 14.8
coord: 237..269
e-value: 1.1
score: 18.3
coord: 65..97
e-value: 240.0
score: 5.4
coord: 305..337
e-value: 13.0
score: 14.5
coord: 485..517
e-value: 240.0
score: 5.3
coord: 201..235
e-value: 8.2
score: 15.4
coord: 339..373
e-value: 300.0
score: 4.6
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 396..533
e-value: 1.7E-15
score: 58.9
coord: 56..135
e-value: 1.6E-7
score: 32.8
coord: 280..395
e-value: 5.5E-22
score: 80.3
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 136..279
e-value: 2.6E-20
score: 74.9
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 189..395
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 56..214
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 395..525
IPR044624Tetratricopeptide-like repeat protein Mbb1-likePANTHERPTHR44917PROTEIN HIGH CHLOROPHYLL FLUORESCENT 107coord: 190..449
coord: 437..525
coord: 57..221
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..13
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..535
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:92405..94012 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra848.t1Ggra848.t1Gracilaria gracilis GNS1m malemRNAtig00000202_pilon 92405..94012 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra848.t1 ID=Ggra848.t1|Name=Ggra848.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MSSSFIAPAAVLARPARVQLPSTCARTPHRRPTVRMTCAPYTPTPNDNSD
IPPLPVLARLELRAGDPAAAARLLSKHLSETPTDARSWLAYGKASRKAHG
DKHAAQVMERAVTEVQDDAYVWHFYANCEAAASGKSSARKVYKRALENCP
QNAVLLSALASLESSVSNFETAAKLFRRAVQADSVDPYIYMQWAHMEMRR
KNFSEASNVFEKGVRTVRRNKTAPLYTAYAGLEANRGKLERARFLYMRGA
EADPKDKLVWHAWASLEHRVGNNPRARQLFERAIIADPSYPCNWQAWGIL
EERERNFNAARCLYERGTRADPRDPINWQAWALLEGRCGNVTEARRLFQE
AADRVGEGKTAMLYMNWARLEAVAGEVETARNLFKRGISSRKERPQDVVR
LLHSWAAIERREGNTEKARELYKRALRINSRDYKTLHAFSTLEREDENYD
VARELLKKSVRFSSGDIMAVRSLAMLEWKHFAKDGGIERARKLFAETARQ
RGGDASLLRVWAAFEEDQGDRDMADRLRILANRRK*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019734TPR_repeat
IPR003107HAT
IPR011990TPR-like_helical_dom_sf
IPR044624Mbb1-like