Ggra10755.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10755.t1
Unique NameGgra10755.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length194
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000200_piloncontigtig00000200_pilon:132187..132768 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog57918.XP_004293108.1
PFAMsPlant_tran
Max annot lvl35493|Streptophyta
Evalue3.35e-21
EggNOG OGs28IUF@1|root,2QR5Z@2759|Eukaryota,37STI@33090|Viridiplantae,3GB85@35493|Streptophyta,4JTJK@91835|fabids
DescriptionRibosomal protein-like protein
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10755Ggra10755Gracilaria gracilis GNS1m malegenetig00000200_pilon 132187..132768 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10755.t1.stop1Ggra10755.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000200_pilon 132187..132189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10755.t1.CDS1Ggra10755.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000200_pilon 132187..132768 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10755.t1.exon1Ggra10755.t1.exon1Gracilaria gracilis GNS1m maleexontig00000200_pilon 132187..132768 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10755.t1.start1Ggra10755.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000200_pilon 132766..132768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10755.t1Ggra10755.t1Gracilaria gracilis GNS1m malepolypeptidetig00000200_pilon 132187..132768 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10755.t1 ID=Ggra10755.t1|Name=Ggra10755.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=194bp
MDNFPFHLSQAFKILASSVPRNLPYYLVDGIYPKWPIFAGPIHQPGSVQE
SRYTKRQEGTRKDIERFFAVLQARFKVLRDDIRLWFLGEIVTMSQAFVFL
HNMIIRMQQEGLFEEYFEEQDGQIDILTELLNSDIDYVQSTDKGGSGHAD
TSCEDLSTHLTEWESFIVRHGFVTSGIGHAKLKEDLIQRLGNC*
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spliced messenger RNA

>Ggra10755.t1 ID=Ggra10755.t1|Name=Ggra10755.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000200_pilon:132187..132768- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATAATTTTCCGTTCCATCTATCTCAAGCGTTTAAGATTTTGGCATC
GTCTGTTCCACGCAATCTGCCGTATTACCTTGTGGATGGGATATACCCAA
AATGGCCAATATTTGCTGGACCTATTCATCAGCCTGGTTCAGTGCAAGAA
AGTAGGTATACGAAGCGGCAAGAAGGAACAAGGAAGGATATAGAACGTTT
TTTTGCAGTTCTACAGGCGCGATTTAAGGTACTACGAGATGATATTAGAT
TGTGGTTTCTTGGCGAAATTGTTACAATGTCACAAGCATTTGTTTTTCTA
CACAATATGATCATCCGAATGCAGCAAGAGGGATTGTTTGAGGAGTACTT
TGAGGAGCAGGACGGACAAATTGATATTCTGACTGAACTACTAAACAGCG
ATATTGATTATGTACAAAGTACAGATAAAGGGGGCAGTGGACATGCTGAT
ACGAGTTGTGAGGACCTCTCCACACACTTGACCGAATGGGAGTCATTCAT
TGTTCGCCATGGGTTCGTTACGTCGGGCATAGGGCACGCAAAGCTGAAAG
AGGATCTCATTCAGAGATTGGGAAACTGCTAG
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protein sequence of Ggra10755.t1

>Ggra10755.t1 ID=Ggra10755.t1|Name=Ggra10755.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=194bp
MDNFPFHLSQAFKILASSVPRNLPYYLVDGIYPKWPIFAGPIHQPGSVQE
SRYTKRQEGTRKDIERFFAVLQARFKVLRDDIRLWFLGEIVTMSQAFVFL
HNMIIRMQQEGLFEEYFEEQDGQIDILTELLNSDIDYVQSTDKGGSGHAD
TSCEDLSTHLTEWESFIVRHGFVTSGIGHAKLKEDLIQRLGNC*
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mRNA from alignment at tig00000200_pilon:132187..132768-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10755.t1 ID=Ggra10755.t1|Name=Ggra10755.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=582bp|location=Sequence derived from alignment at tig00000200_pilon:132187..132768- (Gracilaria gracilis GNS1m male)
ATGGATAATTTTCCGTTCCATCTATCTCAAGCGTTTAAGATTTTGGCATC
GTCTGTTCCACGCAATCTGCCGTATTACCTTGTGGATGGGATATACCCAA
AATGGCCAATATTTGCTGGACCTATTCATCAGCCTGGTTCAGTGCAAGAA
AGTAGGTATACGAAGCGGCAAGAAGGAACAAGGAAGGATATAGAACGTTT
TTTTGCAGTTCTACAGGCGCGATTTAAGGTACTACGAGATGATATTAGAT
TGTGGTTTCTTGGCGAAATTGTTACAATGTCACAAGCATTTGTTTTTCTA
CACAATATGATCATCCGAATGCAGCAAGAGGGATTGTTTGAGGAGTACTT
TGAGGAGCAGGACGGACAAATTGATATTCTGACTGAACTACTAAACAGCG
ATATTGATTATGTACAAAGTACAGATAAAGGGGGCAGTGGACATGCTGAT
ACGAGTTGTGAGGACCTCTCCACACACTTGACCGAATGGGAGTCATTCAT
TGTTCGCCATGGGTTCGTTACGTCGGGCATAGGGCACGCAAAGCTGAAAG
AGGATCTCATTCAGAGATTGGGAAACTGCTAG
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Coding sequence (CDS) from alignment at tig00000200_pilon:132187..132768-

>Ggra10755.t1 ID=Ggra10755.t1|Name=Ggra10755.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=582bp|location=Sequence derived from alignment at tig00000200_pilon:132187..132768- (Gracilaria gracilis GNS1m male)
ATGGATAATTTTCCGTTCCATCTATCTCAAGCGTTTAAGATTTTGGCATC
GTCTGTTCCACGCAATCTGCCGTATTACCTTGTGGATGGGATATACCCAA
AATGGCCAATATTTGCTGGACCTATTCATCAGCCTGGTTCAGTGCAAGAA
AGTAGGTATACGAAGCGGCAAGAAGGAACAAGGAAGGATATAGAACGTTT
TTTTGCAGTTCTACAGGCGCGATTTAAGGTACTACGAGATGATATTAGAT
TGTGGTTTCTTGGCGAAATTGTTACAATGTCACAAGCATTTGTTTTTCTA
CACAATATGATCATCCGAATGCAGCAAGAGGGATTGTTTGAGGAGTACTT
TGAGGAGCAGGACGGACAAATTGATATTCTGACTGAACTACTAAACAGCG
ATATTGATTATGTACAAAGTACAGATAAAGGGGGCAGTGGACATGCTGAT
ACGAGTTGTGAGGACCTCTCCACACACTTGACCGAATGGGAGTCATTCAT
TGTTCGCCATGGGTTCGTTACGTCGGGCATAGGGCACGCAAAGCTGAAAG
AGGATCTCATTCAGAGATTGGGAAACTGCTAG
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