Ggra10810.t1 (mRNA) Gracilaria gracilis GNS1m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Ggra10810.t1
Unique Name	Ggra10810.t1
Type	mRNA
Organism	Gracilaria gracilis GNS1m male (Gracilaria gracilis GNS1m male (Slender Wart Weed))
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000192_pilon	contig	tig00000192_pilon:18026..19174 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria gracilis GNS1m male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	118161.KB235922_gene2665
PFAMs	Oxidored_FMN
Max annot lvl	1117\|Cyanobacteria
KEGG rclass	RC00250
KEGG ko	ko:K10680
KEGG Reaction	R08014,R08017,R08042
KEGG Pathway	ko00633,ko01120,map00633,map01120
Evalue	1.5e-137
EggNOG OGs	COG1902@1\|root,COG1902@2\|Bacteria,1FZYT@1117\|Cyanobacteria,3VIN3@52604\|Pleurocapsales
Description	NADH:flavin oxidoreductase / NADH oxidase family
COG category	C
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Ggra10810	Ggra10810	Gracilaria gracilis GNS1m male	gene	tig00000192_pilon 18026..19174 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10810.t1.start1	Ggra10810.t1.start1	Gracilaria gracilis GNS1m male	start_codon	tig00000192_pilon 18026..18028 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10810.t1.CDS1	Ggra10810.t1.CDS1	Gracilaria gracilis GNS1m male	CDS	tig00000192_pilon 18026..19174 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10810.t1.exon1	Ggra10810.t1.exon1	Gracilaria gracilis GNS1m male	exon	tig00000192_pilon 18026..19174 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10810.t1.stop1	Ggra10810.t1.stop1	Gracilaria gracilis GNS1m male	stop_codon	tig00000192_pilon 19172..19174 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Ggra10810.t1	Ggra10810.t1	Gracilaria gracilis GNS1m male	polypeptide	tig00000192_pilon 18026..19174 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000192_pilon:18026..19174+
coding sequence from alignment at tig00000192_pilon:18026..19174+

mRNA sequence

>Ggra10810.t1 ID=Ggra10810.t1|Name=Ggra10810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=383bp
MTSYPKLLSPVELNDSLKLPNRVVMAPMTRGRATEKLMANELMAEHYAQR
AAAGLIITEGTHTSVVARGWFQAPEIFTAEHAKAWKVVTDRVHERNGRIF
CQLWHTGRASHSSFRDGISGYEGDMKLAAAPSAIKRSSHSGKQGFTNLPG
QVDIETPRALTLEEVEALPEEYRNAAQCAKDAGFDGVEVHGANGYLLDEF
LQSCSNNRTDKYGGSLENRFRVVDEILRAVLTVFEPHQVGIRISPNGVFN
GMGSDDFRESFLYYAERLAEFKLAYLHVMIGLGFGFHQKGEPMTMAEFRK
VYPGMLIANVGYDANSAEEEIAAGNTDMVAFGRPFISNPDFVERISEGLE
LNESAPQSVYYSSVENVLTSNGYTDFPVSVKA*

spliced messenger RNA

>Ggra10810.t1 ID=Ggra10810.t1|Name=Ggra10810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000192_pilon:18026..19174+ (Gracilaria gracilis GNS1m male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCTCTTACCCGAAACTTCTTTCGCCCGTTGAGCTTAATGACTCGCT
CAAACTCCCGAATCGTGTTGTCATGGCCCCGATGACGCGTGGACGTGCAA
CGGAGAAGCTCATGGCCAACGAGCTCATGGCGGAACACTACGCCCAACGT
GCCGCTGCTGGGCTGATCATCACTGAAGGAACTCACACTTCTGTAGTCGC
ACGTGGTTGGTTCCAGGCTCCGGAGATATTCACCGCCGAGCATGCCAAGG
CATGGAAGGTCGTCACCGATCGTGTTCATGAACGGAACGGTAGAATCTTC
TGCCAGCTATGGCATACTGGAAGGGCCAGTCATTCTTCTTTTCGCGACGG
CATTAGTGGATACGAGGGTGACATGAAACTGGCTGCAGCCCCGTCGGCTA
TAAAGCGAAGCAGCCATTCCGGCAAACAGGGATTCACCAATTTGCCAGGC
CAGGTTGATATCGAGACGCCCCGTGCTCTAACTTTGGAGGAAGTTGAAGC
TTTGCCGGAGGAATATCGCAATGCTGCACAGTGCGCGAAAGATGCCGGGT
TTGATGGAGTAGAAGTTCATGGTGCGAATGGTTACCTTTTGGATGAGTTC
TTACAGAGTTGCTCTAATAATCGAACAGACAAGTATGGTGGAAGCCTTGA
GAACCGTTTCAGAGTTGTTGATGAAATATTGCGAGCTGTACTGACTGTCT
TCGAACCGCATCAAGTGGGCATTCGCATATCTCCGAACGGTGTCTTTAAC
GGAATGGGATCTGATGATTTCAGAGAATCATTTTTATACTATGCAGAACG
CCTGGCGGAATTCAAATTAGCGTACCTTCATGTTATGATAGGACTCGGAT
TTGGTTTCCATCAGAAGGGAGAACCAATGACTATGGCTGAGTTCCGCAAG
GTTTATCCTGGAATGCTGATTGCAAATGTTGGGTATGATGCCAATTCTGC
TGAGGAAGAGATCGCTGCTGGAAACACGGATATGGTTGCTTTTGGACGAC
CATTCATCAGCAATCCGGATTTTGTGGAGCGTATCTCCGAGGGGTTGGAA
CTTAATGAGTCAGCTCCCCAGTCTGTGTACTACTCCTCGGTGGAAAATGT
TCTTACCAGCAATGGTTACACTGACTTCCCTGTTAGCGTAAAGGCTTAA

protein sequence of Ggra10810.t1

>Ggra10810.t1 ID=Ggra10810.t1|Name=Ggra10810.t1|organism=Gracilaria gracilis GNS1m male|type=polypeptide|length=383bp
MTSYPKLLSPVELNDSLKLPNRVVMAPMTRGRATEKLMANELMAEHYAQR
AAAGLIITEGTHTSVVARGWFQAPEIFTAEHAKAWKVVTDRVHERNGRIF
CQLWHTGRASHSSFRDGISGYEGDMKLAAAPSAIKRSSHSGKQGFTNLPG
QVDIETPRALTLEEVEALPEEYRNAAQCAKDAGFDGVEVHGANGYLLDEF
LQSCSNNRTDKYGGSLENRFRVVDEILRAVLTVFEPHQVGIRISPNGVFN
GMGSDDFRESFLYYAERLAEFKLAYLHVMIGLGFGFHQKGEPMTMAEFRK
VYPGMLIANVGYDANSAEEEIAAGNTDMVAFGRPFISNPDFVERISEGLE
LNESAPQSVYYSSVENVLTSNGYTDFPVSVKA*

mRNA from alignment at tig00000192_pilon:18026..19174+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Ggra10810.t1 ID=Ggra10810.t1|Name=Ggra10810.t1|organism=Gracilaria gracilis GNS1m male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00000192_pilon:18026..19174+ (Gracilaria gracilis GNS1m male)
ATGACCTCTTACCCGAAACTTCTTTCGCCCGTTGAGCTTAATGACTCGCT
CAAACTCCCGAATCGTGTTGTCATGGCCCCGATGACGCGTGGACGTGCAA
CGGAGAAGCTCATGGCCAACGAGCTCATGGCGGAACACTACGCCCAACGT
GCCGCTGCTGGGCTGATCATCACTGAAGGAACTCACACTTCTGTAGTCGC
ACGTGGTTGGTTCCAGGCTCCGGAGATATTCACCGCCGAGCATGCCAAGG
CATGGAAGGTCGTCACCGATCGTGTTCATGAACGGAACGGTAGAATCTTC
TGCCAGCTATGGCATACTGGAAGGGCCAGTCATTCTTCTTTTCGCGACGG
CATTAGTGGATACGAGGGTGACATGAAACTGGCTGCAGCCCCGTCGGCTA
TAAAGCGAAGCAGCCATTCCGGCAAACAGGGATTCACCAATTTGCCAGGC
CAGGTTGATATCGAGACGCCCCGTGCTCTAACTTTGGAGGAAGTTGAAGC
TTTGCCGGAGGAATATCGCAATGCTGCACAGTGCGCGAAAGATGCCGGGT
TTGATGGAGTAGAAGTTCATGGTGCGAATGGTTACCTTTTGGATGAGTTC
TTACAGAGTTGCTCTAATAATCGAACAGACAAGTATGGTGGAAGCCTTGA
GAACCGTTTCAGAGTTGTTGATGAAATATTGCGAGCTGTACTGACTGTCT
TCGAACCGCATCAAGTGGGCATTCGCATATCTCCGAACGGTGTCTTTAAC
GGAATGGGATCTGATGATTTCAGAGAATCATTTTTATACTATGCAGAACG
CCTGGCGGAATTCAAATTAGCGTACCTTCATGTTATGATAGGACTCGGAT
TTGGTTTCCATCAGAAGGGAGAACCAATGACTATGGCTGAGTTCCGCAAG
GTTTATCCTGGAATGCTGATTGCAAATGTTGGGTATGATGCCAATTCTGC
TGAGGAAGAGATCGCTGCTGGAAACACGGATATGGTTGCTTTTGGACGAC
CATTCATCAGCAATCCGGATTTTGTGGAGCGTATCTCCGAGGGGTTGGAA
CTTAATGAGTCAGCTCCCCAGTCTGTGTACTACTCCTCGGTGGAAAATGT
TCTTACCAGCAATGGTTACACTGACTTCCCTGTTAGCGTAAAGGCTTAA

Coding sequence (CDS) from alignment at tig00000192_pilon:18026..19174+

>Ggra10810.t1 ID=Ggra10810.t1|Name=Ggra10810.t1|organism=Gracilaria gracilis GNS1m male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00000192_pilon:18026..19174+ (Gracilaria gracilis GNS1m male)
ATGACCTCTTACCCGAAACTTCTTTCGCCCGTTGAGCTTAATGACTCGCT
CAAACTCCCGAATCGTGTTGTCATGGCCCCGATGACGCGTGGACGTGCAA
CGGAGAAGCTCATGGCCAACGAGCTCATGGCGGAACACTACGCCCAACGT
GCCGCTGCTGGGCTGATCATCACTGAAGGAACTCACACTTCTGTAGTCGC
ACGTGGTTGGTTCCAGGCTCCGGAGATATTCACCGCCGAGCATGCCAAGG
CATGGAAGGTCGTCACCGATCGTGTTCATGAACGGAACGGTAGAATCTTC
TGCCAGCTATGGCATACTGGAAGGGCCAGTCATTCTTCTTTTCGCGACGG
CATTAGTGGATACGAGGGTGACATGAAACTGGCTGCAGCCCCGTCGGCTA
TAAAGCGAAGCAGCCATTCCGGCAAACAGGGATTCACCAATTTGCCAGGC
CAGGTTGATATCGAGACGCCCCGTGCTCTAACTTTGGAGGAAGTTGAAGC
TTTGCCGGAGGAATATCGCAATGCTGCACAGTGCGCGAAAGATGCCGGGT
TTGATGGAGTAGAAGTTCATGGTGCGAATGGTTACCTTTTGGATGAGTTC
TTACAGAGTTGCTCTAATAATCGAACAGACAAGTATGGTGGAAGCCTTGA
GAACCGTTTCAGAGTTGTTGATGAAATATTGCGAGCTGTACTGACTGTCT
TCGAACCGCATCAAGTGGGCATTCGCATATCTCCGAACGGTGTCTTTAAC
GGAATGGGATCTGATGATTTCAGAGAATCATTTTTATACTATGCAGAACG
CCTGGCGGAATTCAAATTAGCGTACCTTCATGTTATGATAGGACTCGGAT
TTGGTTTCCATCAGAAGGGAGAACCAATGACTATGGCTGAGTTCCGCAAG
GTTTATCCTGGAATGCTGATTGCAAATGTTGGGTATGATGCCAATTCTGC
TGAGGAAGAGATCGCTGCTGGAAACACGGATATGGTTGCTTTTGGACGAC
CATTCATCAGCAATCCGGATTTTGTGGAGCGTATCTCCGAGGGGTTGGAA
CTTAATGAGTCAGCTCCCCAGTCTGTGTACTACTCCTCGGTGGAAAATGT
TCTTACCAGCAATGGTTACACTGACTTCCCTGTTAGCGTAAAGGCTTAA