Ggra848.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra848.t1
Unique NameGgra848.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length536
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000202_piloncontigtig00000202_pilon:92405..94012 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra848Ggra848Gracilaria gracilis GNS1m malegenetig00000202_pilon 92405..94012 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra848.t1.stop1Ggra848.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000202_pilon 92405..92407 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra848.t1.CDS1Ggra848.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000202_pilon 92405..94012 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra848.t1.exon1Ggra848.t1.exon1Gracilaria gracilis GNS1m maleexontig00000202_pilon 92405..94012 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra848.t1.start1Ggra848.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000202_pilon 94010..94012 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra848.t1Ggra848.t1Gracilaria gracilis GNS1m malepolypeptidetig00000202_pilon 92405..94012 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra848.t1 ID=Ggra848.t1|Name=Ggra848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=536bp
MSSSFIAPAAVLARPARVQLPSTCARTPHRRPTVRMTCAPYTPTPNDNSD
IPPLPVLARLELRAGDPAAAARLLSKHLSETPTDARSWLAYGKASRKAHG
DKHAAQVMERAVTEVQDDAYVWHFYANCEAAASGKSSARKVYKRALENCP
QNAVLLSALASLESSVSNFETAAKLFRRAVQADSVDPYIYMQWAHMEMRR
KNFSEASNVFEKGVRTVRRNKTAPLYTAYAGLEANRGKLERARFLYMRGA
EADPKDKLVWHAWASLEHRVGNNPRARQLFERAIIADPSYPCNWQAWGIL
EERERNFNAARCLYERGTRADPRDPINWQAWALLEGRCGNVTEARRLFQE
AADRVGEGKTAMLYMNWARLEAVAGEVETARNLFKRGISSRKERPQDVVR
LLHSWAAIERREGNTEKARELYKRALRINSRDYKTLHAFSTLEREDENYD
VARELLKKSVRFSSGDIMAVRSLAMLEWKHFAKDGGIERARKLFAETARQ
RGGDASLLRVWAAFEEDQGDRDMADRLRILANRRK*
back to top

spliced messenger RNA

>Ggra848.t1 ID=Ggra848.t1|Name=Ggra848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000202_pilon:92405..94012- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAGTTCCTCTTTCATCGCGCCGGCTGCCGTTCTCGCGCGTCCTGCGCG
AGTGCAATTGCCGTCAACCTGTGCCCGCACCCCGCATCGCCGCCCGACAG
TACGCATGACCTGCGCACCATATACGCCAACCCCGAACGACAACTCGGAC
ATCCCACCGCTGCCAGTTCTTGCTCGGCTCGAGCTTCGCGCAGGAGATCC
AGCTGCAGCCGCCCGTCTCCTATCCAAACATCTTTCTGAAACGCCTACGG
ACGCCCGTTCCTGGCTTGCGTACGGGAAAGCGTCACGAAAAGCACACGGT
GACAAGCATGCCGCGCAAGTTATGGAACGTGCTGTAACAGAAGTGCAAGA
CGATGCGTATGTCTGGCACTTCTATGCCAATTGTGAGGCTGCGGCCTCTG
GAAAGTCTTCCGCCCGAAAGGTGTACAAGCGCGCCTTAGAGAATTGCCCG
CAGAACGCTGTCCTGTTGAGTGCGTTGGCTTCTTTGGAGAGCAGTGTGTC
CAATTTTGAAACAGCTGCCAAACTGTTTCGACGCGCTGTTCAAGCCGATT
CCGTCGATCCGTATATCTACATGCAGTGGGCTCACATGGAAATGCGTCGG
AAAAACTTCTCAGAGGCCTCAAACGTATTTGAAAAGGGCGTCAGGACCGT
GAGAAGAAACAAGACTGCCCCATTGTACACTGCGTATGCAGGTCTTGAAG
CCAACCGAGGCAAACTGGAGCGCGCGCGCTTTCTTTACATGCGTGGCGCA
GAAGCCGATCCAAAGGACAAGCTTGTGTGGCACGCATGGGCATCATTGGA
GCATCGCGTGGGAAACAATCCTCGAGCAAGGCAATTGTTTGAGCGTGCGA
TCATAGCCGATCCTTCCTACCCCTGCAACTGGCAAGCATGGGGTATTTTA
GAAGAACGGGAACGAAATTTCAATGCCGCTAGATGTTTGTATGAACGCGG
AACTAGAGCGGACCCGCGTGACCCGATCAATTGGCAGGCCTGGGCACTTC
TGGAGGGTCGTTGTGGAAATGTTACAGAGGCGAGACGGTTATTCCAGGAA
GCTGCAGATCGTGTTGGTGAGGGCAAGACCGCCATGCTCTACATGAACTG
GGCGCGCTTGGAAGCAGTCGCTGGCGAGGTTGAAACCGCCCGAAATCTCT
TCAAGCGGGGGATCAGCAGTCGGAAGGAGCGCCCTCAGGACGTGGTTCGG
TTGCTTCACTCCTGGGCTGCCATTGAACGCAGGGAAGGCAACACAGAGAA
GGCTAGAGAGTTGTACAAACGAGCGTTGCGTATCAATTCGCGCGATTACA
AGACGCTGCATGCCTTCTCGACGCTTGAGCGGGAGGATGAAAATTATGAC
GTAGCGAGAGAGTTGTTGAAGAAGAGTGTGAGATTCTCTTCGGGAGACAT
CATGGCGGTTCGATCACTTGCTATGCTTGAGTGGAAGCATTTTGCAAAGG
ATGGTGGTATTGAAAGGGCGCGGAAACTCTTTGCGGAAACGGCAAGGCAG
CGAGGTGGAGATGCTTCGTTGTTGCGCGTCTGGGCGGCCTTTGAGGAGGA
TCAGGGTGATCGCGATATGGCAGACAGATTGCGAATACTTGCAAACAGAA
GGAAATAA
back to top

protein sequence of Ggra848.t1

>Ggra848.t1 ID=Ggra848.t1|Name=Ggra848.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=536bp
MSSSFIAPAAVLARPARVQLPSTCARTPHRRPTVRMTCAPYTPTPNDNSD
IPPLPVLARLELRAGDPAAAARLLSKHLSETPTDARSWLAYGKASRKAHG
DKHAAQVMERAVTEVQDDAYVWHFYANCEAAASGKSSARKVYKRALENCP
QNAVLLSALASLESSVSNFETAAKLFRRAVQADSVDPYIYMQWAHMEMRR
KNFSEASNVFEKGVRTVRRNKTAPLYTAYAGLEANRGKLERARFLYMRGA
EADPKDKLVWHAWASLEHRVGNNPRARQLFERAIIADPSYPCNWQAWGIL
EERERNFNAARCLYERGTRADPRDPINWQAWALLEGRCGNVTEARRLFQE
AADRVGEGKTAMLYMNWARLEAVAGEVETARNLFKRGISSRKERPQDVVR
LLHSWAAIERREGNTEKARELYKRALRINSRDYKTLHAFSTLEREDENYD
VARELLKKSVRFSSGDIMAVRSLAMLEWKHFAKDGGIERARKLFAETARQ
RGGDASLLRVWAAFEEDQGDRDMADRLRILANRRK*
back to top

mRNA from alignment at tig00000202_pilon:92405..94012-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra848.t1 ID=Ggra848.t1|Name=Ggra848.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1608bp|location=Sequence derived from alignment at tig00000202_pilon:92405..94012- (Gracilaria gracilis GNS1m male)
ATGAGTTCCTCTTTCATCGCGCCGGCTGCCGTTCTCGCGCGTCCTGCGCG
AGTGCAATTGCCGTCAACCTGTGCCCGCACCCCGCATCGCCGCCCGACAG
TACGCATGACCTGCGCACCATATACGCCAACCCCGAACGACAACTCGGAC
ATCCCACCGCTGCCAGTTCTTGCTCGGCTCGAGCTTCGCGCAGGAGATCC
AGCTGCAGCCGCCCGTCTCCTATCCAAACATCTTTCTGAAACGCCTACGG
ACGCCCGTTCCTGGCTTGCGTACGGGAAAGCGTCACGAAAAGCACACGGT
GACAAGCATGCCGCGCAAGTTATGGAACGTGCTGTAACAGAAGTGCAAGA
CGATGCGTATGTCTGGCACTTCTATGCCAATTGTGAGGCTGCGGCCTCTG
GAAAGTCTTCCGCCCGAAAGGTGTACAAGCGCGCCTTAGAGAATTGCCCG
CAGAACGCTGTCCTGTTGAGTGCGTTGGCTTCTTTGGAGAGCAGTGTGTC
CAATTTTGAAACAGCTGCCAAACTGTTTCGACGCGCTGTTCAAGCCGATT
CCGTCGATCCGTATATCTACATGCAGTGGGCTCACATGGAAATGCGTCGG
AAAAACTTCTCAGAGGCCTCAAACGTATTTGAAAAGGGCGTCAGGACCGT
GAGAAGAAACAAGACTGCCCCATTGTACACTGCGTATGCAGGTCTTGAAG
CCAACCGAGGCAAACTGGAGCGCGCGCGCTTTCTTTACATGCGTGGCGCA
GAAGCCGATCCAAAGGACAAGCTTGTGTGGCACGCATGGGCATCATTGGA
GCATCGCGTGGGAAACAATCCTCGAGCAAGGCAATTGTTTGAGCGTGCGA
TCATAGCCGATCCTTCCTACCCCTGCAACTGGCAAGCATGGGGTATTTTA
GAAGAACGGGAACGAAATTTCAATGCCGCTAGATGTTTGTATGAACGCGG
AACTAGAGCGGACCCGCGTGACCCGATCAATTGGCAGGCCTGGGCACTTC
TGGAGGGTCGTTGTGGAAATGTTACAGAGGCGAGACGGTTATTCCAGGAA
GCTGCAGATCGTGTTGGTGAGGGCAAGACCGCCATGCTCTACATGAACTG
GGCGCGCTTGGAAGCAGTCGCTGGCGAGGTTGAAACCGCCCGAAATCTCT
TCAAGCGGGGGATCAGCAGTCGGAAGGAGCGCCCTCAGGACGTGGTTCGG
TTGCTTCACTCCTGGGCTGCCATTGAACGCAGGGAAGGCAACACAGAGAA
GGCTAGAGAGTTGTACAAACGAGCGTTGCGTATCAATTCGCGCGATTACA
AGACGCTGCATGCCTTCTCGACGCTTGAGCGGGAGGATGAAAATTATGAC
GTAGCGAGAGAGTTGTTGAAGAAGAGTGTGAGATTCTCTTCGGGAGACAT
CATGGCGGTTCGATCACTTGCTATGCTTGAGTGGAAGCATTTTGCAAAGG
ATGGTGGTATTGAAAGGGCGCGGAAACTCTTTGCGGAAACGGCAAGGCAG
CGAGGTGGAGATGCTTCGTTGTTGCGCGTCTGGGCGGCCTTTGAGGAGGA
TCAGGGTGATCGCGATATGGCAGACAGATTGCGAATACTTGCAAACAGAA
GGAAATAA
back to top

Coding sequence (CDS) from alignment at tig00000202_pilon:92405..94012-

>Ggra848.t1 ID=Ggra848.t1|Name=Ggra848.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1608bp|location=Sequence derived from alignment at tig00000202_pilon:92405..94012- (Gracilaria gracilis GNS1m male)
ATGAGTTCCTCTTTCATCGCGCCGGCTGCCGTTCTCGCGCGTCCTGCGCG
AGTGCAATTGCCGTCAACCTGTGCCCGCACCCCGCATCGCCGCCCGACAG
TACGCATGACCTGCGCACCATATACGCCAACCCCGAACGACAACTCGGAC
ATCCCACCGCTGCCAGTTCTTGCTCGGCTCGAGCTTCGCGCAGGAGATCC
AGCTGCAGCCGCCCGTCTCCTATCCAAACATCTTTCTGAAACGCCTACGG
ACGCCCGTTCCTGGCTTGCGTACGGGAAAGCGTCACGAAAAGCACACGGT
GACAAGCATGCCGCGCAAGTTATGGAACGTGCTGTAACAGAAGTGCAAGA
CGATGCGTATGTCTGGCACTTCTATGCCAATTGTGAGGCTGCGGCCTCTG
GAAAGTCTTCCGCCCGAAAGGTGTACAAGCGCGCCTTAGAGAATTGCCCG
CAGAACGCTGTCCTGTTGAGTGCGTTGGCTTCTTTGGAGAGCAGTGTGTC
CAATTTTGAAACAGCTGCCAAACTGTTTCGACGCGCTGTTCAAGCCGATT
CCGTCGATCCGTATATCTACATGCAGTGGGCTCACATGGAAATGCGTCGG
AAAAACTTCTCAGAGGCCTCAAACGTATTTGAAAAGGGCGTCAGGACCGT
GAGAAGAAACAAGACTGCCCCATTGTACACTGCGTATGCAGGTCTTGAAG
CCAACCGAGGCAAACTGGAGCGCGCGCGCTTTCTTTACATGCGTGGCGCA
GAAGCCGATCCAAAGGACAAGCTTGTGTGGCACGCATGGGCATCATTGGA
GCATCGCGTGGGAAACAATCCTCGAGCAAGGCAATTGTTTGAGCGTGCGA
TCATAGCCGATCCTTCCTACCCCTGCAACTGGCAAGCATGGGGTATTTTA
GAAGAACGGGAACGAAATTTCAATGCCGCTAGATGTTTGTATGAACGCGG
AACTAGAGCGGACCCGCGTGACCCGATCAATTGGCAGGCCTGGGCACTTC
TGGAGGGTCGTTGTGGAAATGTTACAGAGGCGAGACGGTTATTCCAGGAA
GCTGCAGATCGTGTTGGTGAGGGCAAGACCGCCATGCTCTACATGAACTG
GGCGCGCTTGGAAGCAGTCGCTGGCGAGGTTGAAACCGCCCGAAATCTCT
TCAAGCGGGGGATCAGCAGTCGGAAGGAGCGCCCTCAGGACGTGGTTCGG
TTGCTTCACTCCTGGGCTGCCATTGAACGCAGGGAAGGCAACACAGAGAA
GGCTAGAGAGTTGTACAAACGAGCGTTGCGTATCAATTCGCGCGATTACA
AGACGCTGCATGCCTTCTCGACGCTTGAGCGGGAGGATGAAAATTATGAC
GTAGCGAGAGAGTTGTTGAAGAAGAGTGTGAGATTCTCTTCGGGAGACAT
CATGGCGGTTCGATCACTTGCTATGCTTGAGTGGAAGCATTTTGCAAAGG
ATGGTGGTATTGAAAGGGCGCGGAAACTCTTTGCGGAAACGGCAAGGCAG
CGAGGTGGAGATGCTTCGTTGTTGCGCGTCTGGGCGGCCTTTGAGGAGGA
TCAGGGTGATCGCGATATGGCAGACAGATTGCGAATACTTGCAAACAGAA
GGAAATAA
back to top