Ggra10756.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10756.t1
Unique NameGgra10756.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length374
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000200_piloncontigtig00000200_pilon:144545..145738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708834.1
Preferred nameMCM2
PFAMsMCM,MCM2_N,MCM_N,MCM_OB
Max annot lvl2759|Eukaryota
KEGG koko:K02540
KEGG Pathwayko03030,ko04110,ko04111,ko04113,map03030,map04110,map04111,map04113
KEGG ModuleM00285
GOsGO:0000003,GO:0000082,GO:0000228,GO:0000278,GO:0000347,GO:0000724,GO:0000725,GO:0000727,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000808,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003688,GO:0003690,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005656,GO:0005657,GO:0005664,GO:0005694,GO:0005737,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006267,GO:0006268,GO:0006270,GO:0006271,GO:0006275,GO:0006279,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006725,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0008219,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009987,GO:0010015,GO:0010033,GO:0010073,GO:0010075,GO:0010082,GO:0010154,GO:0010556,GO:0010639,GO:0012501,GO:0015630,GO:0016043,GO:0019219,GO:0019222,GO:0019899,GO:0022402,GO:0022414,GO:0022607,GO:0022616,GO:0022622,GO:0030174,GO:0030261,GO:0031261,GO:0031298,GO:0031323,GO:0031326,GO:0031497,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032780,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033260,GO:0033554,GO:0034097,GO:0034622,GO:0034641,GO:0034645,GO:0034728,GO:0036387,GO:0036388,GO:0040008,GO:0042127,GO:0042221,GO:0042393,GO:0042555,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043462,GO:0043565,GO:0043583,GO:0043596,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0044843,GO:0045120,GO:0046483,GO:0048316,GO:0048364,GO:0048507,GO:0048509,GO:0048513,GO:0048519,GO:0048523,GO:0048608,GO:0048638,GO:0048731,GO:0048839,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051095,GO:0051097,GO:0051128,GO:0051129,GO:0051171,GO:0051239,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051716,GO:0060255,GO:0061458,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070670,GO:0070887,GO:0071103,GO:0071162,GO:0071310,GO:0071345,GO:0071353,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090102,GO:0090304,GO:0090329,GO:0097159,GO:0098687,GO:0099402,GO:1901360,GO:1901363,GO:1901576,GO:1902292,GO:1902299,GO:1902315,GO:1902449,GO:1902450,GO:1902969,GO:1902975,GO:1903046,GO:1903047,GO:1905392,GO:1905462,GO:1905463,GO:1905774,GO:1905775,GO:1990837,GO:2000026,GO:2000112,GO:2000280,GO:2001251
Evalue2.05e-65
EggNOG OGsCOG1241@1|root,KOG0477@2759|Eukaryota
EC3.6.4.12
Descriptionnegative regulation of DNA helicase activity
COG categoryL
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10756Ggra10756Gracilaria gracilis GNS1m malegenetig00000200_pilon 144545..145738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10756.t1Ggra10756.t1Gracilaria gracilis GNS1m malepolypeptidetig00000200_pilon 144545..145738 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10756.t1.start1Ggra10756.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000200_pilon 144545..144547 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10756.t1.CDS1Ggra10756.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000200_pilon 144545..145345 +
Ggra10756.t1.CDS2Ggra10756.t1.CDS2Gracilaria gracilis GNS1m maleCDStig00000200_pilon 145418..145738 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10756.t1.exon1Ggra10756.t1.exon1Gracilaria gracilis GNS1m maleexontig00000200_pilon 144545..145345 +
Ggra10756.t1.exon2Ggra10756.t1.exon2Gracilaria gracilis GNS1m maleexontig00000200_pilon 145418..145738 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10756.t1.intron1Ggra10756.t1.intron1Gracilaria gracilis GNS1m maleintrontig00000200_pilon 145346..145417 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10756.t1.stop1Ggra10756.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000200_pilon 145736..145738 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10756.t1 ID=Ggra10756.t1|Name=Ggra10756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=374bp
MGNDYRPLKQLDRYELDHVAENDQVAPMNVAARRHAERELNRPEIQSHRD
AQRALGAEVRMNDSDSEEEGDAGFQARRNRRLAIVAGSRALPDNASDAKA
SGAPNGSQTPVLSFGHDEVDASMRDDYPIDLDATAFREQPISQIVQEVRV
KRELSRRFESFLKSFTDQKTESFVYMDCIRAMAANNAQSLVIDFRHFALA
EPTVATWLADAPTPILEIYNQVATTLTFAIFNRYSRVKPEIYVRIADFPI
FDNLRDIRHMHLNALIKCHRLLTPPAISTMRPKRSIRSCPECESRGPFTI
NSEQSSFGNFQKLTLQERPGSVPAGSLPRYKEIIVLDDLFDCARPGEEVE
AVPIDITWTPPLTFRMASRCSRP*
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spliced messenger RNA

>Ggra10756.t1 ID=Ggra10756.t1|Name=Ggra10756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1122bp|location=Sequence derived from alignment at tig00000200_pilon:144545..145738+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCAATGATTATCGCCCGCTTAAACAGCTGGATCGCTATGAGCTGGA
TCACGTCGCTGAGAATGATCAAGTCGCTCCGATGAACGTTGCTGCGAGGA
GGCACGCTGAACGCGAGCTCAACCGCCCCGAAATTCAGTCCCATCGCGAT
GCTCAACGTGCTTTGGGTGCCGAGGTTCGCATGAATGACTCCGATTCGGA
GGAAGAAGGTGACGCTGGTTTTCAAGCTCGTCGCAATAGACGTCTGGCCA
TCGTTGCCGGTAGTCGCGCTCTTCCAGACAATGCTTCCGATGCAAAGGCT
TCTGGCGCACCAAATGGTTCGCAAACGCCCGTCCTCAGCTTTGGTCACGA
CGAAGTGGACGCTTCGATGCGCGATGATTACCCCATTGATTTGGACGCCA
CTGCCTTTCGAGAACAGCCCATCTCTCAAATTGTGCAAGAAGTGCGAGTT
AAACGCGAGCTTTCCAGAAGATTTGAAAGCTTTCTTAAGAGCTTTACGGA
TCAGAAGACGGAGTCCTTCGTGTACATGGACTGCATTCGAGCCATGGCTG
CCAACAATGCTCAGAGTCTTGTCATTGACTTCCGTCACTTCGCACTGGCT
GAACCCACTGTTGCTACATGGCTTGCAGATGCCCCTACTCCAATCCTTGA
GATTTACAACCAAGTCGCCACAACCCTAACCTTTGCCATTTTCAACCGTT
ACTCCCGTGTCAAGCCGGAGATTTATGTTCGCATTGCCGACTTTCCCATC
TTTGACAATCTTAGAGACATTCGTCATATGCATCTCAACGCGCTCATCAA
GTGTCACAGATTATTGACCCCTCCAGCCATTTCCACCATGAGACCAAAGC
GCAGTATCCGCTCATGCCCAGAATGCGAGTCAAGGGGTCCGTTTACGATC
AACTCTGAACAAAGTTCTTTCGGCAACTTCCAAAAGCTCACTTTGCAAGA
GAGACCCGGATCTGTTCCGGCCGGTAGCTTGCCAAGGTACAAGGAGATTA
TCGTTCTCGATGACCTTTTCGATTGTGCGAGACCTGGTGAAGAAGTTGAA
GCGGTACCTATCGACATAACATGGACGCCTCCATTAACGTTCAGAATGGC
TTCCCGGTGTTCTCGACCGTAA
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protein sequence of Ggra10756.t1

>Ggra10756.t1 ID=Ggra10756.t1|Name=Ggra10756.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=374bp
MGNDYRPLKQLDRYELDHVAENDQVAPMNVAARRHAERELNRPEIQSHRD
AQRALGAEVRMNDSDSEEEGDAGFQARRNRRLAIVAGSRALPDNASDAKA
SGAPNGSQTPVLSFGHDEVDASMRDDYPIDLDATAFREQPISQIVQEVRV
KRELSRRFESFLKSFTDQKTESFVYMDCIRAMAANNAQSLVIDFRHFALA
EPTVATWLADAPTPILEIYNQVATTLTFAIFNRYSRVKPEIYVRIADFPI
FDNLRDIRHMHLNALIKCHRLLTPPAISTMRPKRSIRSCPECESRGPFTI
NSEQSSFGNFQKLTLQERPGSVPAGSLPRYKEIIVLDDLFDCARPGEEVE
AVPIDITWTPPLTFRMASRCSRP*
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mRNA from alignment at tig00000200_pilon:144545..145738+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10756.t1 ID=Ggra10756.t1|Name=Ggra10756.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1194bp|location=Sequence derived from alignment at tig00000200_pilon:144545..145738+ (Gracilaria gracilis GNS1m male)
ATGGGCAATGATTATCGCCCGCTTAAACAGCTGGATCGCTATGAGCTGGA
TCACGTCGCTGAGAATGATCAAGTCGCTCCGATGAACGTTGCTGCGAGGA
GGCACGCTGAACGCGAGCTCAACCGCCCCGAAATTCAGTCCCATCGCGAT
GCTCAACGTGCTTTGGGTGCCGAGGTTCGCATGAATGACTCCGATTCGGA
GGAAGAAGGTGACGCTGGTTTTCAAGCTCGTCGCAATAGACGTCTGGCCA
TCGTTGCCGGTAGTCGCGCTCTTCCAGACAATGCTTCCGATGCAAAGGCT
TCTGGCGCACCAAATGGTTCGCAAACGCCCGTCCTCAGCTTTGGTCACGA
CGAAGTGGACGCTTCGATGCGCGATGATTACCCCATTGATTTGGACGCCA
CTGCCTTTCGAGAACAGCCCATCTCTCAAATTGTGCAAGAAGTGCGAGTT
AAACGCGAGCTTTCCAGAAGATTTGAAAGCTTTCTTAAGAGCTTTACGGA
TCAGAAGACGGAGTCCTTCGTGTACATGGACTGCATTCGAGCCATGGCTG
CCAACAATGCTCAGAGTCTTGTCATTGACTTCCGTCACTTCGCACTGGCT
GAACCCACTGTTGCTACATGGCTTGCAGATGCCCCTACTCCAATCCTTGA
GATTTACAACCAAGTCGCCACAACCCTAACCTTTGCCATTTTCAACCGTT
ACTCCCGTGTCAAGCCGGAGATTTATGTTCGCATTGCCGACTTTCCCATC
TTTGACAATCTTAGAGACATTCGTCATATGCATCTCAACGCGCTCATCAA
GGTCAGTGGTGTGGTCACCCGTCGTTCAAGCGTCTTCTCTCATCTTTGAA
ATGTCCGCCTCAATTGTGAAAAGTGTCACAGATTATTGACCCCTCCAGCC
ATTTCCACCATGAGACCAAAGCGCAGTATCCGCTCATGCCCAGAATGCGA
GTCAAGGGGTCCGTTTACGATCAACTCTGAACAAAGTTCTTTCGGCAACT
TCCAAAAGCTCACTTTGCAAGAGAGACCCGGATCTGTTCCGGCCGGTAGC
TTGCCAAGGTACAAGGAGATTATCGTTCTCGATGACCTTTTCGATTGTGC
GAGACCTGGTGAAGAAGTTGAAGCGGTACCTATCGACATAACATGGACGC
CTCCATTAACGTTCAGAATGGCTTCCCGGTGTTCTCGACCGTAA
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Coding sequence (CDS) from alignment at tig00000200_pilon:144545..145738+

>Ggra10756.t1 ID=Ggra10756.t1|Name=Ggra10756.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1122bp|location=Sequence derived from alignment at tig00000200_pilon:144545..145738+ (Gracilaria gracilis GNS1m male)
ATGGGCAATGATTATCGCCCGCTTAAACAGCTGGATCGCTATGAGCTGGA
TCACGTCGCTGAGAATGATCAAGTCGCTCCGATGAACGTTGCTGCGAGGA
GGCACGCTGAACGCGAGCTCAACCGCCCCGAAATTCAGTCCCATCGCGAT
GCTCAACGTGCTTTGGGTGCCGAGGTTCGCATGAATGACTCCGATTCGGA
GGAAGAAGGTGACGCTGGTTTTCAAGCTCGTCGCAATAGACGTCTGGCCA
TCGTTGCCGGTAGTCGCGCTCTTCCAGACAATGCTTCCGATGCAAAGGCT
TCTGGCGCACCAAATGGTTCGCAAACGCCCGTCCTCAGCTTTGGTCACGA
CGAAGTGGACGCTTCGATGCGCGATGATTACCCCATTGATTTGGACGCCA
CTGCCTTTCGAGAACAGCCCATCTCTCAAATTGTGCAAGAAGTGCGAGTT
AAACGCGAGCTTTCCAGAAGATTTGAAAGCTTTCTTAAGAGCTTTACGGA
TCAGAAGACGGAGTCCTTCGTGTACATGGACTGCATTCGAGCCATGGCTG
CCAACAATGCTCAGAGTCTTGTCATTGACTTCCGTCACTTCGCACTGGCT
GAACCCACTGTTGCTACATGGCTTGCAGATGCCCCTACTCCAATCCTTGA
GATTTACAACCAAGTCGCCACAACCCTAACCTTTGCCATTTTCAACCGTT
ACTCCCGTGTCAAGCCGGAGATTTATGTTCGCATTGCCGACTTTCCCATC
TTTGACAATCTTAGAGACATTCGTCATATGCATCTCAACGCGCTCATCAA
GTGTCACAGATTATTGACCCCTCCAGCCATTTCCACCATGAGACCAAAGC
GCAGTATCCGCTCATGCCCAGAATGCGAGTCAAGGGGTCCGTTTACGATC
AACTCTGAACAAAGTTCTTTCGGCAACTTCCAAAAGCTCACTTTGCAAGA
GAGACCCGGATCTGTTCCGGCCGGTAGCTTGCCAAGGTACAAGGAGATTA
TCGTTCTCGATGACCTTTTCGATTGTGCGAGACCTGGTGAAGAAGTTGAA
GCGGTACCTATCGACATAACATGGACGCCTCCATTAACGTTCAGAATGGC
TTCCCGGTGTTCTCGACCGTAA
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