Ggra10240.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra10240.t1
Unique NameGgra10240.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length119
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000016_piloncontigtig00000016_pilon:187100..187456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra10240Ggra10240Gracilaria gracilis GNS1m malegenetig00000016_pilon 187100..187456 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10240.t1.stop1Ggra10240.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000016_pilon 187100..187102 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10240.t1.CDS1Ggra10240.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000016_pilon 187100..187456 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10240.t1.exon1Ggra10240.t1.exon1Gracilaria gracilis GNS1m maleexontig00000016_pilon 187100..187456 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10240.t1.start1Ggra10240.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000016_pilon 187454..187456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra10240.t1Ggra10240.t1Gracilaria gracilis GNS1m malepolypeptidetig00000016_pilon 187100..187456 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra10240.t1 ID=Ggra10240.t1|Name=Ggra10240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=119bp
MAAPALTATATSLTVFALGSVANVAASNKPLASRTWLPRGGFIGVINGNG
SAPVAVAESSTPAAPSSAATPASGRRRNVPIGGKTDKPAPPCPFGRFPKH
KPTKLPGPPKSYVPSNSP*
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spliced messenger RNA

>Ggra10240.t1 ID=Ggra10240.t1|Name=Ggra10240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000016_pilon:187100..187456- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCGCCCCAGCACTCACCGCAACTGCCACATCTCTCACCGTCTTCGC
GCTTGGTTCGGTTGCCAATGTCGCCGCTTCGAACAAGCCGCTTGCCTCGC
GCACGTGGCTACCCCGTGGCGGCTTCATCGGCGTTATCAATGGAAACGGA
TCAGCGCCCGTCGCCGTAGCGGAGTCTTCCACGCCTGCTGCTCCCAGTTC
GGCCGCAACTCCCGCGTCGGGCCGCCGCCGCAACGTGCCGATTGGAGGAA
AGACTGATAAACCGGCGCCGCCTTGCCCTTTTGGTCGCTTTCCAAAGCAT
AAGCCTACCAAGCTTCCGGGTCCCCCAAAGTCCTACGTCCCTTCTAACAG
CCCGTGA
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protein sequence of Ggra10240.t1

>Ggra10240.t1 ID=Ggra10240.t1|Name=Ggra10240.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=119bp
MAAPALTATATSLTVFALGSVANVAASNKPLASRTWLPRGGFIGVINGNG
SAPVAVAESSTPAAPSSAATPASGRRRNVPIGGKTDKPAPPCPFGRFPKH
KPTKLPGPPKSYVPSNSP*
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mRNA from alignment at tig00000016_pilon:187100..187456-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra10240.t1 ID=Ggra10240.t1|Name=Ggra10240.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=357bp|location=Sequence derived from alignment at tig00000016_pilon:187100..187456- (Gracilaria gracilis GNS1m male)
ATGGCCGCCCCAGCACTCACCGCAACTGCCACATCTCTCACCGTCTTCGC
GCTTGGTTCGGTTGCCAATGTCGCCGCTTCGAACAAGCCGCTTGCCTCGC
GCACGTGGCTACCCCGTGGCGGCTTCATCGGCGTTATCAATGGAAACGGA
TCAGCGCCCGTCGCCGTAGCGGAGTCTTCCACGCCTGCTGCTCCCAGTTC
GGCCGCAACTCCCGCGTCGGGCCGCCGCCGCAACGTGCCGATTGGAGGAA
AGACTGATAAACCGGCGCCGCCTTGCCCTTTTGGTCGCTTTCCAAAGCAT
AAGCCTACCAAGCTTCCGGGTCCCCCAAAGTCCTACGTCCCTTCTAACAG
CCCGTGA
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Coding sequence (CDS) from alignment at tig00000016_pilon:187100..187456-

>Ggra10240.t1 ID=Ggra10240.t1|Name=Ggra10240.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=357bp|location=Sequence derived from alignment at tig00000016_pilon:187100..187456- (Gracilaria gracilis GNS1m male)
ATGGCCGCCCCAGCACTCACCGCAACTGCCACATCTCTCACCGTCTTCGC
GCTTGGTTCGGTTGCCAATGTCGCCGCTTCGAACAAGCCGCTTGCCTCGC
GCACGTGGCTACCCCGTGGCGGCTTCATCGGCGTTATCAATGGAAACGGA
TCAGCGCCCGTCGCCGTAGCGGAGTCTTCCACGCCTGCTGCTCCCAGTTC
GGCCGCAACTCCCGCGTCGGGCCGCCGCCGCAACGTGCCGATTGGAGGAA
AGACTGATAAACCGGCGCCGCCTTGCCCTTTTGGTCGCTTTCCAAAGCAT
AAGCCTACCAAGCTTCCGGGTCCCCCAAAGTCCTACGTCCCTTCTAACAG
CCCGTGA
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