Ggra6013.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGgra6013.t1
Unique NameGgra6013.t1
TypemRNA
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length311
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000197_piloncontigtig00000197_pilon:147163..148095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2903.EOD08134
PFAMsDUF1989
Max annot lvl2759|Eukaryota
GOsGO:0003674,GO:0003824
Evalue9.5e-84
EggNOG OGsCOG3665@1|root,2QSJ0@2759|Eukaryota
DescriptionDomain of unknown function (DUF1989)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra6013Ggra6013Gracilaria gracilis GNS1m malegenetig00000197_pilon 147163..148095 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6013.t1.stop1Ggra6013.t1.stop1Gracilaria gracilis GNS1m malestop_codontig00000197_pilon 147163..147165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6013.t1.CDS1Ggra6013.t1.CDS1Gracilaria gracilis GNS1m maleCDStig00000197_pilon 147163..148095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6013.t1.exon1Ggra6013.t1.exon1Gracilaria gracilis GNS1m maleexontig00000197_pilon 147163..148095 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6013.t1.start1Ggra6013.t1.start1Gracilaria gracilis GNS1m malestart_codontig00000197_pilon 148093..148095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Ggra6013.t1Ggra6013.t1Gracilaria gracilis GNS1m malepolypeptidetig00000197_pilon 147163..148095 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Ggra6013.t1 ID=Ggra6013.t1|Name=Ggra6013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=311bp
MNDDKDDEYKEQREWHTNANGRVFQRHKPVACYSLSEQQRAALSGELLGA
ISQTADSEREVVQQVTIPPCDARALEVPRGCIMRLELTHGSQVADVNVWN
AHNARERFYSAKTRQIHASHLSVGDSLWSCMPYVRPLATLVADSIAYGID
ADNAGVHDVIGSRCDPYTHALMTGGGEPCAAHHRTCHSNLTRAVLPWALT
EADVHDVFNVFMCTGFSRASGQYFVKRSPARKGDLIELFAHVHLLLAVSA
CAQGDVSTPCGSRERARCFPLRATVQRLPARALAAWTSPPPQCAPPRYHG
AHALRASFTY*
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spliced messenger RNA

>Ggra6013.t1 ID=Ggra6013.t1|Name=Ggra6013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000197_pilon:147163..148095- (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACGACGACAAGGACGACGAGTACAAGGAGCAGCGCGAGTGGCACAC
CAACGCCAACGGGCGCGTATTCCAGCGCCACAAGCCGGTGGCGTGCTACT
CGTTGAGCGAGCAGCAACGCGCGGCGCTATCCGGCGAGCTGTTGGGCGCC
ATCAGCCAAACGGCAGACAGCGAGCGCGAGGTGGTGCAACAAGTGACAAT
CCCGCCATGCGACGCTCGCGCGTTGGAGGTTCCGCGCGGGTGCATCATGC
GGCTGGAGCTGACGCACGGGTCGCAAGTGGCCGATGTGAACGTGTGGAAC
GCGCACAACGCGCGCGAGCGCTTCTACTCGGCCAAGACGCGGCAGATACA
CGCGTCGCACCTGAGCGTGGGCGACAGCCTGTGGTCGTGCATGCCGTACG
TGCGGCCGCTGGCCACGCTGGTGGCGGACTCCATCGCGTACGGCATCGAC
GCCGATAACGCCGGCGTGCACGACGTGATCGGCTCGCGCTGCGACCCGTA
CACGCACGCGCTCATGACGGGCGGCGGCGAGCCGTGCGCTGCGCACCACC
GCACGTGCCACAGCAACCTCACGCGCGCCGTACTGCCGTGGGCGCTGACG
GAGGCGGACGTGCACGACGTGTTCAACGTGTTCATGTGCACGGGCTTCAG
CCGCGCCAGCGGGCAGTACTTTGTGAAGCGCAGCCCGGCGCGAAAGGGCG
ACCTCATCGAACTGTTCGCGCACGTGCACCTGCTGCTGGCCGTGAGCGCG
TGCGCGCAGGGCGACGTGTCCACGCCGTGCGGCTCGCGTGAGCGCGCGCG
TTGCTTCCCGCTGCGCGCCACCGTGCAGCGGCTGCCCGCCCGCGCGCTGG
CCGCGTGGACGTCGCCGCCGCCGCAGTGCGCGCCGCCGCGCTACCACGGC
GCGCACGCGCTGCGCGCCTCCTTCACATATTAA
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protein sequence of Ggra6013.t1

>Ggra6013.t1 ID=Ggra6013.t1|Name=Ggra6013.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=311bp
MNDDKDDEYKEQREWHTNANGRVFQRHKPVACYSLSEQQRAALSGELLGA
ISQTADSEREVVQQVTIPPCDARALEVPRGCIMRLELTHGSQVADVNVWN
AHNARERFYSAKTRQIHASHLSVGDSLWSCMPYVRPLATLVADSIAYGID
ADNAGVHDVIGSRCDPYTHALMTGGGEPCAAHHRTCHSNLTRAVLPWALT
EADVHDVFNVFMCTGFSRASGQYFVKRSPARKGDLIELFAHVHLLLAVSA
CAQGDVSTPCGSRERARCFPLRATVQRLPARALAAWTSPPPQCAPPRYHG
AHALRASFTY*
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mRNA from alignment at tig00000197_pilon:147163..148095-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Ggra6013.t1 ID=Ggra6013.t1|Name=Ggra6013.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=933bp|location=Sequence derived from alignment at tig00000197_pilon:147163..148095- (Gracilaria gracilis GNS1m male)
ATGAACGACGACAAGGACGACGAGTACAAGGAGCAGCGCGAGTGGCACAC
CAACGCCAACGGGCGCGTATTCCAGCGCCACAAGCCGGTGGCGTGCTACT
CGTTGAGCGAGCAGCAACGCGCGGCGCTATCCGGCGAGCTGTTGGGCGCC
ATCAGCCAAACGGCAGACAGCGAGCGCGAGGTGGTGCAACAAGTGACAAT
CCCGCCATGCGACGCTCGCGCGTTGGAGGTTCCGCGCGGGTGCATCATGC
GGCTGGAGCTGACGCACGGGTCGCAAGTGGCCGATGTGAACGTGTGGAAC
GCGCACAACGCGCGCGAGCGCTTCTACTCGGCCAAGACGCGGCAGATACA
CGCGTCGCACCTGAGCGTGGGCGACAGCCTGTGGTCGTGCATGCCGTACG
TGCGGCCGCTGGCCACGCTGGTGGCGGACTCCATCGCGTACGGCATCGAC
GCCGATAACGCCGGCGTGCACGACGTGATCGGCTCGCGCTGCGACCCGTA
CACGCACGCGCTCATGACGGGCGGCGGCGAGCCGTGCGCTGCGCACCACC
GCACGTGCCACAGCAACCTCACGCGCGCCGTACTGCCGTGGGCGCTGACG
GAGGCGGACGTGCACGACGTGTTCAACGTGTTCATGTGCACGGGCTTCAG
CCGCGCCAGCGGGCAGTACTTTGTGAAGCGCAGCCCGGCGCGAAAGGGCG
ACCTCATCGAACTGTTCGCGCACGTGCACCTGCTGCTGGCCGTGAGCGCG
TGCGCGCAGGGCGACGTGTCCACGCCGTGCGGCTCGCGTGAGCGCGCGCG
TTGCTTCCCGCTGCGCGCCACCGTGCAGCGGCTGCCCGCCCGCGCGCTGG
CCGCGTGGACGTCGCCGCCGCCGCAGTGCGCGCCGCCGCGCTACCACGGC
GCGCACGCGCTGCGCGCCTCCTTCACATATTAA
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Coding sequence (CDS) from alignment at tig00000197_pilon:147163..148095-

>Ggra6013.t1 ID=Ggra6013.t1|Name=Ggra6013.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=933bp|location=Sequence derived from alignment at tig00000197_pilon:147163..148095- (Gracilaria gracilis GNS1m male)
ATGAACGACGACAAGGACGACGAGTACAAGGAGCAGCGCGAGTGGCACAC
CAACGCCAACGGGCGCGTATTCCAGCGCCACAAGCCGGTGGCGTGCTACT
CGTTGAGCGAGCAGCAACGCGCGGCGCTATCCGGCGAGCTGTTGGGCGCC
ATCAGCCAAACGGCAGACAGCGAGCGCGAGGTGGTGCAACAAGTGACAAT
CCCGCCATGCGACGCTCGCGCGTTGGAGGTTCCGCGCGGGTGCATCATGC
GGCTGGAGCTGACGCACGGGTCGCAAGTGGCCGATGTGAACGTGTGGAAC
GCGCACAACGCGCGCGAGCGCTTCTACTCGGCCAAGACGCGGCAGATACA
CGCGTCGCACCTGAGCGTGGGCGACAGCCTGTGGTCGTGCATGCCGTACG
TGCGGCCGCTGGCCACGCTGGTGGCGGACTCCATCGCGTACGGCATCGAC
GCCGATAACGCCGGCGTGCACGACGTGATCGGCTCGCGCTGCGACCCGTA
CACGCACGCGCTCATGACGGGCGGCGGCGAGCCGTGCGCTGCGCACCACC
GCACGTGCCACAGCAACCTCACGCGCGCCGTACTGCCGTGGGCGCTGACG
GAGGCGGACGTGCACGACGTGTTCAACGTGTTCATGTGCACGGGCTTCAG
CCGCGCCAGCGGGCAGTACTTTGTGAAGCGCAGCCCGGCGCGAAAGGGCG
ACCTCATCGAACTGTTCGCGCACGTGCACCTGCTGCTGGCCGTGAGCGCG
TGCGCGCAGGGCGACGTGTCCACGCCGTGCGGCTCGCGTGAGCGCGCGCG
TTGCTTCCCGCTGCGCGCCACCGTGCAGCGGCTGCCCGCCCGCGCGCTGG
CCGCGTGGACGTCGCCGCCGCCGCAGTGCGCGCCGCCGCGCTACCACGGC
GCGCACGCGCTGCGCGCCTCCTTCACATATTAA
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