Ggra4978.t1 (polypeptide) Gracilaria gracilis GNS1m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGgra4978.t1
Unique NameGgra4978.t1
Typepolypeptide
OrganismGracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length244
Homology
[Close]
BLAST of Ggra4978.t1 vs. uniprot
Match: A0A2V3ICK4 (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ICK4_9FLOR)

HSP 1 Score: 68.9 bits (167), Expect = 2.540e-10
Identity = 69/249 (27.71%), Postives = 108/249 (43.37%), Query Frame = 0 
Query:    2 KNTIFFALHLIAALQLAFKVNSVPIRPYEA-------PEISQQISTPVQRTPNGQNLAGVPGETGDMLDRILLRRKKARAVHRPTESHNEENEFRKYIGSEQRRIFVKDLLNSKLLSKQVRSGSL--QRQFEVLKPYLPPHNFIAPSESLPRATPESEELEMEPSPEXXXXXXXXXXXXMSDYLMPSPSIGPDNDMVFPSFTPLAVDRPRKSFPTLAAVDNERGEITYRPWNSVYVVVRRLFNLDAPAK 241
            K  + F LHL+  L    +V  VP+ P  A       P  +         +   +++     + GD+LDR++  +    A        +E  E  KY+    + I+ +   ++   S   R+  +  +RQ E+LKP++P  + + PS+    A     E  +EPSP       XXXXXX                   P          R ++P+LA V+NE G +TY+PWNSVYV VRR+  L +  K
Sbjct:    6 KGFLVFLLHLVLLLNKV-RVTGVPVLPKRAFKAHENTPSANLVRKDATSSSTQEESMDDASLDNGDILDRVVRMKDPELARDYRMGLEDEAAELAKYLRKGNQEIYHQ---HTPYTSSGRRNAQMIVKRQIEILKPHMPSFDILTPSKESSMAEYGPVEQALEPSPSIGEEMIXXXXXXXXXXXXXXXXXXXXXXXXIPKRY-----ESRPTYPSLAKVENEDGSLTYKPWNSVYVFVRRVLGLGSQRK 245
The following BLAST results are available for this feature:
BLAST of Ggra4978.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ICK42.540e-1027.71Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 137..181
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..15
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..243
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..23

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000014_piloncontigtig00000014_pilon:226117..226848 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria gracilis GNS1m male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Ggra4978.t1Ggra4978.t1Gracilaria gracilis GNS1m malemRNAtig00000014_pilon 226117..226848 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Ggra4978.t1 ID=Ggra4978.t1|Name=Ggra4978.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=244bp
MKNTIFFALHLIAALQLAFKVNSVPIRPYEAPEISQQISTPVQRTPNGQN
LAGVPGETGDMLDRILLRRKKARAVHRPTESHNEENEFRKYIGSEQRRIF
VKDLLNSKLLSKQVRSGSLQRQFEVLKPYLPPHNFIAPSESLPRATPESE
ELEMEPSPELEPSTEVEPSPEMSDYLMPSPSIGPDNDMVFPSFTPLAVDR
PRKSFPTLAAVDNERGEITYRPWNSVYVVVRRLFNLDAPAKKV*
back to top