Ggra10802.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10802.t1
Unique Name	Ggra10802.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	258

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000198_pilon	contig	tig00000198_pilon:53059..53832 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	31033.ENSTRUP00000010116
Preferred name	COL6A2
PFAMs	Collagen,VWA
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K06238
KEGG Pathway	ko04151,ko04510,ko04512,ko04974,ko05165,map04151,map04510,map04512,map04974,map05165
GOs	GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005886,GO:0008150,GO:0009987,GO:0012505,GO:0016020,GO:0016043,GO:0022607,GO:0030198,GO:0031012,GO:0031974,GO:0032991,GO:0042383,GO:0043062,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0051259,GO:0051291,GO:0065003,GO:0070013,GO:0070206,GO:0070208,GO:0071840,GO:0071944
Evalue	9.53e-05
EggNOG OGs	KOG3544@1\|root,KOG3544@2759\|Eukaryota,38HT7@33154\|Opisthokonta,3BB1N@33208\|Metazoa,3CS6R@33213\|Bilateria,48BG6@7711\|Chordata,497E4@7742\|Vertebrata,49QHW@7898\|Actinopterygii
Description	Collagen, type VI, alpha 2
COG category	W
BRITE	ko00000,ko00001,ko00536,ko04147,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10802	Ggra10802	Gracilaria gracilis GNS1m male	gene	tig00000198_pilon 53059..53832 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10802.t1.start1	Ggra10802.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000198_pilon 53059..53061 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10802.t1.CDS1	Ggra10802.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000198_pilon 53059..53832 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10802.t1.exon1	Ggra10802.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000198_pilon 53059..53832 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10802.t1.stop1	Ggra10802.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000198_pilon 53830..53832 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10802.t1	Ggra10802.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000198_pilon 53059..53832 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000198_pilon:53059..53832+
coding sequence from alignment at tig00000198_pilon:53059..53832+

mRNA sequence

>Ggra10802.t1 ID=Ggra10802.t1|Name=Ggra10802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=258bp
MFIVANMFDRRSMLTVAVLFLTLSVGVSVEFSAENSKYEGWIRSRTDELV
AENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQK
ELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLG
NSKFSFLTAGLGACILRVQAGDSLYGNILVLGEGHENFARNFLPSVTSKL
RTEQVFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSI
CSIERDR*

spliced messenger RNA

>Ggra10802.t1 ID=Ggra10802.t1|Name=Ggra10802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000198_pilon:53059..53832+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCATAGTAGCCAACATGTTTGACCGCCGCTCTATGCTGACCGTTGC
CGTTCTGTTCCTGACGCTTTCAGTCGGAGTATCAGTCGAGTTTTCGGCTG
AAAACAGTAAATATGAGGGATGGATCCGTTCACGAACTGATGAATTAGTC
GCGGAGAATTCGTTGGCAGCTTCTATTGGCGTTCCATCTCTATTACAACT
GCAGCACAAGTTGCTTGATAACGATGGCTGTCCAGCTCGAATGTGCTTTG
CCATGGACGGAAGTGAAAGCGTATCCGTGCAGGAATATGAAGTGCAAAAA
GAACTGGTGATGCTAATCGCAACCATGGTCTCGCTACACAACAAAGCGGA
ATTCTCTGCCGTTCAGTACGGTGTTCCCAGCATCAATGTGGCCGATACCA
CGAAAGACATCTCTCAGTTCTTGCACGATGTCAAGAATTCCACGTTGGGT
AACTCCAAGTTCTCGTTCTTGACCGCCGGTCTTGGCGCCTGCATTCTCCG
CGTGCAAGCCGGAGACAGTCTATATGGAAACATTCTAGTGCTGGGGGAAG
GTCATGAGAACTTTGCGCGAAACTTTCTGCCCTCAGTGACCAGCAAATTG
AGAACTGAACAAGTGTTTGCGTTAGGTATTGGTCATGACATTGATGATGA
AATATTCCGCGAAATCACACGAGGCAACTCGTCGAACATATTCCGCGTTG
ACTCGTATGATGTCGTGAAAGACGTTGTGGATGTTGTTGTCTCTTCAATA
TGTTCAATAGAGCGCGATCGTTAA

protein sequence of Ggra10802.t1

>Ggra10802.t1 ID=Ggra10802.t1|Name=Ggra10802.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=258bp
MFIVANMFDRRSMLTVAVLFLTLSVGVSVEFSAENSKYEGWIRSRTDELV
AENSLAASIGVPSLLQLQHKLLDNDGCPARMCFAMDGSESVSVQEYEVQK
ELVMLIATMVSLHNKAEFSAVQYGVPSINVADTTKDISQFLHDVKNSTLG
NSKFSFLTAGLGACILRVQAGDSLYGNILVLGEGHENFARNFLPSVTSKL
RTEQVFALGIGHDIDDEIFREITRGNSSNIFRVDSYDVVKDVVDVVVSSI
CSIERDR*

mRNA from alignment at tig00000198_pilon:53059..53832+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10802.t1 ID=Ggra10802.t1|Name=Ggra10802.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=774bp|location=Sequence derived from alignment at tig00000198_pilon:53059..53832+ (Gracilaria gracilis GNS1m male)
ATGTTCATAGTAGCCAACATGTTTGACCGCCGCTCTATGCTGACCGTTGC
CGTTCTGTTCCTGACGCTTTCAGTCGGAGTATCAGTCGAGTTTTCGGCTG
AAAACAGTAAATATGAGGGATGGATCCGTTCACGAACTGATGAATTAGTC
GCGGAGAATTCGTTGGCAGCTTCTATTGGCGTTCCATCTCTATTACAACT
GCAGCACAAGTTGCTTGATAACGATGGCTGTCCAGCTCGAATGTGCTTTG
CCATGGACGGAAGTGAAAGCGTATCCGTGCAGGAATATGAAGTGCAAAAA
GAACTGGTGATGCTAATCGCAACCATGGTCTCGCTACACAACAAAGCGGA
ATTCTCTGCCGTTCAGTACGGTGTTCCCAGCATCAATGTGGCCGATACCA
CGAAAGACATCTCTCAGTTCTTGCACGATGTCAAGAATTCCACGTTGGGT
AACTCCAAGTTCTCGTTCTTGACCGCCGGTCTTGGCGCCTGCATTCTCCG
CGTGCAAGCCGGAGACAGTCTATATGGAAACATTCTAGTGCTGGGGGAAG
GTCATGAGAACTTTGCGCGAAACTTTCTGCCCTCAGTGACCAGCAAATTG
AGAACTGAACAAGTGTTTGCGTTAGGTATTGGTCATGACATTGATGATGA
AATATTCCGCGAAATCACACGAGGCAACTCGTCGAACATATTCCGCGTTG
ACTCGTATGATGTCGTGAAAGACGTTGTGGATGTTGTTGTCTCTTCAATA
TGTTCAATAGAGCGCGATCGTTAA

Coding sequence (CDS) from alignment at tig00000198_pilon:53059..53832+

>Ggra10802.t1 ID=Ggra10802.t1|Name=Ggra10802.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=774bp|location=Sequence derived from alignment at tig00000198_pilon:53059..53832+ (Gracilaria gracilis GNS1m male)
ATGTTCATAGTAGCCAACATGTTTGACCGCCGCTCTATGCTGACCGTTGC
CGTTCTGTTCCTGACGCTTTCAGTCGGAGTATCAGTCGAGTTTTCGGCTG
AAAACAGTAAATATGAGGGATGGATCCGTTCACGAACTGATGAATTAGTC
GCGGAGAATTCGTTGGCAGCTTCTATTGGCGTTCCATCTCTATTACAACT
GCAGCACAAGTTGCTTGATAACGATGGCTGTCCAGCTCGAATGTGCTTTG
CCATGGACGGAAGTGAAAGCGTATCCGTGCAGGAATATGAAGTGCAAAAA
GAACTGGTGATGCTAATCGCAACCATGGTCTCGCTACACAACAAAGCGGA
ATTCTCTGCCGTTCAGTACGGTGTTCCCAGCATCAATGTGGCCGATACCA
CGAAAGACATCTCTCAGTTCTTGCACGATGTCAAGAATTCCACGTTGGGT
AACTCCAAGTTCTCGTTCTTGACCGCCGGTCTTGGCGCCTGCATTCTCCG
CGTGCAAGCCGGAGACAGTCTATATGGAAACATTCTAGTGCTGGGGGAAG
GTCATGAGAACTTTGCGCGAAACTTTCTGCCCTCAGTGACCAGCAAATTG
AGAACTGAACAAGTGTTTGCGTTAGGTATTGGTCATGACATTGATGATGA
AATATTCCGCGAAATCACACGAGGCAACTCGTCGAACATATTCCGCGTTG
ACTCGTATGATGTCGTGAAAGACGTTGTGGATGTTGTTGTCTCTTCAATA
TGTTCAATAGAGCGCGATCGTTAA